Wall clock time and date at job start Sun Mar 29 2020 22:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53007 * 109.52121 * 59.87410 * 3 2 1 5 5 C 1.53119 * 109.52502 * 299.68562 * 3 2 1 6 6 C 1.53036 * 109.28159 * 182.43316 * 5 3 2 7 7 N 1.46853 * 109.52053 * 59.18248 * 6 5 3 8 8 C 1.46894 * 111.00218 * 174.16332 * 7 6 5 9 9 C 1.53004 * 109.46622 * 294.20722 * 8 7 6 10 10 H 1.08995 * 109.47410 * 60.00233 * 9 8 7 11 11 O 1.42896 * 109.47176 * 299.99947 * 9 8 7 12 12 C 1.50707 * 109.46919 * 180.02562 * 9 8 7 13 13 H 1.07996 * 120.00083 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99614 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00372 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 119.99695 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47146 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47227 * 119.99767 * 16 14 12 19 19 H 1.48493 * 109.47160 * 239.99998 * 16 14 12 20 20 C 1.46849 * 111.19567 * 298.25569 * 7 6 5 21 21 C 1.53040 * 109.52358 * 61.74454 * 20 7 6 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.08998 * 109.47126 * 60.00267 * 4 3 2 28 28 H 1.08995 * 109.47024 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46911 * 300.00363 * 4 3 2 30 30 H 1.08996 * 109.50200 * 302.38218 * 5 3 2 31 31 H 1.09003 * 109.50006 * 62.49371 * 5 3 2 32 32 H 1.09000 * 109.46479 * 299.17075 * 6 5 3 33 33 H 1.08993 * 109.46515 * 179.19366 * 6 5 3 34 34 H 1.09001 * 109.47603 * 54.20371 * 8 7 6 35 35 H 1.09001 * 109.47334 * 174.21349 * 8 7 6 36 36 H 0.96700 * 114.00166 * 299.99887 * 11 9 8 37 37 H 0.96998 * 119.99947 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.46624 * 301.72649 * 20 7 6 39 39 H 1.08998 * 109.46134 * 181.75683 * 20 7 6 40 40 H 1.08996 * 109.50635 * 180.88096 * 21 20 7 41 41 H 1.08997 * 109.50696 * 60.75986 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5281 2.1658 1.2473 5 6 1.5368 2.1632 -1.2537 6 6 2.0996 3.5861 -1.2788 7 7 3.5672 3.5334 -1.2787 8 6 4.1422 4.8752 -1.4418 9 6 3.7921 5.4146 -2.8301 10 1 2.7087 5.4683 -2.9365 11 8 4.3261 4.5428 -3.8285 12 6 4.3826 6.7910 -2.9979 13 1 4.9503 7.2366 -2.1945 14 6 4.1969 7.4818 -4.1766 15 7 3.5051 6.9394 -5.1547 16 14 4.9282 9.1881 -4.3842 17 1 5.6566 9.5684 -3.1472 18 1 5.8704 9.1866 -5.5321 19 1 3.8397 10.1656 -4.6386 20 6 4.0751 2.8877 -0.0615 21 6 3.5712 1.4439 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8896 1.6531 2.1387 28 1 1.8915 3.1934 1.2463 29 1 0.4381 2.1662 1.2453 30 1 1.8691 1.6246 -2.1411 31 1 0.4476 2.2029 -1.2381 32 1 1.7556 4.1283 -0.3981 33 1 1.7548 4.0973 -2.1776 34 1 3.7349 5.5402 -0.6803 35 1 5.2257 4.8216 -1.3356 36 1 5.2878 4.4474 -3.7937 37 1 3.3749 7.4252 -5.9841 38 1 3.7219 3.4332 0.8136 39 1 5.1650 2.8916 -0.0761 40 1 3.9355 0.9698 0.9113 41 1 3.9356 0.8940 -0.8677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929462938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:16 Heat of formation + Delta-G solvation = -89.487740 kcal Electronic energy + Delta-G solvation = -18518.822295 eV Core-core repulsion = 15817.834990 eV Total energy + Delta-G solvation = -2700.987305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82050 -38.08721 -36.05720 -34.21833 -32.23426 -31.60656 -29.92947 -28.36502 -26.59501 -24.85130 -24.28626 -22.26070 -21.57081 -19.20972 -18.90707 -16.81679 -16.66821 -16.43270 -16.22068 -15.73804 -15.38976 -15.15039 -14.94692 -14.81965 -14.15838 -14.09464 -13.24832 -13.19121 -12.97942 -12.89007 -12.81441 -12.74770 -12.47967 -12.39605 -12.21089 -12.04993 -11.95018 -11.68356 -11.25013 -11.16272 -10.94927 -10.82240 -10.65080 -10.06546 -9.00275 -8.13510 -6.39936 1.39213 1.40156 1.52615 2.38101 3.09046 3.13623 3.76237 3.84645 3.89936 4.24549 4.30962 4.31563 4.37039 4.48932 4.51963 4.54199 4.61631 4.74260 4.75989 4.78027 4.85149 4.88828 4.99190 5.03022 5.15616 5.16444 5.17801 5.24938 5.32650 5.35759 5.39297 5.54830 5.60390 5.67954 5.76347 6.04172 6.26977 6.40782 6.74412 7.34626 7.62844 8.91325 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047280 B = 0.005165 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.079596 B = 5420.038548 C = 5573.729913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.096 4.096 6 C 0.058 3.942 7 N -0.537 5.537 8 C 0.048 3.952 9 C 0.238 3.762 10 H 0.018 0.982 11 O -0.570 6.570 12 C -0.590 4.590 13 H 0.058 0.942 14 C 0.026 3.974 15 N -0.900 5.900 16 Si 0.961 3.039 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.052 3.948 21 C -0.098 4.098 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.352 0.648 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -11.848 12.873 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.058 4.058 4 C -0.199 4.199 5 C -0.134 4.134 6 C -0.070 4.070 7 N -0.261 5.261 8 C -0.080 4.080 9 C 0.180 3.820 10 H 0.036 0.964 11 O -0.373 6.373 12 C -0.628 4.628 13 H 0.076 0.924 14 C -0.176 4.176 15 N -0.538 5.538 16 Si 0.786 3.214 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.076 4.076 21 C -0.136 4.136 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.464 -12.171 12.154 17.546 hybrid contribution 0.591 1.819 0.236 1.928 sum -2.873 -10.351 12.391 16.399 Atomic orbital electron populations 1.21876 0.95527 1.01857 1.01949 1.21503 0.96287 0.94480 1.02126 1.20581 0.94873 0.95833 0.94529 1.21970 1.01338 0.99566 0.96999 1.21617 0.99787 0.93817 0.98178 1.22052 0.87883 0.98041 0.99057 1.61870 1.06806 1.19733 1.37726 1.22662 0.98959 0.88178 0.98175 1.19164 0.92962 0.86663 0.83177 0.96403 1.86499 1.23862 1.68848 1.58061 1.22103 1.36331 1.03205 1.01139 0.92367 1.25906 0.94599 1.01671 0.95447 1.70235 1.39560 1.38773 1.05186 0.85490 0.78291 0.79278 0.78377 1.18713 1.20342 1.20446 1.22196 0.99607 0.95783 0.89980 1.21609 0.94856 0.94848 1.02278 0.92041 0.92097 0.93239 0.90847 0.92487 0.91411 0.94145 0.91861 0.92776 0.90759 0.95300 0.93849 0.96219 0.91370 0.80433 0.92981 0.95049 0.91178 0.89707 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.21 71.98 0.66 -1.96 16 2 C -0.11 -1.97 5.00 30.59 0.15 -1.81 16 3 C -0.06 -1.31 0.55 -52.10 -0.03 -1.34 16 4 C -0.14 -2.93 7.55 71.98 0.54 -2.39 16 5 C -0.10 -2.77 4.46 30.65 0.14 -2.63 16 6 C 0.06 2.08 5.04 86.32 0.44 2.52 16 7 N -0.54 -20.10 4.52 -896.36 -4.05 -24.16 16 8 C 0.05 2.08 4.56 86.31 0.39 2.47 16 9 C 0.24 12.67 2.70 29.85 0.08 12.75 16 10 H 0.02 1.09 6.43 -2.39 -0.02 1.07 16 11 O -0.57 -31.21 12.59 -148.98 -1.88 -33.08 16 12 C -0.59 -33.24 8.76 25.60 0.22 -33.02 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 14 C 0.03 1.49 5.40 84.66 0.46 1.94 16 15 N -0.90 -55.08 12.84 21.45 0.28 -54.80 16 16 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 C 0.05 1.52 5.21 86.33 0.45 1.97 16 21 C -0.10 -2.35 4.88 30.65 0.15 -2.20 16 22 H 0.06 0.97 6.43 -2.39 -0.02 0.95 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.93 6.50 -2.38 -0.02 0.91 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 0.97 4.93 -2.39 -0.01 0.96 16 29 H 0.06 1.21 6.43 -2.39 -0.02 1.19 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.93 6.58 -2.39 -0.02 1.92 16 32 H 0.03 1.00 6.52 -2.39 -0.02 0.99 16 33 H 0.04 1.88 6.21 -2.39 -0.01 1.87 16 34 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.07 2.81 7.99 -2.39 -0.02 2.79 16 36 H 0.35 17.24 9.04 -74.06 -0.67 16.57 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.03 0.89 6.51 -2.39 -0.02 0.88 16 39 H 0.07 1.99 8.01 -2.39 -0.02 1.97 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -64.97 306.89 0.36 -64.61 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.33 Total: 25.13 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.66 Total: -23.69 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -3.78 Total: -78.96 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.88 Total: -33.08 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.97 0.36 -64.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929462938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.877 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds