Wall clock time and date at job start Sun Mar 29 2020 22:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 C 1.53006 * 109.46662 * 240.00287 * 2 1 3 5 5 C 1.52998 * 109.47549 * 120.00332 * 2 1 3 6 6 H 1.08997 * 110.42545 * 182.30830 * 5 2 1 7 7 C 1.54910 * 110.37118 * 304.62668 * 5 2 1 8 8 C 1.55139 * 101.65391 * 155.89920 * 7 5 2 9 9 C 1.54328 * 103.01783 * 324.34433 * 8 7 5 10 10 N 1.47436 * 107.22944 * 22.28431 * 9 8 7 11 11 C 1.46906 * 111.00027 * 123.26142 * 10 9 8 12 12 C 1.53002 * 109.46937 * 69.86783 * 11 10 9 13 13 H 1.09002 * 109.47070 * 60.00391 * 12 11 10 14 14 O 1.42898 * 109.47113 * 300.00260 * 12 11 10 15 15 C 1.50703 * 109.46966 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99742 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99873 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00433 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99975 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46979 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47371 * 119.99948 * 19 17 15 22 22 H 1.48496 * 109.47443 * 240.00340 * 19 17 15 23 23 H 1.09006 * 109.47013 * 299.99847 * 1 2 3 24 24 H 1.08996 * 109.47183 * 59.99626 * 1 2 3 25 25 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46871 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47355 * 300.00269 * 3 2 1 28 28 H 1.08997 * 109.47204 * 60.00240 * 3 2 1 29 29 H 1.08997 * 109.46958 * 299.99592 * 4 2 1 30 30 H 1.08996 * 109.47250 * 60.00129 * 4 2 1 31 31 H 1.09000 * 109.46978 * 180.02562 * 4 2 1 32 32 H 1.09002 * 110.99351 * 37.80458 * 7 5 2 33 33 H 1.09005 * 110.98696 * 273.98639 * 7 5 2 34 34 H 1.08996 * 110.70676 * 205.96136 * 8 7 5 35 35 H 1.09001 * 110.71156 * 82.72587 * 8 7 5 36 36 H 1.08997 * 109.88370 * 262.87938 * 9 8 7 37 37 H 1.09000 * 109.88574 * 141.69029 * 9 8 7 38 38 H 1.09002 * 109.46463 * 309.87357 * 11 10 9 39 39 H 1.08996 * 109.47065 * 189.86984 * 11 10 9 40 40 H 0.96698 * 113.99898 * 299.99778 * 14 12 11 41 41 H 0.97001 * 120.00323 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 1 3.1291 -0.6948 1.2856 7 6 1.4419 -0.0782 2.5252 8 6 1.5317 -1.2499 3.5382 9 6 1.2488 -2.4888 2.6626 10 7 1.5583 -2.1189 1.2694 11 6 2.5573 -3.0285 0.6926 12 6 1.9302 -4.4085 0.4840 13 1 1.0817 -4.3231 -0.1949 14 8 1.4853 -4.9243 1.7402 15 6 2.9553 -5.3418 -0.1071 16 1 3.9541 -4.9863 -0.3130 17 6 2.6179 -6.6494 -0.3851 18 7 1.4017 -7.0824 -0.1339 19 14 3.8882 -7.8061 -1.1184 20 1 5.1703 -7.0800 -1.3036 21 1 4.0987 -8.9554 -0.2020 22 1 3.4057 -8.3025 -2.4322 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1299 -0.7217 -1.2492 32 1 0.4059 0.2196 2.3635 33 1 2.0435 0.7692 2.8541 34 1 0.7746 -1.1462 4.3154 35 1 2.5287 -1.3062 3.9750 36 1 0.1993 -2.7707 2.7471 37 1 1.8840 -3.3173 2.9762 38 1 3.4057 -3.1138 1.3715 39 1 2.8967 -2.6350 -0.2655 40 1 2.1895 -5.0269 2.3949 41 1 1.1643 -8.0022 -0.3299 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929523047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:07 Heat of formation + Delta-G solvation = -58.508003 kcal Electronic energy + Delta-G solvation = -18957.379062 eV Core-core repulsion = 16257.735139 eV Total energy + Delta-G solvation = -2699.643923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53011 -36.11970 -34.75634 -32.09743 -31.55760 -27.76212 -27.66696 -26.99075 -26.80003 -24.40162 -21.45388 -20.98143 -19.91220 -18.10263 -16.85679 -15.94264 -15.10308 -14.58374 -14.30319 -13.98641 -13.93361 -13.56632 -13.28622 -13.00347 -12.76337 -12.14245 -12.02316 -11.82584 -11.63496 -11.34413 -11.30234 -11.07171 -10.95096 -10.85918 -10.68962 -10.59973 -10.46160 -10.18791 -10.04024 -9.92645 -9.81744 -8.89380 -8.54029 -7.97552 -7.54504 -5.97121 -4.15181 3.27955 3.36304 3.39400 4.37110 4.55971 4.91050 4.95122 5.25764 5.29620 5.33202 5.34383 5.41987 5.68869 5.77911 5.81421 5.84672 5.97870 6.05488 6.08275 6.11194 6.12513 6.19060 6.27973 6.33459 6.38229 6.39684 6.49513 6.55573 6.67145 6.74176 6.78459 6.84806 7.01269 7.66172 7.78804 7.80685 8.01495 8.26747 8.89064 9.43076 9.62406 11.06869 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030812 B = 0.006771 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.514522 B = 4134.086098 C = 4602.976750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.144 4.144 5 C 0.080 3.920 6 H 0.044 0.956 7 C -0.128 4.128 8 C -0.148 4.148 9 C 0.056 3.944 10 N -0.515 5.515 11 C 0.021 3.979 12 C 0.237 3.763 13 H 0.061 0.939 14 O -0.559 6.559 15 C -0.572 4.572 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.074 0.926 40 H 0.338 0.662 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 14.185 3.351 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.028 4.028 6 H 0.062 0.938 7 C -0.166 4.166 8 C -0.187 4.187 9 C -0.072 4.072 10 N -0.238 5.238 11 C -0.107 4.107 12 C 0.179 3.821 13 H 0.079 0.921 14 O -0.361 6.361 15 C -0.611 4.611 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.493 5.493 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.182 0.818 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.572 13.978 2.716 14.251 hybrid contribution 2.136 -0.660 0.260 2.251 sum 1.564 13.318 2.976 13.736 Atomic orbital electron populations 1.21814 0.94329 1.03000 0.99872 1.20378 0.96212 0.93681 0.94887 1.21893 1.00534 0.96158 1.01235 1.21987 1.00036 1.02077 0.96029 1.22545 0.96569 0.89844 0.93876 0.93806 1.22838 1.01695 0.97134 0.94890 1.22900 1.00979 0.96470 0.98324 1.22830 1.02238 0.95416 0.86685 1.63401 1.41898 1.00403 1.18121 1.23327 0.92223 0.96614 0.98543 1.19340 0.94494 0.85232 0.82996 0.92108 1.86649 1.37283 1.87641 1.24557 1.21698 0.98224 0.96336 1.44795 0.92829 1.25015 0.94963 0.98202 0.94406 1.70093 1.18046 1.16044 1.45166 0.86661 0.81930 0.81053 0.78986 1.19799 1.20955 1.20881 0.93298 0.94011 0.90866 0.93220 0.92926 0.92939 0.90423 0.93586 0.93569 0.90303 0.92001 0.91575 0.92391 0.90981 0.91679 0.96423 0.90778 0.81841 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 7.97 37.16 0.30 -1.53 16 2 C -0.05 -0.70 0.64 -154.51 -0.10 -0.80 16 3 C -0.14 -1.61 8.30 37.16 0.31 -1.30 16 4 C -0.14 -2.15 7.10 37.16 0.26 -1.89 16 5 C 0.08 1.21 1.82 -66.19 -0.12 1.09 16 6 H 0.04 0.70 7.81 -51.93 -0.41 0.29 16 7 C -0.13 -1.67 5.44 -24.59 -0.13 -1.80 16 8 C -0.15 -2.03 6.94 -24.90 -0.17 -2.21 16 9 C 0.06 0.96 5.51 -2.83 -0.02 0.95 16 10 N -0.51 -9.24 3.80 -223.38 -0.85 -10.09 16 11 C 0.02 0.43 3.79 -3.82 -0.01 0.41 16 12 C 0.24 5.99 3.08 -27.88 -0.09 5.90 16 13 H 0.06 1.74 8.14 -51.93 -0.42 1.32 16 14 O -0.56 -14.09 10.34 -35.23 -0.36 -14.45 16 15 C -0.57 -15.72 8.76 -34.44 -0.30 -16.03 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.50 12.84 55.43 0.71 -24.79 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.05 0.61 6.02 -51.93 -0.31 0.30 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.18 7.65 -51.93 -0.40 0.79 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.55 7.33 -51.93 -0.38 0.17 16 29 H 0.08 1.37 6.16 -51.93 -0.32 1.05 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.67 7.95 -51.93 -0.41 0.26 16 32 H 0.08 1.01 5.66 -51.93 -0.29 0.72 16 33 H 0.06 0.71 8.03 -51.93 -0.42 0.30 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.19 5.20 -51.93 -0.27 0.92 16 38 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 39 H 0.07 1.52 5.28 -51.93 -0.27 1.24 16 40 H 0.34 7.71 7.92 45.56 0.36 8.07 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -29.16 306.77 -7.53 -36.69 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.46 Total: 6.81 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.17 Total: -15.04 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.14 Total: -34.88 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.36 Total: -14.45 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.16 -7.53 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929523047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.820 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds