Wall clock time and date at job start Sun Mar 29 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47308 * 2 1 4 4 C 1.53005 * 109.47200 * 239.99787 * 2 1 3 5 5 C 1.53006 * 109.46970 * 120.00457 * 2 1 3 6 6 H 1.08999 * 110.36495 * 303.86753 * 5 2 1 7 7 C 1.54379 * 110.51055 * 181.45326 * 5 2 1 8 8 C 1.54255 * 105.06098 * 217.31448 * 7 5 2 9 9 C 1.54386 * 105.06197 * 0.02562 * 8 7 5 10 10 N 1.48555 * 110.41428 * 66.21844 * 5 2 1 11 11 C 1.46893 * 111.00127 * 277.93829 * 10 5 2 12 12 C 1.53003 * 109.47373 * 173.57669 * 11 10 5 13 13 H 1.09004 * 109.46277 * 59.99920 * 12 11 10 14 14 O 1.42898 * 109.47072 * 300.00346 * 12 11 10 15 15 C 1.50694 * 109.47183 * 179.97438 * 12 11 10 16 16 H 1.07999 * 120.00095 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99969 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99778 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00159 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47279 * 119.99972 * 19 17 15 22 22 H 1.48506 * 109.46973 * 239.99825 * 19 17 15 23 23 H 1.08995 * 109.46953 * 282.28333 * 1 2 3 24 24 H 1.08995 * 109.47190 * 42.28539 * 1 2 3 25 25 H 1.09001 * 109.47233 * 162.28456 * 1 2 3 26 26 H 1.09000 * 109.47364 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47173 * 300.00188 * 3 2 1 28 28 H 1.09008 * 109.46860 * 60.00235 * 3 2 1 29 29 H 1.08993 * 109.47585 * 293.90600 * 4 2 1 30 30 H 1.09007 * 109.46689 * 53.90834 * 4 2 1 31 31 H 1.09004 * 109.46773 * 173.90181 * 4 2 1 32 32 H 1.09003 * 110.32375 * 336.20863 * 7 5 2 33 33 H 1.09006 * 110.32682 * 98.42060 * 7 5 2 34 34 H 1.09000 * 110.32616 * 118.89576 * 8 7 5 35 35 H 1.08998 * 110.32486 * 241.00085 * 8 7 5 36 36 H 1.08997 * 110.41005 * 265.07821 * 9 8 7 37 37 H 1.08994 * 110.41270 * 142.62828 * 9 8 7 38 38 H 1.09001 * 109.47034 * 53.57719 * 11 10 5 39 39 H 1.09002 * 109.47417 * 293.57982 * 11 10 5 40 40 H 0.96697 * 113.99849 * 299.99196 * 14 12 11 41 41 H 0.96997 * 120.00134 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.6295 -0.2604 2.1476 7 6 3.5831 -0.7037 1.2920 8 6 3.9839 -2.0784 1.8655 9 6 2.6493 -2.8114 2.1205 10 7 1.6833 -2.1626 1.1973 11 6 0.3009 -2.3792 1.6440 12 6 -0.0818 -3.8446 1.4263 13 1 0.5897 -4.4842 1.9991 14 8 0.0256 -4.1637 0.0376 15 6 -1.4998 -4.0670 1.8852 16 1 -2.0712 -3.2453 2.2911 17 6 -2.0678 -5.3195 1.7869 18 7 -1.3722 -6.3199 1.2922 19 14 -3.8258 -5.5950 2.3551 20 1 -4.3862 -4.3188 2.8674 21 1 -4.6459 -6.0733 1.2132 22 1 -3.8426 -6.6122 3.4370 23 1 -0.3633 0.2186 1.0041 24 1 -0.3633 0.7602 -0.6914 25 1 -0.3634 -0.9789 -0.3127 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.7686 -1.7756 -1.1964 30 1 1.5903 -0.2743 -2.1359 31 1 3.1246 -0.6277 -1.3055 32 1 3.9882 -0.5798 0.2877 33 1 3.9347 0.0957 1.9443 34 1 4.5858 -2.6293 1.1428 35 1 4.5338 -1.9538 2.7984 36 1 2.3337 -2.6776 3.1552 37 1 2.7468 -3.8713 1.8859 38 1 -0.3705 -1.7395 1.0713 39 1 0.2189 -2.1358 2.7033 40 1 -0.5455 -3.6319 -0.5334 41 1 -0.4594 -6.1768 0.9968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929523048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:09 Heat of formation + Delta-G solvation = -63.371437 kcal Electronic energy + Delta-G solvation = -19043.530197 eV Core-core repulsion = 16343.675379 eV Total energy + Delta-G solvation = -2699.854817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.63829 -36.09189 -35.12616 -32.06008 -31.80234 -27.87513 -27.46139 -26.99502 -26.96112 -24.06087 -21.86178 -20.93755 -19.92339 -18.31548 -17.12576 -15.97916 -15.46934 -14.70451 -14.35057 -13.82205 -13.72077 -13.68082 -13.39066 -13.11562 -12.74129 -12.29225 -12.17939 -12.13403 -11.81277 -11.47329 -11.26416 -11.21518 -10.95185 -10.78085 -10.66180 -10.62825 -10.21217 -10.12559 -10.10465 -10.08076 -9.80674 -9.02187 -8.42090 -7.97041 -7.76614 -6.31002 -4.14032 3.43242 3.46838 3.60030 4.39205 4.56280 4.79948 4.89025 5.16193 5.19069 5.26434 5.35652 5.41418 5.60547 5.66619 5.72854 5.79580 5.88062 5.96010 5.99177 6.02732 6.04727 6.07535 6.10731 6.16106 6.26382 6.31191 6.36488 6.45526 6.46874 6.54138 6.65139 6.81777 6.85592 7.35214 7.62071 7.65814 8.09446 8.41318 8.91034 9.28694 9.72652 11.09220 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031241 B = 0.006855 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.055189 B = 4083.394076 C = 4474.230869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.134 4.134 5 C 0.069 3.931 6 H 0.041 0.959 7 C -0.120 4.120 8 C -0.123 4.123 9 C 0.035 3.965 10 N -0.487 5.487 11 C 0.009 3.991 12 C 0.224 3.776 13 H 0.043 0.957 14 O -0.570 6.570 15 C -0.651 4.651 16 H 0.047 0.953 17 C 0.035 3.965 18 N -0.895 5.895 19 Si 1.070 2.930 20 H -0.291 1.291 21 H -0.286 1.286 22 H -0.287 1.287 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.349 0.651 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.834 13.117 -1.218 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.052 4.052 3 C -0.198 4.198 4 C -0.191 4.191 5 C -0.040 4.040 6 H 0.059 0.941 7 C -0.158 4.158 8 C -0.161 4.161 9 C -0.093 4.093 10 N -0.210 5.210 11 C -0.119 4.119 12 C 0.166 3.834 13 H 0.061 0.939 14 O -0.373 6.373 15 C -0.689 4.689 16 H 0.065 0.935 17 C -0.174 4.174 18 N -0.529 5.529 19 Si 0.899 3.101 20 H -0.217 1.217 21 H -0.213 1.213 22 H -0.214 1.214 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.193 0.807 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.138 11.307 -1.371 13.442 hybrid contribution 0.604 1.971 0.799 2.211 sum 7.742 13.278 -0.572 15.381 Atomic orbital electron populations 1.22118 0.94854 1.02272 1.01022 1.20372 0.95406 0.93993 0.95405 1.21910 1.00802 0.95880 1.01204 1.21813 0.99660 1.02500 0.95094 1.22675 0.94480 0.90801 0.96074 0.94118 1.22390 0.95323 0.96740 1.01325 1.22283 0.97398 0.96110 1.00347 1.23042 0.91816 0.99905 0.94565 1.65341 1.03173 1.05848 1.46687 1.23492 0.88513 1.02324 0.97541 1.19405 0.95355 0.88266 0.80370 0.93944 1.86470 1.67203 1.64548 1.19077 1.22512 0.99628 0.98193 1.48579 0.93452 1.25741 1.05243 0.92269 0.94159 1.70562 1.12756 1.33497 1.36112 0.83561 0.74819 0.75205 0.76531 1.21667 1.21277 1.21361 0.93202 0.93346 0.90855 0.92753 0.92824 0.93225 0.90052 0.94015 0.93530 0.90764 0.92294 0.91393 0.92147 0.94641 0.90168 0.89596 0.95850 0.80696 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 7.04 37.16 0.26 -1.83 16 2 C -0.05 -0.69 0.62 -154.51 -0.10 -0.79 16 3 C -0.14 -1.57 8.15 37.15 0.30 -1.27 16 4 C -0.13 -1.85 7.95 37.16 0.30 -1.55 16 5 C 0.07 1.02 1.70 -66.07 -0.11 0.91 16 6 H 0.04 0.64 7.95 -51.93 -0.41 0.23 16 7 C -0.12 -1.55 5.28 -25.35 -0.13 -1.68 16 8 C -0.12 -1.68 7.00 -25.35 -0.18 -1.86 16 9 C 0.03 0.60 5.78 -2.19 -0.01 0.59 16 10 N -0.49 -8.75 3.83 -222.16 -0.85 -9.60 16 11 C 0.01 0.19 4.12 -3.83 -0.02 0.17 16 12 C 0.22 5.67 2.44 -27.88 -0.07 5.60 16 13 H 0.04 1.19 7.17 -51.93 -0.37 0.81 16 14 O -0.57 -14.53 11.88 -35.23 -0.42 -14.95 16 15 C -0.65 -18.24 8.76 -34.44 -0.30 -18.55 16 16 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 17 C 0.03 1.00 5.40 -17.82 -0.10 0.90 16 18 N -0.89 -27.59 13.53 55.43 0.75 -26.84 16 19 Si 1.07 25.36 29.90 -169.99 -5.08 20.27 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H 0.05 0.73 7.57 -51.93 -0.39 0.34 16 24 H 0.05 0.61 8.01 -51.93 -0.42 0.19 16 25 H 0.07 1.20 6.26 -51.93 -0.33 0.87 16 26 H 0.05 0.56 7.01 -51.93 -0.36 0.20 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.08 1.36 7.28 -51.93 -0.38 0.98 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.60 6.41 -51.93 -0.33 0.26 16 32 H 0.07 0.92 5.65 -51.93 -0.29 0.63 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.62 7.80 -51.93 -0.41 0.21 16 37 H 0.08 1.51 7.78 -51.93 -0.40 1.10 16 38 H 0.09 1.73 3.83 -51.93 -0.20 1.53 16 39 H 0.02 0.51 7.85 -51.93 -0.41 0.10 16 40 H 0.35 8.13 9.04 45.56 0.41 8.55 16 41 H 0.29 8.98 6.47 -40.82 -0.26 8.72 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -30.09 307.39 -7.42 -37.50 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.29 Total: 8.33 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -0.15 Total: -19.35 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.10 Total: -36.44 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.42 Total: -14.95 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.09 -7.42 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929523048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.867 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds