Wall clock time and date at job start Sun Mar 29 2020 22:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47477 * 2 1 4 4 C 1.52999 * 109.47231 * 120.00379 * 2 1 3 5 5 C 1.52998 * 109.47029 * 63.98464 * 4 2 1 6 6 H 1.09004 * 110.36785 * 303.25309 * 5 4 2 7 7 C 1.54367 * 110.41353 * 65.60793 * 5 4 2 8 8 C 1.54265 * 105.06135 * 142.74828 * 7 5 4 9 9 C 1.54377 * 105.14892 * 359.95166 * 8 7 5 10 10 N 1.48564 * 110.51002 * 180.84066 * 5 4 2 11 11 C 1.46902 * 110.99884 * 82.12785 * 10 5 4 12 12 C 1.53006 * 109.46743 * 176.60438 * 11 10 5 13 13 H 1.08994 * 109.47494 * 59.99938 * 12 11 10 14 14 O 1.42903 * 109.46971 * 299.99516 * 12 11 10 15 15 C 1.50703 * 109.46842 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99985 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99790 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00307 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00041 * 179.97438 * 17 15 12 20 20 H 1.48510 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47337 * 119.99980 * 19 17 15 22 22 H 1.48503 * 109.47228 * 240.00546 * 19 17 15 23 23 H 1.09007 * 109.46658 * 63.47991 * 1 2 3 24 24 H 1.08995 * 109.47206 * 183.48062 * 1 2 3 25 25 H 1.09001 * 109.46820 * 303.48681 * 1 2 3 26 26 H 1.09005 * 109.47260 * 240.00486 * 2 1 3 27 27 H 1.08999 * 109.47237 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47051 * 300.00418 * 3 2 1 29 29 H 1.09001 * 109.46816 * 59.99629 * 3 2 1 30 30 H 1.09003 * 109.47112 * 303.98084 * 4 2 1 31 31 H 1.08999 * 109.47024 * 183.98392 * 4 2 1 32 32 H 1.09002 * 110.32896 * 23.85475 * 7 5 4 33 33 H 1.09004 * 110.41281 * 261.68555 * 7 5 4 34 34 H 1.09006 * 110.32242 * 118.89822 * 8 7 5 35 35 H 1.09002 * 110.32250 * 240.99816 * 8 7 5 36 36 H 1.08993 * 110.41455 * 94.97345 * 9 8 7 37 37 H 1.09001 * 110.40860 * 217.42284 * 9 8 7 38 38 H 1.08993 * 109.47539 * 296.59903 * 11 10 5 39 39 H 1.08999 * 109.47185 * 56.60918 * 11 10 5 40 40 H 0.96696 * 114.00193 * 300.00751 * 14 12 11 41 41 H 0.96999 * 120.00661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6135 -2.1898 1.2000 6 1 0.5304 -2.2673 1.1053 7 6 2.3096 -2.9137 0.0276 8 6 2.6255 -4.3267 0.5599 9 6 2.0955 -4.3396 2.0097 10 7 2.0802 -2.9084 2.4137 11 6 1.1635 -2.6888 3.5404 12 6 1.6296 -3.5099 4.7444 13 1 2.6352 -3.1999 5.0284 14 8 1.6380 -4.8969 4.4005 15 6 0.6890 -3.2852 5.9002 16 1 -0.1564 -2.6226 5.7874 17 6 0.9077 -3.9254 7.1016 18 7 1.9374 -4.7318 7.2391 19 14 -0.2578 -3.6463 8.5344 20 1 -1.3279 -2.7013 8.1252 21 1 -0.8672 -4.9395 8.9359 22 1 0.4946 -3.0764 9.6808 23 1 -0.3633 0.4589 -0.9196 24 1 -0.3633 -1.0257 0.0624 25 1 -0.3633 0.5670 0.8571 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6196 -0.2504 2.1378 31 1 3.1277 -0.6599 1.2856 32 1 3.2302 -2.3968 -0.2435 33 1 1.6424 -2.9735 -0.8323 34 1 2.1119 -5.0799 -0.0377 35 1 3.7010 -4.5040 0.5482 36 1 1.0880 -4.7542 2.0425 37 1 2.7639 -4.9109 2.6538 38 1 1.1571 -1.6309 3.8028 39 1 0.1579 -2.9989 3.2565 40 1 0.7740 -5.2420 4.1369 41 1 2.0915 -5.1820 8.0844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929421944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:04 Heat of formation + Delta-G solvation = -90.030004 kcal Electronic energy + Delta-G solvation = -18394.187627 eV Core-core repulsion = 15693.176807 eV Total energy + Delta-G solvation = -2701.010820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44015 -37.83788 -36.47129 -34.27611 -33.02751 -30.80105 -29.61379 -27.99757 -26.49212 -25.89652 -22.84233 -21.93631 -21.44874 -20.09632 -19.01381 -17.00169 -16.71321 -16.55972 -16.14653 -15.87315 -15.63307 -15.08661 -14.69457 -14.19450 -13.91767 -13.82395 -13.66150 -13.32410 -13.06254 -13.03539 -12.85247 -12.66291 -12.49443 -12.26425 -12.00715 -11.88346 -11.74796 -11.67274 -11.46577 -11.21524 -11.17709 -11.01176 -10.72818 -9.97832 -9.23344 -8.14623 -6.40823 1.38373 1.39446 1.51724 2.37345 3.11008 3.17365 3.75499 3.87978 4.06362 4.13691 4.15084 4.22589 4.26337 4.42136 4.47869 4.55731 4.65677 4.71838 4.82753 4.83484 4.90699 4.97032 5.03271 5.04748 5.10225 5.17618 5.19847 5.24245 5.35431 5.39583 5.40318 5.52071 5.57973 5.61815 5.74085 6.00105 6.21143 6.30059 6.72077 7.31217 7.51331 8.90057 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027207 B = 0.005990 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.898227 B = 4673.047965 C = 5390.930309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.094 4.094 5 C 0.057 3.943 6 H 0.045 0.955 7 C -0.109 4.109 8 C -0.125 4.125 9 C 0.047 3.953 10 N -0.521 5.521 11 C 0.045 3.955 12 C 0.237 3.763 13 H 0.018 0.982 14 O -0.568 6.568 15 C -0.587 4.587 16 H 0.057 0.943 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 0.961 3.039 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.349 0.651 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 6.936 -16.311 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.132 4.132 5 C -0.051 4.051 6 H 0.063 0.937 7 C -0.147 4.147 8 C -0.163 4.163 9 C -0.081 4.081 10 N -0.245 5.245 11 C -0.084 4.084 12 C 0.180 3.820 13 H 0.036 0.964 14 O -0.371 6.371 15 C -0.625 4.625 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.204 1.204 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.831 7.083 -15.864 17.393 hybrid contribution -1.808 -0.330 1.056 2.120 sum -2.639 6.753 -14.807 16.487 Atomic orbital electron populations 1.21892 0.95350 1.01472 1.01840 1.21080 0.95821 0.96398 0.97534 1.21818 1.01065 0.95423 1.01893 1.21504 1.00692 0.93119 0.97853 1.22826 0.97204 0.94869 0.90245 0.93740 1.22314 1.00909 0.94824 0.96627 1.22391 1.01507 0.97733 0.94678 1.23077 0.99480 0.89613 0.95937 1.65326 1.46855 1.07744 1.04552 1.22710 0.92869 1.00130 0.92691 1.19114 0.94857 0.78726 0.89330 0.96395 1.86575 1.33537 1.27731 1.89268 1.22030 1.12824 1.29219 0.98435 0.92524 1.25890 0.96493 0.93951 1.01217 1.70227 1.29170 1.28534 1.25649 0.85495 0.78970 0.78145 0.78853 1.18840 1.20327 1.20415 0.91412 0.93190 0.93603 0.90074 0.92563 0.91466 0.93428 0.93917 0.92066 0.90597 0.89815 0.90158 0.91417 0.95111 0.91217 0.91954 0.96035 0.80668 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.02 71.98 0.65 -2.25 16 2 C -0.09 -1.79 2.82 -10.79 -0.03 -1.82 16 3 C -0.14 -2.58 9.19 71.98 0.66 -1.91 16 4 C -0.09 -2.49 4.33 30.59 0.13 -2.36 16 5 C 0.06 1.65 2.11 45.06 0.10 1.74 16 6 H 0.04 1.33 6.15 -2.38 -0.01 1.31 16 7 C -0.11 -2.59 5.57 31.49 0.18 -2.41 16 8 C -0.12 -3.34 6.99 31.49 0.22 -3.12 16 9 C 0.05 1.66 4.77 86.42 0.41 2.08 16 10 N -0.52 -19.65 5.12 -856.29 -4.39 -24.04 16 11 C 0.04 1.94 4.59 86.30 0.40 2.33 16 12 C 0.24 12.59 3.03 29.85 0.09 12.68 16 13 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 14 O -0.57 -29.55 9.31 -148.98 -1.39 -30.94 16 15 C -0.59 -33.03 8.76 25.60 0.22 -32.81 16 16 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.03 1.53 5.40 84.66 0.46 1.99 16 18 N -0.90 -54.65 12.84 21.45 0.28 -54.37 16 19 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.05 1.04 6.32 -2.39 -0.02 1.02 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.45 7.33 -2.38 -0.02 1.43 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.04 1.29 7.46 -2.39 -0.02 1.27 16 31 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.08 1.69 7.81 -2.39 -0.02 1.68 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.03 1.10 7.35 -2.39 -0.02 1.08 16 37 H 0.07 2.93 6.64 -2.39 -0.02 2.92 16 38 H 0.06 2.71 7.46 -2.39 -0.02 2.70 16 39 H 0.02 0.91 7.98 -2.39 -0.02 0.89 16 40 H 0.35 16.37 8.51 -74.06 -0.63 15.74 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -63.92 315.13 0.36 -63.56 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.35 Total: 25.66 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 3.48 Total: -25.85 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -4.11 Total: -78.41 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.39 Total: -30.94 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.92 0.36 -63.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929421944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.472 kcal (2) G-P(sol) polarization free energy of solvation -63.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds