Wall clock time and date at job start Sun Mar 29 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47347 * 2 1 4 4 C 1.52995 * 109.47246 * 174.20672 * 3 2 1 5 5 C 1.52999 * 109.46982 * 181.75126 * 4 3 2 6 6 N 1.46901 * 109.47202 * 294.21301 * 3 2 1 7 7 C 1.46902 * 110.99363 * 281.04895 * 6 3 2 8 8 C 1.53000 * 109.46799 * 163.18457 * 7 6 3 9 9 H 1.08996 * 109.47291 * 61.32668 * 8 7 6 10 10 O 1.42905 * 109.47251 * 301.32945 * 8 7 6 11 11 C 1.50693 * 109.47348 * 181.33241 * 8 7 6 12 12 H 1.08001 * 119.99794 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00389 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00138 * 179.97438 * 13 11 8 15 15 Si 1.86800 * 119.99923 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.47146 * 89.99698 * 15 13 11 17 17 H 1.48501 * 109.46945 * 209.99855 * 15 13 11 18 18 H 1.48500 * 109.46889 * 329.99511 * 15 13 11 19 19 C 1.46893 * 110.99893 * 157.09524 * 6 3 2 20 20 C 1.52998 * 117.50200 * 265.71014 * 19 6 3 21 21 C 1.53003 * 117.49677 * 197.08492 * 19 6 3 22 22 H 1.08991 * 109.47318 * 305.07616 * 1 2 3 23 23 H 1.09005 * 109.46717 * 65.07903 * 1 2 3 24 24 H 1.09005 * 109.46754 * 185.07260 * 1 2 3 25 25 H 1.09001 * 109.47596 * 239.99721 * 2 1 3 26 26 H 1.09001 * 109.46808 * 120.00257 * 2 1 3 27 27 H 1.09001 * 109.46948 * 54.20904 * 3 2 1 28 28 H 1.09000 * 109.47213 * 301.75093 * 4 3 2 29 29 H 1.08998 * 109.47398 * 61.75237 * 4 3 2 30 30 H 1.09004 * 109.47177 * 166.94259 * 5 4 3 31 31 H 1.08996 * 109.47231 * 286.93671 * 5 4 3 32 32 H 1.09003 * 109.47274 * 46.93981 * 5 4 3 33 33 H 1.08996 * 109.47314 * 43.18439 * 7 6 3 34 34 H 1.08994 * 109.47499 * 283.17955 * 7 6 3 35 35 H 0.96704 * 113.99901 * 300.00379 * 10 8 7 36 36 H 0.97005 * 120.00084 * 180.02562 * 14 13 11 37 37 H 1.08998 * 115.55172 * 51.42581 * 19 6 3 38 38 H 1.09003 * 117.49779 * 0.02562 * 20 19 6 39 39 H 1.08991 * 117.50304 * 145.02348 * 20 19 6 40 40 H 1.08994 * 117.50229 * 214.97727 * 21 19 6 41 41 H 1.08995 * 117.49748 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5631 1.4449 0.1456 5 6 4.0688 2.8882 0.1895 6 7 1.6678 2.0935 -1.2631 7 6 2.5753 1.6958 -2.3477 8 6 1.9379 2.0356 -3.6964 9 1 1.7758 3.1116 -3.7609 10 8 0.6858 1.3574 -3.8159 11 6 2.8544 1.5980 -4.8097 12 1 3.7974 1.1252 -4.5784 13 6 2.4890 1.8012 -6.1236 14 7 3.2891 1.4197 -7.0951 15 14 0.8582 2.6196 -6.5237 16 1 1.0500 4.0897 -6.6093 17 1 0.3543 2.1095 -7.8241 18 1 -0.1260 2.3102 -5.4556 19 6 1.6353 3.5544 -1.1128 20 6 0.2877 4.2013 -0.7869 21 6 0.8939 4.3583 -2.1829 22 1 -0.3633 0.5905 0.8409 23 1 -0.3633 0.4331 -0.9320 24 1 -0.3633 -1.0237 0.0909 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.5945 1.9854 0.8336 28 1 3.8407 0.9344 1.0678 29 1 4.0101 0.9289 -0.7041 30 1 5.1069 2.8995 0.5219 31 1 4.0014 3.3272 -0.8059 32 1 3.4587 3.4661 0.8836 33 1 2.7591 0.6229 -2.2927 34 1 3.5191 2.2317 -2.2466 35 1 0.7541 0.3940 -3.7672 36 1 3.0323 1.5630 -8.0195 37 1 2.5277 4.0019 -0.6754 38 1 -0.5748 3.5428 -0.6835 39 1 0.2932 5.0745 -0.1347 40 1 1.2983 5.3349 -2.4489 41 1 0.4307 3.8032 -2.9986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929476492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:40 Heat of formation + Delta-G solvation = -17.580209 kcal Electronic energy + Delta-G solvation = -19172.674150 eV Core-core repulsion = 16474.804989 eV Total energy + Delta-G solvation = -2697.869161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33211 -35.74456 -35.47619 -32.16991 -32.07042 -31.17872 -28.36386 -26.06749 -24.65557 -22.08322 -21.83399 -20.82029 -20.49174 -19.18904 -17.02908 -16.30716 -15.30618 -14.88804 -14.60071 -14.07820 -13.97386 -13.76570 -13.41034 -13.06657 -12.66596 -12.63199 -12.34902 -11.82764 -11.51876 -11.44552 -11.24472 -11.10087 -10.92027 -10.87103 -10.60529 -10.46741 -10.41363 -10.21208 -10.01083 -9.64613 -9.52239 -8.80869 -8.55981 -8.14425 -7.55859 -6.07587 -4.17271 3.42391 3.52180 3.79710 4.20888 4.25933 4.58691 4.89626 5.19209 5.23449 5.28464 5.37062 5.40521 5.49513 5.60144 5.61724 5.69408 5.76668 5.92703 5.97174 6.00892 6.02662 6.07966 6.12199 6.22662 6.23978 6.30483 6.35290 6.40377 6.52162 6.57223 6.68905 6.72197 6.81429 7.46259 7.52038 7.76200 7.82043 8.35975 8.90248 9.19682 9.58609 11.03395 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.008446 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.059172 B = 3314.484150 C = 3425.133225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.087 3.913 4 C -0.157 4.157 5 C -0.159 4.159 6 N -0.491 5.491 7 C 0.042 3.958 8 C 0.193 3.807 9 H 0.065 0.935 10 O -0.570 6.570 11 C -0.563 4.563 12 H 0.068 0.932 13 C 0.083 3.917 14 N -0.897 5.897 15 Si 0.869 3.131 16 H -0.289 1.289 17 H -0.298 1.298 18 H -0.214 1.214 19 C -0.005 4.005 20 C -0.172 4.172 21 C -0.173 4.173 22 H 0.042 0.958 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.351 0.649 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 1.731 15.130 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.022 4.022 4 C -0.196 4.196 5 C -0.216 4.216 6 N -0.214 5.214 7 C -0.085 4.085 8 C 0.136 3.864 9 H 0.082 0.918 10 O -0.375 6.375 11 C -0.601 4.601 12 H 0.086 0.914 13 C -0.121 4.121 14 N -0.534 5.534 15 Si 0.695 3.305 16 H -0.216 1.216 17 H -0.225 1.225 18 H -0.136 1.136 19 C -0.113 4.113 20 C -0.209 4.209 21 C -0.210 4.210 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.196 0.804 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.094 2.171 14.786 15.496 hybrid contribution 0.640 0.113 -0.170 0.672 sum -3.454 2.285 14.616 15.191 Atomic orbital electron populations 1.21626 0.95408 1.00038 1.02698 1.21492 0.96684 0.95474 1.01158 1.21753 0.92337 0.95401 0.92663 1.22272 0.97830 0.97280 1.02216 1.22107 1.00303 0.97035 1.02149 1.61964 1.51537 1.03908 1.03986 1.22837 0.93657 0.99751 0.92212 1.19946 0.82438 0.94136 0.89919 0.91764 1.86643 1.33533 1.21620 1.95691 1.21577 1.05894 1.42082 0.90531 0.91393 1.24973 0.97134 0.93897 0.96090 1.69968 1.37272 1.46482 0.99701 0.87067 0.86351 0.78620 0.78435 1.21562 1.22477 1.13607 1.22789 0.95095 0.88810 1.04636 1.22933 0.97233 1.01777 0.99004 1.23241 1.03824 1.00483 0.93495 0.93883 0.90853 0.94067 0.91728 0.92795 0.91022 0.92303 0.91013 0.93244 0.91535 0.92823 0.91568 0.94611 0.80363 0.92739 0.88792 0.88669 0.89904 0.89560 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.75 37.16 0.36 -1.46 16 2 C -0.11 -1.45 5.47 -26.73 -0.15 -1.60 16 3 C 0.09 1.21 1.91 -67.72 -0.13 1.08 16 4 C -0.16 -2.07 4.90 -26.73 -0.13 -2.20 16 5 C -0.16 -2.02 8.04 37.16 0.30 -1.72 16 6 N -0.49 -7.96 3.87 -218.73 -0.85 -8.81 16 7 C 0.04 0.81 3.01 -3.82 -0.01 0.80 16 8 C 0.19 4.42 1.69 -27.89 -0.05 4.37 16 9 H 0.06 1.52 4.35 -51.93 -0.23 1.30 16 10 O -0.57 -12.82 9.78 -35.23 -0.34 -13.16 16 11 C -0.56 -15.56 9.34 -34.44 -0.32 -15.88 16 12 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 13 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 14 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 15 Si 0.87 21.95 26.99 -169.99 -4.59 17.36 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 17 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 18 H -0.21 -5.25 5.31 56.52 0.30 -4.95 16 19 C 0.00 -0.07 4.03 -67.72 -0.27 -0.35 16 20 C -0.17 -2.44 10.46 -26.73 -0.28 -2.72 16 21 C -0.17 -2.87 8.60 -26.73 -0.23 -3.10 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.94 6.85 -51.93 -0.36 0.58 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.06 6.29 -51.93 -0.33 0.73 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.96 4.69 -51.93 -0.24 0.72 16 32 H 0.05 0.63 7.46 -51.93 -0.39 0.24 16 33 H 0.07 1.28 6.18 -51.93 -0.32 0.96 16 34 H 0.04 0.71 5.70 -51.93 -0.30 0.41 16 35 H 0.35 7.26 9.04 45.56 0.41 7.67 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 1.38 4.27 -51.93 -0.22 1.16 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.12 2.27 6.04 -51.93 -0.31 1.96 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -29.66 304.90 -7.56 -37.22 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.14 Total: 10.06 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.01 Total: -20.48 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.07 Total: -35.60 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.34 Total: -13.16 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.59 Total: 17.36 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.66 -7.56 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929476492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds