Wall clock time and date at job start Sun Mar 29 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47477 * 2 1 4 4 C 1.52999 * 109.47231 * 120.00379 * 2 1 3 5 5 C 1.52998 * 109.47029 * 63.98464 * 4 2 1 6 6 H 1.09004 * 110.36785 * 303.25309 * 5 4 2 7 7 C 1.54367 * 110.41353 * 65.60793 * 5 4 2 8 8 C 1.54265 * 105.06135 * 142.74828 * 7 5 4 9 9 C 1.54377 * 105.14892 * 359.95166 * 8 7 5 10 10 N 1.48564 * 110.51002 * 180.84066 * 5 4 2 11 11 C 1.46902 * 110.99884 * 82.12785 * 10 5 4 12 12 C 1.53006 * 109.46743 * 176.60438 * 11 10 5 13 13 H 1.08994 * 109.47494 * 59.99938 * 12 11 10 14 14 O 1.42903 * 109.46971 * 299.99516 * 12 11 10 15 15 C 1.50703 * 109.46842 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99985 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99790 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00307 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00041 * 179.97438 * 17 15 12 20 20 H 1.48510 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47337 * 119.99980 * 19 17 15 22 22 H 1.48503 * 109.47228 * 240.00546 * 19 17 15 23 23 H 1.09007 * 109.46658 * 63.47991 * 1 2 3 24 24 H 1.08995 * 109.47206 * 183.48062 * 1 2 3 25 25 H 1.09001 * 109.46820 * 303.48681 * 1 2 3 26 26 H 1.09005 * 109.47260 * 240.00486 * 2 1 3 27 27 H 1.08999 * 109.47237 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47051 * 300.00418 * 3 2 1 29 29 H 1.09001 * 109.46816 * 59.99629 * 3 2 1 30 30 H 1.09003 * 109.47112 * 303.98084 * 4 2 1 31 31 H 1.08999 * 109.47024 * 183.98392 * 4 2 1 32 32 H 1.09002 * 110.32896 * 23.85475 * 7 5 4 33 33 H 1.09004 * 110.41281 * 261.68555 * 7 5 4 34 34 H 1.09006 * 110.32242 * 118.89822 * 8 7 5 35 35 H 1.09002 * 110.32250 * 240.99816 * 8 7 5 36 36 H 1.08993 * 110.41455 * 94.97345 * 9 8 7 37 37 H 1.09001 * 110.40860 * 217.42284 * 9 8 7 38 38 H 1.08993 * 109.47539 * 296.59903 * 11 10 5 39 39 H 1.08999 * 109.47185 * 56.60918 * 11 10 5 40 40 H 0.96696 * 114.00193 * 300.00751 * 14 12 11 41 41 H 0.96999 * 120.00661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6135 -2.1898 1.2000 6 1 0.5304 -2.2673 1.1053 7 6 2.3096 -2.9137 0.0276 8 6 2.6255 -4.3267 0.5599 9 6 2.0955 -4.3396 2.0097 10 7 2.0802 -2.9084 2.4137 11 6 1.1635 -2.6888 3.5404 12 6 1.6296 -3.5099 4.7444 13 1 2.6352 -3.1999 5.0284 14 8 1.6380 -4.8969 4.4005 15 6 0.6890 -3.2852 5.9002 16 1 -0.1564 -2.6226 5.7874 17 6 0.9077 -3.9254 7.1016 18 7 1.9374 -4.7318 7.2391 19 14 -0.2578 -3.6463 8.5344 20 1 -1.3279 -2.7013 8.1252 21 1 -0.8672 -4.9395 8.9359 22 1 0.4946 -3.0764 9.6808 23 1 -0.3633 0.4589 -0.9196 24 1 -0.3633 -1.0257 0.0624 25 1 -0.3633 0.5670 0.8571 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6196 -0.2504 2.1378 31 1 3.1277 -0.6599 1.2856 32 1 3.2302 -2.3968 -0.2435 33 1 1.6424 -2.9735 -0.8323 34 1 2.1119 -5.0799 -0.0377 35 1 3.7010 -4.5040 0.5482 36 1 1.0880 -4.7542 2.0425 37 1 2.7639 -4.9109 2.6538 38 1 1.1571 -1.6309 3.8028 39 1 0.1579 -2.9989 3.2565 40 1 0.7740 -5.2420 4.1369 41 1 2.0915 -5.1820 8.0844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929421944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:05 Heat of formation + Delta-G solvation = -70.274644 kcal Electronic energy + Delta-G solvation = -18393.330970 eV Core-core repulsion = 15693.176807 eV Total energy + Delta-G solvation = -2700.154163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08183 -36.28416 -35.08450 -32.12181 -31.48961 -29.64106 -27.73702 -27.16937 -25.08476 -24.22197 -21.14226 -20.80466 -19.89884 -19.00954 -16.95733 -15.76593 -15.11386 -14.67768 -14.57519 -14.38550 -14.15049 -13.76328 -13.14224 -13.06116 -12.80950 -12.37362 -12.22033 -12.13910 -11.66680 -11.54193 -11.29436 -10.96756 -10.87222 -10.85669 -10.70115 -10.57087 -10.45738 -10.37131 -10.21777 -10.04878 -9.87516 -8.95043 -8.55465 -8.01537 -7.71733 -5.98574 -4.16518 3.27562 3.35797 3.39053 4.36432 4.52860 4.89657 4.96997 5.08363 5.13443 5.21671 5.28374 5.36688 5.59484 5.60813 5.70298 5.76149 5.83715 5.84548 5.97905 6.02600 6.05511 6.11361 6.18097 6.21127 6.24386 6.26490 6.40117 6.42204 6.53016 6.58062 6.62463 6.82612 7.00806 7.57103 7.66418 7.79425 7.97956 8.23802 8.86972 9.39617 9.60279 11.05619 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027207 B = 0.005990 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.898227 B = 4673.047965 C = 5390.930309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.098 4.098 5 C 0.057 3.943 6 H 0.045 0.955 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.047 3.953 10 N -0.504 5.504 11 C 0.024 3.976 12 C 0.234 3.766 13 H 0.062 0.938 14 O -0.560 6.560 15 C -0.571 4.571 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.020 0.980 40 H 0.339 0.661 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 6.191 -14.666 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.136 4.136 5 C -0.051 4.051 6 H 0.063 0.937 7 C -0.155 4.155 8 C -0.170 4.170 9 C -0.080 4.080 10 N -0.228 5.228 11 C -0.104 4.104 12 C 0.176 3.824 13 H 0.080 0.920 14 O -0.363 6.363 15 C -0.610 4.610 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.183 0.817 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.218 6.328 -14.201 15.549 hybrid contribution -2.173 -0.086 0.568 2.247 sum -1.954 6.242 -13.633 15.121 Atomic orbital electron populations 1.21899 0.95641 1.01859 1.01236 1.21118 0.95660 0.95938 0.98774 1.21829 1.00904 0.96183 1.01398 1.21526 1.01205 0.93806 0.97022 1.22722 0.96992 0.94246 0.91186 0.93666 1.22316 1.00146 0.96077 0.96927 1.22433 1.01247 0.96212 0.97126 1.23197 1.00251 0.90571 0.94022 1.65384 1.47197 1.06613 1.03579 1.23149 0.92589 1.01542 0.93159 1.19361 0.97453 0.77946 0.87598 0.92001 1.86612 1.32812 1.27727 1.89121 1.21665 1.12584 1.29322 0.97388 0.92761 1.25020 0.94895 0.94374 0.98319 1.70090 1.27224 1.27334 1.24749 0.86637 0.81169 0.78020 0.82660 1.19782 1.20934 1.20854 0.93253 0.92507 0.92752 0.91369 0.92766 0.93134 0.92729 0.91968 0.91398 0.91535 0.92396 0.92358 0.91649 0.94800 0.87924 0.91486 0.96211 0.81718 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.02 37.16 0.34 -1.29 16 2 C -0.10 -1.07 2.82 -90.62 -0.26 -1.32 16 3 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 4 C -0.10 -1.35 4.33 -26.73 -0.12 -1.46 16 5 C 0.06 0.87 2.11 -66.08 -0.14 0.73 16 6 H 0.05 0.71 6.15 -51.93 -0.32 0.39 16 7 C -0.12 -1.55 5.57 -25.35 -0.14 -1.69 16 8 C -0.13 -1.89 6.99 -25.35 -0.18 -2.07 16 9 C 0.05 0.84 4.77 -2.09 -0.01 0.83 16 10 N -0.50 -9.44 5.12 -222.01 -1.14 -10.57 16 11 C 0.02 0.50 4.59 -3.82 -0.02 0.49 16 12 C 0.23 5.98 3.03 -27.88 -0.08 5.89 16 13 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 14 O -0.56 -14.09 9.31 -35.23 -0.33 -14.41 16 15 C -0.57 -15.79 8.76 -34.44 -0.30 -16.10 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.53 12.84 55.43 0.71 -24.82 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.73 7.33 -51.93 -0.38 0.35 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 31 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.07 0.85 7.81 -51.93 -0.41 0.44 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.61 7.35 -51.93 -0.38 0.22 16 37 H 0.10 2.08 6.64 -51.93 -0.34 1.74 16 38 H 0.07 1.42 7.46 -51.93 -0.39 1.03 16 39 H 0.02 0.42 7.98 -51.93 -0.41 0.00 16 40 H 0.34 7.75 8.51 45.56 0.39 8.14 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -29.35 315.13 -8.41 -37.76 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.73 Total: 5.98 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.66 Total: -14.95 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.43 Total: -35.39 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.33 Total: -14.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.35 -8.41 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929421944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.513 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds