Wall clock time and date at job start Sun Mar 29 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 C 1.53001 * 109.47186 * 120.00159 * 2 1 3 5 5 C 1.52990 * 109.47222 * 65.86205 * 4 2 1 6 6 H 1.08996 * 110.36914 * 174.19015 * 5 4 2 7 7 C 1.54381 * 110.41443 * 51.70938 * 5 4 2 8 8 C 1.54264 * 105.06002 * 217.36848 * 7 5 4 9 9 C 1.54371 * 105.06201 * 359.97438 * 8 7 5 10 10 N 1.48566 * 104.59796 * 23.85426 * 9 8 7 11 11 C 1.46895 * 111.00105 * 200.96422 * 10 9 8 12 12 C 1.53001 * 109.46831 * 283.92650 * 11 10 9 13 13 H 1.09001 * 109.47356 * 60.00291 * 12 11 10 14 14 O 1.42901 * 109.47172 * 300.00130 * 12 11 10 15 15 C 1.50704 * 109.47403 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99411 * 359.97438 * 15 12 11 17 17 C 1.37867 * 120.00345 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00526 * 180.02562 * 17 15 12 19 19 Si 1.86806 * 120.00184 * 0.02562 * 17 15 12 20 20 H 1.48504 * 109.46774 * 89.99737 * 19 17 15 21 21 H 1.48497 * 109.47316 * 209.99894 * 19 17 15 22 22 H 1.48499 * 109.46680 * 330.00147 * 19 17 15 23 23 H 1.09004 * 109.47109 * 291.83263 * 1 2 3 24 24 H 1.08998 * 109.47247 * 51.83450 * 1 2 3 25 25 H 1.09005 * 109.46759 * 171.83101 * 1 2 3 26 26 H 1.09005 * 109.47002 * 240.00227 * 2 1 3 27 27 H 1.08995 * 109.47217 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46874 * 300.00173 * 3 2 1 29 29 H 1.08995 * 109.46929 * 59.99627 * 3 2 1 30 30 H 1.09000 * 109.46446 * 305.86260 * 4 2 1 31 31 H 1.08995 * 109.47051 * 185.86601 * 4 2 1 32 32 H 1.09007 * 110.31982 * 336.26371 * 7 5 4 33 33 H 1.08993 * 110.32570 * 98.47075 * 7 5 4 34 34 H 1.09006 * 110.31655 * 118.89640 * 8 7 5 35 35 H 1.08998 * 110.32287 * 240.99871 * 8 7 5 36 36 H 1.09003 * 110.41147 * 265.07332 * 9 8 7 37 37 H 1.09003 * 110.41132 * 142.63212 * 9 8 7 38 38 H 1.09000 * 109.47332 * 163.93000 * 11 10 9 39 39 H 1.09000 * 109.47358 * 43.92407 * 11 10 9 40 40 H 0.96697 * 114.00092 * 300.00050 * 14 12 11 41 41 H 0.96991 * 120.00765 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6539 -2.1999 1.1777 6 1 2.0973 -2.7484 2.0088 7 6 2.0981 -2.8079 -0.1700 8 6 0.9716 -3.7876 -0.5584 9 6 -0.0581 -3.6897 0.5876 10 7 0.1762 -2.3512 1.1881 11 6 -0.3498 -2.2895 2.5582 12 6 -1.8737 -2.1598 2.5140 13 1 -2.2971 -3.0232 2.0007 14 8 -2.2301 -0.9668 1.8127 15 6 -2.4135 -2.0959 3.9196 16 1 -1.7373 -2.1434 4.7603 17 6 -3.7705 -1.9766 4.1322 18 7 -4.2416 -1.9203 5.3587 19 14 -4.9402 -1.8950 2.6779 20 1 -5.3698 -3.2683 2.3106 21 1 -6.1299 -1.0855 3.0444 22 1 -4.2505 -1.2665 1.5227 23 1 -0.3633 0.3822 0.9540 24 1 -0.3634 0.6350 -0.8080 25 1 -0.3633 -1.0173 -0.1460 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.5935 -0.2716 2.1360 31 1 3.1249 -0.6312 1.3033 32 1 2.1968 -2.0265 -0.9236 33 1 3.0406 -3.3423 -0.0520 34 1 0.5174 -3.4871 -1.5027 35 1 1.3616 -4.8027 -0.6328 36 1 0.1179 -4.4732 1.3247 37 1 -1.0724 -3.7575 0.1941 38 1 0.0735 -1.4261 3.0715 39 1 -0.0781 -3.1995 3.0931 40 1 -1.8863 -0.1570 2.2141 41 1 -5.1962 -1.8368 5.5084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929421943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:03 Heat of formation + Delta-G solvation = -51.299537 kcal Electronic energy + Delta-G solvation = -19051.645002 eV Core-core repulsion = 16352.313661 eV Total energy + Delta-G solvation = -2699.331341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44475 -36.02485 -35.12062 -32.18287 -31.71874 -29.88283 -28.01442 -26.53586 -25.25569 -24.27309 -21.36258 -20.90898 -19.86797 -18.69867 -17.24817 -15.92168 -15.25573 -14.81406 -14.54189 -14.30236 -13.99916 -13.79543 -13.34243 -12.94525 -12.62409 -12.49465 -12.30273 -11.98176 -11.70551 -11.38320 -11.21031 -11.01770 -10.89816 -10.83905 -10.64019 -10.46822 -10.37886 -10.27840 -10.18047 -9.80063 -9.72030 -8.96146 -8.57690 -8.16400 -7.64253 -6.09185 -4.20020 3.42549 3.52205 3.80614 4.38730 4.58116 4.77800 4.92010 5.11287 5.22352 5.26842 5.34212 5.38222 5.58278 5.66833 5.75810 5.83078 5.91351 5.93217 5.95603 5.98907 6.03967 6.11598 6.18399 6.24289 6.30989 6.37697 6.41327 6.48572 6.51156 6.67040 6.70550 6.92310 7.22559 7.43874 7.44981 7.56032 7.75240 8.33660 8.87925 9.17132 9.56495 11.01616 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.007641 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.783259 B = 3663.764197 C = 4013.897804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.098 4.098 5 C 0.058 3.942 6 H 0.043 0.957 7 C -0.126 4.126 8 C -0.123 4.123 9 C 0.029 3.971 10 N -0.483 5.483 11 C 0.028 3.972 12 C 0.207 3.793 13 H 0.050 0.950 14 O -0.566 6.566 15 C -0.565 4.565 16 H 0.069 0.931 17 C 0.083 3.917 18 N -0.896 5.896 19 Si 0.871 3.129 20 H -0.290 1.290 21 H -0.298 1.298 22 H -0.213 1.213 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.032 0.968 40 H 0.351 0.649 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.664 0.644 -11.625 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.136 4.136 5 C -0.051 4.051 6 H 0.062 0.938 7 C -0.164 4.164 8 C -0.161 4.161 9 C -0.099 4.099 10 N -0.207 5.207 11 C -0.100 4.100 12 C 0.148 3.852 13 H 0.067 0.933 14 O -0.371 6.371 15 C -0.603 4.603 16 H 0.087 0.913 17 C -0.121 4.121 18 N -0.533 5.533 19 Si 0.697 3.303 20 H -0.217 1.217 21 H -0.225 1.225 22 H -0.135 1.135 23 H 0.069 0.931 24 H 0.041 0.959 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.197 0.803 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.955 0.660 -12.195 17.090 hybrid contribution 0.005 -0.360 0.645 0.738 sum 11.960 0.300 -11.550 16.629 Atomic orbital electron populations 1.22132 0.92741 1.05039 1.00077 1.21155 0.98182 0.94215 0.97331 1.21895 0.99829 0.97399 1.01405 1.21513 0.99037 0.94118 0.98890 1.22636 0.90030 0.96122 0.96300 0.93850 1.22506 0.97562 0.98753 0.97588 1.22272 0.96145 0.98681 0.98979 1.23124 0.99815 0.90937 0.96001 1.65675 1.08855 1.26293 1.19868 1.23015 0.99540 1.00180 0.87237 1.19598 0.88118 0.85460 0.91979 0.93265 1.86686 1.77751 1.16221 1.56476 1.21550 0.93340 1.53492 0.91902 0.91305 1.24980 0.98572 0.92590 0.95932 1.69961 1.13908 1.48836 1.20618 0.87031 0.79331 0.78023 0.85869 1.21683 1.22459 1.13499 0.93081 0.95859 0.87684 0.91755 0.93752 0.93274 0.92953 0.91746 0.92711 0.90220 0.92300 0.91396 0.92124 0.94290 0.90164 0.91423 0.94957 0.80274 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.63 37.16 0.28 -1.88 16 2 C -0.09 -1.16 2.68 -90.62 -0.24 -1.40 16 3 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 4 C -0.10 -1.27 4.80 -26.74 -0.13 -1.40 16 5 C 0.06 0.80 2.59 -66.08 -0.17 0.63 16 6 H 0.04 0.62 7.99 -51.93 -0.42 0.21 16 7 C -0.13 -1.49 6.36 -25.35 -0.16 -1.65 16 8 C -0.12 -1.49 7.00 -25.35 -0.18 -1.67 16 9 C 0.03 0.45 5.97 -2.18 -0.01 0.43 16 10 N -0.48 -7.79 1.36 -222.16 -0.30 -8.09 16 11 C 0.03 0.54 4.39 -3.83 -0.02 0.53 16 12 C 0.21 4.73 2.39 -27.88 -0.07 4.67 16 13 H 0.05 1.19 6.97 -51.93 -0.36 0.82 16 14 O -0.57 -12.58 8.84 -35.23 -0.31 -12.89 16 15 C -0.57 -15.63 9.34 -34.44 -0.32 -15.95 16 16 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 17 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 19 Si 0.87 21.99 26.99 -169.99 -4.59 17.41 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.21 -5.23 5.31 56.52 0.30 -4.93 16 23 H 0.05 0.83 6.53 -51.93 -0.34 0.49 16 24 H 0.02 0.34 8.13 -51.93 -0.42 -0.09 16 25 H 0.10 1.78 5.56 -51.93 -0.29 1.49 16 26 H 0.06 0.79 5.53 -51.93 -0.29 0.50 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.93 7.19 -51.93 -0.37 0.56 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.91 5.21 -51.93 -0.27 0.64 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.60 7.73 -51.93 -0.40 0.20 16 37 H 0.08 1.29 7.89 -51.93 -0.41 0.89 16 38 H 0.07 1.31 7.10 -51.93 -0.37 0.94 16 39 H 0.03 0.64 7.73 -51.93 -0.40 0.24 16 40 H 0.35 7.23 8.00 45.56 0.36 7.59 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -29.57 303.29 -7.22 -36.79 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.59 Total: 5.73 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -0.77 Total: -16.75 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.47 Total: -34.85 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.31 Total: -12.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.59 Total: 17.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.57 -7.22 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929421943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.510 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds