Wall clock time and date at job start Sun Mar 29 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47443 * 120.00111 * 2 1 3 5 5 C 1.53001 * 109.47243 * 175.00264 * 4 2 1 6 6 N 1.46899 * 109.46981 * 180.02562 * 5 4 2 7 7 C 1.46904 * 110.99702 * 169.99965 * 6 5 4 8 8 C 1.53002 * 109.46826 * 285.02511 * 7 6 5 9 9 H 1.08997 * 109.47120 * 56.27825 * 8 7 6 10 10 O 1.42895 * 109.47274 * 296.27445 * 8 7 6 11 11 C 1.50703 * 109.46623 * 176.27532 * 8 7 6 12 12 H 1.08000 * 120.00349 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99666 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99860 * 180.02562 * 13 11 8 15 15 Si 1.86790 * 120.00007 * 359.97438 * 13 11 8 16 16 H 1.48505 * 109.47374 * 90.00518 * 15 13 11 17 17 H 1.48500 * 109.47265 * 210.00168 * 15 13 11 18 18 H 1.48501 * 109.47552 * 330.00278 * 15 13 11 19 19 C 1.46894 * 110.99851 * 293.94987 * 6 5 4 20 20 C 1.52999 * 117.50225 * 246.83881 * 19 6 5 21 21 C 1.53000 * 117.49908 * 178.17945 * 19 6 5 22 22 H 1.09002 * 109.47400 * 299.99560 * 1 2 3 23 23 H 1.09001 * 109.47716 * 59.99647 * 1 2 3 24 24 H 1.09001 * 109.47298 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47400 * 240.00440 * 2 1 3 26 26 H 1.09001 * 109.46763 * 60.00575 * 3 2 1 27 27 H 1.09001 * 109.46931 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47232 * 299.99882 * 3 2 1 29 29 H 1.08992 * 109.46714 * 54.99854 * 4 2 1 30 30 H 1.08997 * 109.46817 * 294.99856 * 4 2 1 31 31 H 1.09001 * 109.47080 * 59.99884 * 5 4 2 32 32 H 1.09003 * 109.47130 * 300.00217 * 5 4 2 33 33 H 1.09001 * 109.46962 * 45.02625 * 7 6 5 34 34 H 1.08996 * 109.46706 * 165.02988 * 7 6 5 35 35 H 0.96698 * 113.99946 * 295.10181 * 10 8 7 36 36 H 0.96998 * 119.99795 * 179.97438 * 14 13 11 37 37 H 1.08999 * 115.55400 * 32.51956 * 19 6 5 38 38 H 1.09002 * 117.49435 * 0.02562 * 20 19 6 39 39 H 1.08998 * 117.49684 * 145.01945 * 20 19 6 40 40 H 1.09001 * 117.50747 * 214.98381 * 21 19 6 41 41 H 1.09001 * 117.49366 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0545 -1.5240 2.3871 7 6 5.4789 -1.8587 2.2569 8 6 5.6391 -3.0439 1.3026 9 1 5.1781 -2.8038 0.3445 10 8 5.0037 -4.1951 1.8619 11 6 7.1047 -3.3290 1.0974 12 1 7.8475 -2.7250 1.5973 13 6 7.4972 -4.3603 0.2707 14 7 8.7761 -4.6094 0.0921 15 14 6.2125 -5.4044 -0.5944 16 1 5.8903 -4.8014 -1.9127 17 1 6.7430 -6.7769 -0.7944 18 1 4.9829 -5.4652 0.2359 19 6 3.8100 -0.7237 3.5943 20 6 5.0296 -0.1724 4.3355 21 6 4.2249 -1.3269 4.9378 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1583 2.1369 31 1 3.9994 0.1676 1.1420 32 1 3.8532 -1.3939 0.3002 33 1 6.0196 -0.9985 1.8620 34 1 5.8809 -2.1229 3.2349 35 1 5.4118 -4.5114 2.6795 36 1 9.0522 -5.3352 -0.4892 37 1 2.9113 -0.1071 3.5757 38 1 6.0135 -0.4033 3.9271 39 1 4.9333 0.8067 4.8047 40 1 3.5995 -1.1068 5.8030 41 1 4.6789 -2.3178 4.9258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929274133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:38 Heat of formation + Delta-G solvation = -52.780880 kcal Electronic energy + Delta-G solvation = -18302.740061 eV Core-core repulsion = 15603.344484 eV Total energy + Delta-G solvation = -2699.395576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28462 -37.70234 -37.36910 -34.46366 -34.36817 -31.10485 -29.11822 -27.98401 -26.39125 -24.03324 -23.34040 -22.67840 -21.06158 -20.31908 -19.19651 -17.61665 -16.90741 -16.50504 -16.41690 -15.91977 -15.56653 -15.11313 -14.86825 -14.52371 -14.38201 -13.80936 -13.72869 -13.36484 -13.15244 -12.95305 -12.93071 -12.51002 -12.40558 -12.34821 -12.10970 -11.87585 -11.66904 -11.50160 -11.48942 -11.28084 -11.11398 -10.96996 -10.82473 -10.11025 -8.92114 -8.37720 -6.52362 1.37756 1.43582 1.74737 2.42419 2.75240 3.00677 3.16665 3.82877 3.96519 4.01171 4.04229 4.09749 4.14638 4.17898 4.27050 4.40750 4.51764 4.68888 4.75013 4.79296 4.82551 4.86048 4.88635 4.95569 5.01358 5.04791 5.12939 5.18045 5.21538 5.28783 5.37768 5.44747 5.46868 5.53238 5.54982 6.06023 6.16719 6.32730 6.60443 7.21002 7.35404 8.76496 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.007401 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.085178 B = 3782.474972 C = 4669.226029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.097 4.097 5 C 0.055 3.945 6 N -0.507 5.507 7 C 0.054 3.946 8 C 0.212 3.788 9 H 0.044 0.956 10 O -0.572 6.572 11 C -0.568 4.568 12 H 0.035 0.965 13 C 0.031 3.969 14 N -0.938 5.938 15 Si 0.936 3.064 16 H -0.286 1.286 17 H -0.295 1.295 18 H -0.205 1.205 19 C 0.016 3.984 20 C -0.225 4.225 21 C -0.168 4.168 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.364 0.636 36 H 0.267 0.733 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.199 10.679 4.612 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.072 4.072 6 N -0.228 5.228 7 C -0.073 4.073 8 C 0.153 3.847 9 H 0.062 0.938 10 O -0.378 6.378 11 C -0.606 4.606 12 H 0.054 0.946 13 C -0.169 4.169 14 N -0.577 5.577 15 Si 0.760 3.240 16 H -0.212 1.212 17 H -0.222 1.222 18 H -0.127 1.127 19 C -0.093 4.093 20 C -0.264 4.264 21 C -0.206 4.206 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.211 0.789 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.743 10.212 4.051 20.025 hybrid contribution 1.452 0.045 -0.247 1.474 sum -15.290 10.258 3.804 18.801 Atomic orbital electron populations 1.21779 0.93947 1.01821 1.02268 1.21111 0.96687 0.96473 0.97517 1.21868 1.00601 0.95572 1.02250 1.21557 0.92937 1.00633 0.98355 1.22212 0.96758 0.96093 0.92183 1.61834 1.16562 1.42306 1.02140 1.22548 0.87451 0.97298 1.00045 1.19470 0.89470 0.83414 0.92306 0.93839 1.86580 1.60131 1.47536 1.43590 1.21834 0.92812 1.16682 1.29235 0.94625 1.25820 0.97035 0.98054 0.95980 1.70076 1.17344 1.31636 1.38652 0.86032 0.82642 0.76866 0.78476 1.21241 1.22220 1.12722 1.22855 0.98469 0.99160 0.88804 1.23573 0.96908 0.99420 1.06489 1.23093 1.03468 0.97328 0.96686 0.92015 0.91997 0.92947 0.92305 0.91983 0.93580 0.92043 0.92329 0.90931 0.94469 0.92864 0.95909 0.91186 0.78903 0.92382 0.84702 0.90389 0.87190 0.86364 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.10 -2.05 2.92 -10.79 -0.03 -2.08 16 3 C -0.15 -2.72 8.95 71.98 0.64 -2.08 16 4 C -0.10 -2.35 4.68 30.60 0.14 -2.21 16 5 C 0.05 1.68 4.54 86.30 0.39 2.07 16 6 N -0.51 -16.94 4.59 -870.99 -4.00 -20.94 16 7 C 0.05 2.18 3.23 86.30 0.28 2.45 16 8 C 0.21 10.00 2.39 29.85 0.07 10.07 16 9 H 0.04 2.15 6.07 -2.39 -0.01 2.13 16 10 O -0.57 -26.06 10.08 -148.98 -1.50 -27.56 16 11 C -0.57 -32.28 9.30 25.60 0.24 -32.04 16 12 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 13 C 0.03 1.81 5.47 84.66 0.46 2.28 16 14 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 15 Si 0.94 45.89 26.99 68.60 1.85 47.74 16 16 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 17 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 18 H -0.21 -9.71 5.31 99.48 0.53 -9.18 16 19 C 0.02 0.44 5.83 44.92 0.26 0.70 16 20 C -0.22 -5.86 9.56 30.62 0.29 -5.56 16 21 C -0.17 -4.24 9.91 30.62 0.30 -3.93 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.97 6.56 -2.39 -0.02 0.95 16 28 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.54 6.40 -2.39 -0.02 1.53 16 31 H 0.04 1.09 6.54 -2.39 -0.02 1.07 16 32 H 0.05 1.87 6.53 -2.39 -0.02 1.86 16 33 H 0.02 0.95 7.83 -2.39 -0.02 0.93 16 34 H 0.07 2.79 5.59 -2.39 -0.01 2.78 16 35 H 0.36 15.03 9.02 -74.06 -0.67 14.36 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.14 3.02 6.34 -2.39 -0.02 3.01 16 38 H 0.08 2.41 6.03 -2.39 -0.01 2.40 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 40 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.08 2.34 7.46 -2.39 -0.02 2.32 16 Total: -1.00 -65.00 315.06 0.52 -64.47 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.15 Total: 26.74 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 3.72 Total: -32.07 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.70 Total: -79.32 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.50 Total: -27.56 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.85 Total: 47.74 kcal Total: -65.00 0.52 -64.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929274133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.693 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds