Wall clock time and date at job start Sun Mar 29 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 C 1.53006 * 109.46662 * 240.00287 * 2 1 3 5 5 C 1.52998 * 109.47549 * 120.00332 * 2 1 3 6 6 H 1.08997 * 110.42545 * 182.30830 * 5 2 1 7 7 C 1.54910 * 110.37118 * 304.62668 * 5 2 1 8 8 C 1.55139 * 101.65391 * 155.89920 * 7 5 2 9 9 C 1.54328 * 103.01783 * 324.34433 * 8 7 5 10 10 N 1.47436 * 107.22944 * 22.28431 * 9 8 7 11 11 C 1.46906 * 111.00027 * 123.26142 * 10 9 8 12 12 C 1.53002 * 109.46937 * 69.86783 * 11 10 9 13 13 H 1.09002 * 109.47070 * 60.00391 * 12 11 10 14 14 O 1.42898 * 109.47113 * 300.00260 * 12 11 10 15 15 C 1.50703 * 109.46966 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99742 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99873 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00433 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99975 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46979 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47371 * 119.99948 * 19 17 15 22 22 H 1.48496 * 109.47443 * 240.00340 * 19 17 15 23 23 H 1.09006 * 109.47013 * 299.99847 * 1 2 3 24 24 H 1.08996 * 109.47183 * 59.99626 * 1 2 3 25 25 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46871 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47355 * 300.00269 * 3 2 1 28 28 H 1.08997 * 109.47204 * 60.00240 * 3 2 1 29 29 H 1.08997 * 109.46958 * 299.99592 * 4 2 1 30 30 H 1.08996 * 109.47250 * 60.00129 * 4 2 1 31 31 H 1.09000 * 109.46978 * 180.02562 * 4 2 1 32 32 H 1.09002 * 110.99351 * 37.80458 * 7 5 2 33 33 H 1.09005 * 110.98696 * 273.98639 * 7 5 2 34 34 H 1.08996 * 110.70676 * 205.96136 * 8 7 5 35 35 H 1.09001 * 110.71156 * 82.72587 * 8 7 5 36 36 H 1.08997 * 109.88370 * 262.87938 * 9 8 7 37 37 H 1.09000 * 109.88574 * 141.69029 * 9 8 7 38 38 H 1.09002 * 109.46463 * 309.87357 * 11 10 9 39 39 H 1.08996 * 109.47065 * 189.86984 * 11 10 9 40 40 H 0.96698 * 113.99898 * 299.99778 * 14 12 11 41 41 H 0.97001 * 120.00323 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 1 3.1291 -0.6948 1.2856 7 6 1.4419 -0.0782 2.5252 8 6 1.5317 -1.2499 3.5382 9 6 1.2488 -2.4888 2.6626 10 7 1.5583 -2.1189 1.2694 11 6 2.5573 -3.0285 0.6926 12 6 1.9302 -4.4085 0.4840 13 1 1.0817 -4.3231 -0.1949 14 8 1.4853 -4.9243 1.7402 15 6 2.9553 -5.3418 -0.1071 16 1 3.9541 -4.9863 -0.3130 17 6 2.6179 -6.6494 -0.3851 18 7 1.4017 -7.0824 -0.1339 19 14 3.8882 -7.8061 -1.1184 20 1 5.1703 -7.0800 -1.3036 21 1 4.0987 -8.9554 -0.2020 22 1 3.4057 -8.3025 -2.4322 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1299 -0.7217 -1.2492 32 1 0.4059 0.2196 2.3635 33 1 2.0435 0.7692 2.8541 34 1 0.7746 -1.1462 4.3154 35 1 2.5287 -1.3062 3.9750 36 1 0.1993 -2.7707 2.7471 37 1 1.8840 -3.3173 2.9762 38 1 3.4057 -3.1138 1.3715 39 1 2.8967 -2.6350 -0.2655 40 1 2.1895 -5.0269 2.3949 41 1 1.1643 -8.0022 -0.3299 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929523047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:06 Heat of formation + Delta-G solvation = -77.844531 kcal Electronic energy + Delta-G solvation = -18958.217557 eV Core-core repulsion = 16257.735139 eV Total energy + Delta-G solvation = -2700.482418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82940 -37.85774 -36.14309 -34.24910 -33.06666 -29.59760 -28.92743 -28.05076 -27.89346 -26.28897 -22.99866 -22.35299 -21.43122 -19.39081 -18.81608 -17.24283 -16.67072 -16.51801 -16.18838 -15.48041 -15.10560 -14.87246 -14.75867 -14.48589 -14.16393 -13.53946 -13.39337 -13.18617 -13.03328 -12.89071 -12.83626 -12.65973 -12.46996 -12.33935 -12.20471 -11.87281 -11.77342 -11.67949 -11.41215 -11.17664 -11.05419 -10.91179 -10.71438 -9.94261 -8.99083 -8.13168 -6.39280 1.38073 1.39219 1.51330 2.37717 3.12033 3.20206 3.76329 3.80186 4.10745 4.16560 4.20313 4.28564 4.34277 4.50879 4.55803 4.62412 4.70390 4.73985 4.88813 4.93041 4.98735 5.02733 5.03698 5.10453 5.15374 5.18199 5.23579 5.30208 5.31769 5.43547 5.48518 5.62079 5.64052 5.71800 5.78417 6.04563 6.37930 6.41934 6.75341 7.33401 7.55218 8.91290 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030812 B = 0.006771 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.514522 B = 4134.086098 C = 4602.976750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.051 4.051 3 C -0.134 4.134 4 C -0.142 4.142 5 C 0.077 3.923 6 H 0.040 0.960 7 C -0.119 4.119 8 C -0.139 4.139 9 C 0.053 3.947 10 N -0.526 5.526 11 C 0.043 3.957 12 C 0.241 3.759 13 H 0.017 0.983 14 O -0.569 6.569 15 C -0.586 4.586 16 H 0.056 0.944 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.348 0.652 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 16.104 3.804 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.052 4.052 3 C -0.191 4.191 4 C -0.199 4.199 5 C -0.031 4.031 6 H 0.058 0.942 7 C -0.156 4.156 8 C -0.177 4.177 9 C -0.075 4.075 10 N -0.250 5.250 11 C -0.085 4.085 12 C 0.183 3.817 13 H 0.034 0.966 14 O -0.373 6.373 15 C -0.625 4.625 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.205 1.205 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.091 0.909 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.575 15.916 3.175 16.239 hybrid contribution 1.729 -1.251 0.118 2.137 sum 2.303 14.664 3.293 15.205 Atomic orbital electron populations 1.21755 0.94340 1.01188 1.01256 1.20419 0.96168 0.95154 0.93444 1.21825 1.00749 0.93990 1.02559 1.21941 1.00002 1.00306 0.97656 1.22674 0.96485 0.88067 0.95885 0.94231 1.22834 1.02321 0.97392 0.93086 1.22834 1.02016 0.94626 0.98228 1.22755 1.00631 0.96966 0.87137 1.63310 1.41220 1.01707 1.18740 1.22876 0.92154 0.94730 0.98762 1.19099 0.92551 0.87726 0.82286 0.96553 1.86590 1.37942 1.88049 1.24712 1.22071 0.98634 0.97070 1.44688 0.92583 1.25883 0.96942 1.00017 0.94739 1.70233 1.20205 1.16545 1.46628 0.85527 0.79391 0.78663 0.78081 1.18810 1.20400 1.20459 0.91778 0.92776 0.94226 0.92860 0.91871 0.91407 0.94025 0.92189 0.93514 0.89809 0.89286 0.89791 0.91556 0.92957 0.93263 0.96566 0.90866 0.80724 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 7.97 71.98 0.57 -2.77 16 2 C -0.05 -1.33 0.64 -52.18 -0.03 -1.36 16 3 C -0.13 -2.60 8.30 71.98 0.60 -2.00 16 4 C -0.14 -4.19 7.10 71.98 0.51 -3.68 16 5 C 0.08 2.20 1.82 45.39 0.08 2.28 16 6 H 0.04 1.18 7.81 -2.39 -0.02 1.16 16 7 C -0.12 -2.73 5.44 31.98 0.17 -2.55 16 8 C -0.14 -3.50 6.94 31.78 0.22 -3.28 16 9 C 0.05 1.82 5.51 86.65 0.48 2.30 16 10 N -0.53 -19.15 3.80 -860.64 -3.27 -22.42 16 11 C 0.04 1.83 3.79 86.30 0.33 2.16 16 12 C 0.24 12.73 3.08 29.85 0.09 12.82 16 13 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 14 O -0.57 -29.87 10.34 -148.98 -1.54 -31.41 16 15 C -0.59 -32.96 8.76 25.60 0.22 -32.73 16 16 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 17 C 0.03 1.51 5.40 84.65 0.46 1.97 16 18 N -0.90 -54.89 12.84 21.44 0.28 -54.61 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H 0.06 1.46 6.02 -2.38 -0.01 1.44 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.29 7.65 -2.39 -0.02 1.27 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.13 7.33 -2.39 -0.02 1.11 16 29 H 0.04 1.52 6.16 -2.39 -0.01 1.50 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.34 7.95 -2.39 -0.02 1.32 16 32 H 0.08 1.87 5.66 -2.39 -0.01 1.86 16 33 H 0.09 1.64 8.03 -2.38 -0.02 1.62 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.83 5.20 -2.39 -0.01 1.82 16 38 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 39 H 0.07 3.09 5.28 -2.39 -0.01 3.08 16 40 H 0.35 16.43 7.92 -74.06 -0.59 15.84 16 41 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.22 306.77 1.60 -62.62 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.41 Total: 26.57 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.70 Total: -26.84 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.99 Total: -77.03 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.54 Total: -31.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.22 1.60 -62.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929523047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.226 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds