Wall clock time and date at job start Sun Mar 29 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47347 * 2 1 4 4 C 1.52995 * 109.47246 * 174.20672 * 3 2 1 5 5 C 1.52999 * 109.46982 * 181.75126 * 4 3 2 6 6 N 1.46901 * 109.47202 * 294.21301 * 3 2 1 7 7 C 1.46902 * 110.99363 * 281.04895 * 6 3 2 8 8 C 1.53000 * 109.46799 * 163.18457 * 7 6 3 9 9 H 1.08996 * 109.47291 * 61.32668 * 8 7 6 10 10 O 1.42905 * 109.47251 * 301.32945 * 8 7 6 11 11 C 1.50693 * 109.47348 * 181.33241 * 8 7 6 12 12 H 1.08001 * 119.99794 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00389 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00138 * 179.97438 * 13 11 8 15 15 Si 1.86800 * 119.99923 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.47146 * 89.99698 * 15 13 11 17 17 H 1.48501 * 109.46945 * 209.99855 * 15 13 11 18 18 H 1.48500 * 109.46889 * 329.99511 * 15 13 11 19 19 C 1.46893 * 110.99893 * 157.09524 * 6 3 2 20 20 C 1.52998 * 117.50200 * 265.71014 * 19 6 3 21 21 C 1.53003 * 117.49677 * 197.08492 * 19 6 3 22 22 H 1.08991 * 109.47318 * 305.07616 * 1 2 3 23 23 H 1.09005 * 109.46717 * 65.07903 * 1 2 3 24 24 H 1.09005 * 109.46754 * 185.07260 * 1 2 3 25 25 H 1.09001 * 109.47596 * 239.99721 * 2 1 3 26 26 H 1.09001 * 109.46808 * 120.00257 * 2 1 3 27 27 H 1.09001 * 109.46948 * 54.20904 * 3 2 1 28 28 H 1.09000 * 109.47213 * 301.75093 * 4 3 2 29 29 H 1.08998 * 109.47398 * 61.75237 * 4 3 2 30 30 H 1.09004 * 109.47177 * 166.94259 * 5 4 3 31 31 H 1.08996 * 109.47231 * 286.93671 * 5 4 3 32 32 H 1.09003 * 109.47274 * 46.93981 * 5 4 3 33 33 H 1.08996 * 109.47314 * 43.18439 * 7 6 3 34 34 H 1.08994 * 109.47499 * 283.17955 * 7 6 3 35 35 H 0.96704 * 113.99901 * 300.00379 * 10 8 7 36 36 H 0.97005 * 120.00084 * 180.02562 * 14 13 11 37 37 H 1.08998 * 115.55172 * 51.42581 * 19 6 3 38 38 H 1.09003 * 117.49779 * 0.02562 * 20 19 6 39 39 H 1.08991 * 117.50304 * 145.02348 * 20 19 6 40 40 H 1.08994 * 117.50229 * 214.97727 * 21 19 6 41 41 H 1.08995 * 117.49748 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5631 1.4449 0.1456 5 6 4.0688 2.8882 0.1895 6 7 1.6678 2.0935 -1.2631 7 6 2.5753 1.6958 -2.3477 8 6 1.9379 2.0356 -3.6964 9 1 1.7758 3.1116 -3.7609 10 8 0.6858 1.3574 -3.8159 11 6 2.8544 1.5980 -4.8097 12 1 3.7974 1.1252 -4.5784 13 6 2.4890 1.8012 -6.1236 14 7 3.2891 1.4197 -7.0951 15 14 0.8582 2.6196 -6.5237 16 1 1.0500 4.0897 -6.6093 17 1 0.3543 2.1095 -7.8241 18 1 -0.1260 2.3102 -5.4556 19 6 1.6353 3.5544 -1.1128 20 6 0.2877 4.2013 -0.7869 21 6 0.8939 4.3583 -2.1829 22 1 -0.3633 0.5905 0.8409 23 1 -0.3633 0.4331 -0.9320 24 1 -0.3633 -1.0237 0.0909 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.5945 1.9854 0.8336 28 1 3.8407 0.9344 1.0678 29 1 4.0101 0.9289 -0.7041 30 1 5.1069 2.8995 0.5219 31 1 4.0014 3.3272 -0.8059 32 1 3.4587 3.4661 0.8836 33 1 2.7591 0.6229 -2.2927 34 1 3.5191 2.2317 -2.2466 35 1 0.7541 0.3940 -3.7672 36 1 3.0323 1.5630 -8.0195 37 1 2.5277 4.0019 -0.6754 38 1 -0.5748 3.5428 -0.6835 39 1 0.2932 5.0745 -0.1347 40 1 1.2983 5.3349 -2.4489 41 1 0.4307 3.8032 -2.9986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929476492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:40 Heat of formation + Delta-G solvation = -37.852492 kcal Electronic energy + Delta-G solvation = -19173.553222 eV Core-core repulsion = 16474.804989 eV Total energy + Delta-G solvation = -2698.748233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61472 -37.47511 -36.71072 -34.36816 -33.18073 -32.48706 -30.10443 -27.33162 -26.34209 -23.33808 -22.90928 -22.54187 -21.67524 -20.51214 -19.04850 -17.65624 -16.83587 -16.62382 -16.02055 -15.74389 -15.28415 -15.04950 -14.88198 -14.56598 -14.31528 -13.76667 -13.56149 -13.48499 -13.03484 -12.86302 -12.70773 -12.48678 -12.38151 -12.21865 -12.05635 -11.77597 -11.63268 -11.59193 -11.39865 -11.19030 -10.83177 -10.75216 -10.62092 -10.01919 -8.87335 -8.33484 -6.46005 1.38900 1.44515 1.75894 2.45127 2.93341 3.05147 3.06716 3.82724 4.11329 4.11911 4.17890 4.20051 4.27415 4.37105 4.40944 4.49013 4.59064 4.66380 4.76981 4.80236 4.86497 4.88873 4.92759 5.04762 5.08965 5.13704 5.22664 5.25997 5.28178 5.38174 5.43117 5.50425 5.53591 5.63891 5.68762 6.12435 6.32125 6.49425 6.67222 7.26695 7.43121 8.81129 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.008446 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.059172 B = 3314.484150 C = 3425.133225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 C 0.088 3.912 4 C -0.154 4.154 5 C -0.156 4.156 6 N -0.493 5.493 7 C 0.061 3.939 8 C 0.202 3.798 9 H 0.063 0.937 10 O -0.570 6.570 11 C -0.563 4.563 12 H 0.031 0.969 13 C 0.028 3.972 14 N -0.943 5.943 15 Si 0.935 3.065 16 H -0.286 1.286 17 H -0.301 1.301 18 H -0.202 1.202 19 C -0.015 4.015 20 C -0.143 4.143 21 C -0.195 4.195 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.359 0.641 36 H 0.265 0.735 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 2.518 17.658 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C -0.020 4.020 4 C -0.193 4.193 5 C -0.213 4.213 6 N -0.217 5.217 7 C -0.066 4.066 8 C 0.144 3.856 9 H 0.080 0.920 10 O -0.376 6.376 11 C -0.601 4.601 12 H 0.049 0.951 13 C -0.171 4.171 14 N -0.583 5.583 15 Si 0.760 3.240 16 H -0.212 1.212 17 H -0.228 1.228 18 H -0.124 1.124 19 C -0.123 4.123 20 C -0.181 4.181 21 C -0.232 4.232 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.206 0.794 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.422 2.952 17.339 18.406 hybrid contribution 1.106 -0.177 -0.902 1.439 sum -4.316 2.775 16.437 17.219 Atomic orbital electron populations 1.21554 0.95145 1.00718 1.01754 1.21503 0.96843 0.95071 1.01278 1.21847 0.92935 0.95651 0.91549 1.22231 0.97141 0.97655 1.02303 1.22063 1.01343 0.96653 1.01232 1.61880 1.50546 1.04832 1.04421 1.22411 0.93357 0.99160 0.91710 1.19754 0.81698 0.93831 0.90330 0.91958 1.86583 1.32851 1.22380 1.95746 1.21950 1.05264 1.40770 0.92124 0.95075 1.25813 1.00461 0.94679 0.96111 1.70095 1.39376 1.48633 1.00187 0.86046 0.82418 0.77505 0.78062 1.21249 1.22776 1.12410 1.22966 0.96552 0.88219 1.04554 1.22970 0.95827 1.02040 0.97243 1.23163 1.05365 1.00919 0.93776 0.92696 0.93406 0.93037 0.93692 0.90569 0.89509 0.90158 0.93273 0.92233 0.93702 0.91292 0.92279 0.95574 0.79424 0.92651 0.87576 0.89087 0.86928 0.88537 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.75 71.98 0.70 -2.49 16 2 C -0.11 -2.64 5.47 30.59 0.17 -2.47 16 3 C 0.09 2.23 1.91 44.91 0.09 2.31 16 4 C -0.15 -3.75 4.90 30.59 0.15 -3.60 16 5 C -0.16 -3.62 8.04 71.98 0.58 -3.04 16 6 N -0.49 -15.34 3.87 -845.94 -3.28 -18.62 16 7 C 0.06 2.36 3.01 86.30 0.26 2.62 16 8 C 0.20 9.28 1.69 29.85 0.05 9.33 16 9 H 0.06 2.95 4.35 -2.39 -0.01 2.94 16 10 O -0.57 -25.33 9.78 -148.98 -1.46 -26.79 16 11 C -0.56 -31.98 9.34 25.60 0.24 -31.74 16 12 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 13 C 0.03 1.67 5.47 84.65 0.46 2.13 16 14 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 15 Si 0.94 46.11 26.99 68.60 1.85 47.96 16 16 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 17 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 18 H -0.20 -9.51 5.31 99.48 0.53 -8.99 16 19 C -0.01 -0.42 4.03 44.92 0.18 -0.24 16 20 C -0.14 -3.61 10.46 30.60 0.32 -3.29 16 21 C -0.19 -6.14 8.60 30.60 0.26 -5.88 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.38 7.92 -2.38 -0.02 1.36 16 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.04 1.26 6.85 -2.39 -0.02 1.25 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.99 7.89 -2.39 -0.02 1.97 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.42 6.29 -2.39 -0.02 1.40 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.04 1.24 4.69 -2.39 -0.01 1.23 16 32 H 0.07 1.39 7.46 -2.39 -0.02 1.37 16 33 H 0.06 2.34 6.18 -2.39 -0.01 2.32 16 34 H 0.03 1.05 5.70 -2.39 -0.01 1.04 16 35 H 0.36 14.75 9.04 -74.05 -0.67 14.08 16 36 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 37 H 0.11 2.86 4.27 -2.39 -0.01 2.85 16 38 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.08 3.20 6.04 -2.39 -0.01 3.19 16 Total: -1.00 -64.64 304.90 1.04 -63.60 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.16 Total: 29.48 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.46 Total: -36.36 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.98 Total: -77.90 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.46 Total: -26.79 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.85 Total: 47.96 kcal Total: -64.64 1.04 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929476492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.752 kcal (2) G-P(sol) polarization free energy of solvation -64.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds