Wall clock time and date at job start Sun Mar 29 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53007 * 109.52121 * 59.87410 * 3 2 1 5 5 C 1.53119 * 109.52502 * 299.68562 * 3 2 1 6 6 C 1.53036 * 109.28159 * 182.43316 * 5 3 2 7 7 N 1.46853 * 109.52053 * 59.18248 * 6 5 3 8 8 C 1.46894 * 111.00218 * 174.16332 * 7 6 5 9 9 C 1.53004 * 109.46622 * 294.20722 * 8 7 6 10 10 H 1.08995 * 109.47410 * 60.00233 * 9 8 7 11 11 O 1.42896 * 109.47176 * 299.99947 * 9 8 7 12 12 C 1.50707 * 109.46919 * 180.02562 * 9 8 7 13 13 H 1.07996 * 120.00083 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99614 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00372 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 119.99695 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47146 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47227 * 119.99767 * 16 14 12 19 19 H 1.48493 * 109.47160 * 239.99998 * 16 14 12 20 20 C 1.46849 * 111.19567 * 298.25569 * 7 6 5 21 21 C 1.53040 * 109.52358 * 61.74454 * 20 7 6 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.08998 * 109.47126 * 60.00267 * 4 3 2 28 28 H 1.08995 * 109.47024 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46911 * 300.00363 * 4 3 2 30 30 H 1.08996 * 109.50200 * 302.38218 * 5 3 2 31 31 H 1.09003 * 109.50006 * 62.49371 * 5 3 2 32 32 H 1.09000 * 109.46479 * 299.17075 * 6 5 3 33 33 H 1.08993 * 109.46515 * 179.19366 * 6 5 3 34 34 H 1.09001 * 109.47603 * 54.20371 * 8 7 6 35 35 H 1.09001 * 109.47334 * 174.21349 * 8 7 6 36 36 H 0.96700 * 114.00166 * 299.99887 * 11 9 8 37 37 H 0.96998 * 119.99947 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.46624 * 301.72649 * 20 7 6 39 39 H 1.08998 * 109.46134 * 181.75683 * 20 7 6 40 40 H 1.08996 * 109.50635 * 180.88096 * 21 20 7 41 41 H 1.08997 * 109.50696 * 60.75986 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5281 2.1658 1.2473 5 6 1.5368 2.1632 -1.2537 6 6 2.0996 3.5861 -1.2788 7 7 3.5672 3.5334 -1.2787 8 6 4.1422 4.8752 -1.4418 9 6 3.7921 5.4146 -2.8301 10 1 2.7087 5.4683 -2.9365 11 8 4.3261 4.5428 -3.8285 12 6 4.3826 6.7910 -2.9979 13 1 4.9503 7.2366 -2.1945 14 6 4.1969 7.4818 -4.1766 15 7 3.5051 6.9394 -5.1547 16 14 4.9282 9.1881 -4.3842 17 1 5.6566 9.5684 -3.1472 18 1 5.8704 9.1866 -5.5321 19 1 3.8397 10.1656 -4.6386 20 6 4.0751 2.8877 -0.0615 21 6 3.5712 1.4439 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8896 1.6531 2.1387 28 1 1.8915 3.1934 1.2463 29 1 0.4381 2.1662 1.2453 30 1 1.8691 1.6246 -2.1411 31 1 0.4476 2.2029 -1.2381 32 1 1.7556 4.1283 -0.3981 33 1 1.7548 4.0973 -2.1776 34 1 3.7349 5.5402 -0.6803 35 1 5.2257 4.8216 -1.3356 36 1 5.2878 4.4474 -3.7937 37 1 3.3749 7.4252 -5.9841 38 1 3.7219 3.4332 0.8136 39 1 5.1650 2.8916 -0.0761 40 1 3.9355 0.9698 0.9113 41 1 3.9356 0.8940 -0.8677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929462938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:17 Heat of formation + Delta-G solvation = -68.616785 kcal Electronic energy + Delta-G solvation = -18517.917263 eV Core-core repulsion = 15817.834990 eV Total energy + Delta-G solvation = -2700.082273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60871 -36.38950 -34.46631 -32.03628 -31.03473 -30.35213 -28.35999 -27.06529 -25.05201 -23.47443 -22.90693 -20.90313 -19.95974 -17.96305 -16.96468 -15.55365 -14.82828 -14.75926 -14.61514 -14.49792 -13.92353 -13.83724 -13.53114 -13.32014 -12.97102 -12.48165 -12.10121 -11.95868 -11.64702 -11.51197 -11.36321 -11.09200 -10.96523 -10.91961 -10.74257 -10.66246 -10.56884 -10.19754 -10.07820 -9.82238 -9.80423 -8.89274 -8.52646 -8.02334 -7.48917 -5.97023 -4.15135 3.28371 3.36553 3.39821 4.36685 4.56678 4.78193 4.87841 4.90663 5.29959 5.31892 5.40686 5.46198 5.56054 5.64462 5.66482 5.71441 5.80949 5.90038 5.96887 5.97871 6.04979 6.10231 6.15852 6.21234 6.23559 6.30837 6.36494 6.40786 6.53100 6.59222 6.65688 6.73500 6.88549 7.66613 7.75555 7.84468 7.95587 8.25531 8.89389 9.51016 9.67866 11.07144 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047280 B = 0.005165 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.079596 B = 5420.038548 C = 5573.729913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.062 4.062 4 C -0.145 4.145 5 C -0.103 4.103 6 C 0.055 3.945 7 N -0.525 5.525 8 C 0.031 3.969 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.554 6.554 12 C -0.574 4.574 13 H 0.054 0.946 14 C 0.080 3.920 15 N -0.859 5.859 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.053 3.947 21 C -0.103 4.103 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.342 0.658 37 H 0.259 0.741 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -11.210 11.101 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.062 4.062 4 C -0.202 4.202 5 C -0.141 4.141 6 C -0.073 4.073 7 N -0.249 5.249 8 C -0.096 4.096 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.612 4.612 13 H 0.072 0.928 14 C -0.126 4.126 15 N -0.495 5.495 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.075 4.075 21 C -0.140 4.140 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.100 0.900 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.185 0.815 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.911 -11.522 10.361 15.981 hybrid contribution 0.749 1.657 0.790 1.983 sum -3.162 -9.865 11.151 15.221 Atomic orbital electron populations 1.21882 0.96204 1.01046 1.02129 1.21546 0.95729 0.96053 1.01531 1.20599 0.95311 0.94720 0.95562 1.22007 1.00791 1.00591 0.96848 1.21666 0.99161 0.95949 0.97316 1.22108 0.88178 0.96164 1.00814 1.61925 1.06328 1.21378 1.35286 1.23055 0.98578 0.86722 1.01285 1.19319 0.95053 0.86818 0.80909 0.92865 1.86554 1.22962 1.68754 1.57245 1.21720 1.36452 1.02142 1.00907 0.92755 1.25018 0.94324 0.97419 0.95840 1.70093 1.38033 1.36794 1.04546 0.86643 0.79091 0.84639 0.78151 1.19769 1.20860 1.20926 1.22088 0.99343 0.94580 0.91485 1.21611 0.94409 0.96658 1.01365 0.92666 0.93335 0.92265 0.92515 0.92010 0.93235 0.92437 0.92652 0.91132 0.91982 0.95795 0.89950 0.95871 0.92031 0.81522 0.93090 0.95700 0.91575 0.92426 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.21 37.16 0.34 -1.17 16 2 C -0.11 -1.18 5.00 -26.73 -0.13 -1.31 16 3 C -0.06 -0.76 0.55 -154.38 -0.08 -0.85 16 4 C -0.15 -1.69 7.55 37.16 0.28 -1.41 16 5 C -0.10 -1.50 4.46 -26.65 -0.12 -1.62 16 6 C 0.06 0.97 5.04 -3.83 -0.02 0.95 16 7 N -0.52 -9.76 4.52 -234.67 -1.06 -10.82 16 8 C 0.03 0.66 4.56 -3.83 -0.02 0.64 16 9 C 0.24 6.10 2.70 -27.88 -0.08 6.02 16 10 H 0.05 1.50 6.43 -51.93 -0.33 1.17 16 11 O -0.55 -14.71 12.59 -35.23 -0.44 -15.15 16 12 C -0.57 -15.96 8.76 -34.44 -0.30 -16.26 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 15 N -0.86 -25.69 12.84 55.43 0.71 -24.98 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.05 0.82 5.21 -3.83 -0.02 0.80 16 21 C -0.10 -1.34 4.88 -26.65 -0.13 -1.47 16 22 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.60 6.50 -51.93 -0.34 0.27 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.75 4.93 -51.93 -0.26 0.49 16 29 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 32 H 0.02 0.41 6.52 -51.93 -0.34 0.07 16 33 H 0.08 1.67 6.21 -51.93 -0.32 1.35 16 34 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 36 H 0.34 8.21 9.04 45.56 0.41 8.62 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.02 0.38 6.51 -51.93 -0.34 0.04 16 39 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -29.96 306.89 -7.84 -37.81 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.28 Total: 5.72 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.37 Total: -13.50 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.35 Total: -35.80 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.44 Total: -15.15 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.96 -7.84 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929462938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.811 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds