Wall clock time and date at job start Sun Mar 29 2020 22:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47308 * 2 1 4 4 C 1.53005 * 109.47200 * 239.99787 * 2 1 3 5 5 C 1.53006 * 109.46970 * 120.00457 * 2 1 3 6 6 H 1.08999 * 110.36495 * 303.86753 * 5 2 1 7 7 C 1.54379 * 110.51055 * 181.45326 * 5 2 1 8 8 C 1.54255 * 105.06098 * 217.31448 * 7 5 2 9 9 C 1.54386 * 105.06197 * 0.02562 * 8 7 5 10 10 N 1.48555 * 110.41428 * 66.21844 * 5 2 1 11 11 C 1.46893 * 111.00127 * 277.93829 * 10 5 2 12 12 C 1.53003 * 109.47373 * 173.57669 * 11 10 5 13 13 H 1.09004 * 109.46277 * 59.99920 * 12 11 10 14 14 O 1.42898 * 109.47072 * 300.00346 * 12 11 10 15 15 C 1.50694 * 109.47183 * 179.97438 * 12 11 10 16 16 H 1.07999 * 120.00095 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99969 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99778 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00159 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47279 * 119.99972 * 19 17 15 22 22 H 1.48506 * 109.46973 * 239.99825 * 19 17 15 23 23 H 1.08995 * 109.46953 * 282.28333 * 1 2 3 24 24 H 1.08995 * 109.47190 * 42.28539 * 1 2 3 25 25 H 1.09001 * 109.47233 * 162.28456 * 1 2 3 26 26 H 1.09000 * 109.47364 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47173 * 300.00188 * 3 2 1 28 28 H 1.09008 * 109.46860 * 60.00235 * 3 2 1 29 29 H 1.08993 * 109.47585 * 293.90600 * 4 2 1 30 30 H 1.09007 * 109.46689 * 53.90834 * 4 2 1 31 31 H 1.09004 * 109.46773 * 173.90181 * 4 2 1 32 32 H 1.09003 * 110.32375 * 336.20863 * 7 5 2 33 33 H 1.09006 * 110.32682 * 98.42060 * 7 5 2 34 34 H 1.09000 * 110.32616 * 118.89576 * 8 7 5 35 35 H 1.08998 * 110.32486 * 241.00085 * 8 7 5 36 36 H 1.08997 * 110.41005 * 265.07821 * 9 8 7 37 37 H 1.08994 * 110.41270 * 142.62828 * 9 8 7 38 38 H 1.09001 * 109.47034 * 53.57719 * 11 10 5 39 39 H 1.09002 * 109.47417 * 293.57982 * 11 10 5 40 40 H 0.96697 * 113.99849 * 299.99196 * 14 12 11 41 41 H 0.96997 * 120.00134 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.6295 -0.2604 2.1476 7 6 3.5831 -0.7037 1.2920 8 6 3.9839 -2.0784 1.8655 9 6 2.6493 -2.8114 2.1205 10 7 1.6833 -2.1626 1.1973 11 6 0.3009 -2.3792 1.6440 12 6 -0.0818 -3.8446 1.4263 13 1 0.5897 -4.4842 1.9991 14 8 0.0256 -4.1637 0.0376 15 6 -1.4998 -4.0670 1.8852 16 1 -2.0712 -3.2453 2.2911 17 6 -2.0678 -5.3195 1.7869 18 7 -1.3722 -6.3199 1.2922 19 14 -3.8258 -5.5950 2.3551 20 1 -4.3862 -4.3188 2.8674 21 1 -4.6459 -6.0733 1.2132 22 1 -3.8426 -6.6122 3.4370 23 1 -0.3633 0.2186 1.0041 24 1 -0.3633 0.7602 -0.6914 25 1 -0.3634 -0.9789 -0.3127 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.7686 -1.7756 -1.1964 30 1 1.5903 -0.2743 -2.1359 31 1 3.1246 -0.6277 -1.3055 32 1 3.9882 -0.5798 0.2877 33 1 3.9347 0.0957 1.9443 34 1 4.5858 -2.6293 1.1428 35 1 4.5338 -1.9538 2.7984 36 1 2.3337 -2.6776 3.1552 37 1 2.7468 -3.8713 1.8859 38 1 -0.3705 -1.7395 1.0713 39 1 0.2189 -2.1358 2.7033 40 1 -0.5455 -3.6319 -0.5334 41 1 -0.4594 -6.1768 0.9968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929523048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:08 Heat of formation + Delta-G solvation = -83.896786 kcal Electronic energy + Delta-G solvation = -19044.420243 eV Core-core repulsion = 16343.675379 eV Total energy + Delta-G solvation = -2700.744863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92985 -37.98752 -36.40948 -34.25130 -33.32125 -29.41140 -28.98427 -28.12571 -27.97102 -26.00183 -23.56375 -22.21747 -21.44622 -19.69459 -19.04895 -17.39586 -17.00177 -16.25511 -15.93681 -15.70338 -15.37357 -14.83368 -14.73348 -14.50861 -14.18055 -14.08253 -13.71076 -13.41228 -13.00497 -12.78821 -12.65724 -12.52067 -12.38444 -12.25229 -12.10156 -11.94664 -11.92145 -11.75338 -11.46722 -11.21807 -11.19806 -10.86465 -10.62273 -10.03879 -9.27932 -8.62710 -6.47314 1.50639 1.59945 1.76036 2.53696 3.07103 3.17221 3.63158 3.72240 3.94670 4.07258 4.10111 4.15543 4.24814 4.36921 4.42535 4.50870 4.59814 4.63524 4.76312 4.83294 4.89619 4.90953 4.94728 4.98916 5.00369 5.11053 5.15419 5.20322 5.27953 5.29417 5.40878 5.46577 5.58047 5.70010 5.83941 6.03623 6.11882 6.24614 6.55746 7.24720 7.51199 8.74789 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031241 B = 0.006855 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.055189 B = 4083.394076 C = 4474.230869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.134 4.134 4 C -0.128 4.128 5 C 0.065 3.935 6 H 0.035 0.965 7 C -0.112 4.112 8 C -0.115 4.115 9 C 0.028 3.972 10 N -0.495 5.495 11 C 0.028 3.972 12 C 0.226 3.774 13 H 0.008 0.992 14 O -0.578 6.578 15 C -0.660 4.660 16 H 0.047 0.953 17 C -0.017 4.017 18 N -0.921 5.921 19 Si 1.120 2.880 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.280 1.280 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.011 0.989 40 H 0.357 0.643 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 15.452 -1.320 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 C -0.192 4.192 4 C -0.185 4.185 5 C -0.043 4.043 6 H 0.053 0.947 7 C -0.150 4.150 8 C -0.153 4.153 9 C -0.100 4.100 10 N -0.218 5.218 11 C -0.100 4.100 12 C 0.168 3.832 13 H 0.026 0.974 14 O -0.383 6.383 15 C -0.698 4.698 16 H 0.066 0.934 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.942 3.058 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.206 1.206 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.029 0.971 40 H 0.203 0.797 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.501 13.666 -1.477 15.659 hybrid contribution 0.534 1.256 0.814 1.589 sum 8.034 14.922 -0.664 16.961 Atomic orbital electron populations 1.22079 0.95761 1.01309 1.00993 1.20409 0.94692 0.95621 0.94380 1.21851 1.01636 0.93630 1.02045 1.21733 1.00588 1.00399 0.95791 1.22820 0.96320 0.88465 0.96680 0.94711 1.22401 0.93275 0.96819 1.02522 1.22257 0.95192 0.96113 1.01718 1.23066 0.94061 0.98973 0.93924 1.65281 1.01493 1.08486 1.46544 1.23120 0.90923 0.99099 0.96882 1.19233 0.93616 0.90511 0.79818 0.97418 1.86420 1.67462 1.65166 1.19226 1.22893 1.00788 0.98234 1.47904 0.93427 1.27306 1.08952 0.92225 0.93440 1.70713 1.12200 1.34352 1.38446 0.82921 0.70142 0.76174 0.76593 1.19592 1.20344 1.20565 0.93884 0.91395 0.93488 0.91393 0.91655 0.92785 0.93468 0.92862 0.92212 0.89695 0.89765 0.90989 0.89947 0.95471 0.93010 0.88755 0.97123 0.79731 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 7.04 71.98 0.51 -3.46 16 2 C -0.05 -1.26 0.62 -52.18 -0.03 -1.29 16 3 C -0.13 -2.50 8.15 71.98 0.59 -1.91 16 4 C -0.13 -3.31 7.95 71.98 0.57 -2.74 16 5 C 0.07 1.86 1.70 45.07 0.08 1.93 16 6 H 0.03 1.04 7.95 -2.39 -0.02 1.03 16 7 C -0.11 -2.56 5.28 31.49 0.17 -2.39 16 8 C -0.11 -2.93 7.00 31.49 0.22 -2.71 16 9 C 0.03 0.99 5.78 86.46 0.50 1.49 16 10 N -0.49 -17.98 3.83 -856.79 -3.28 -21.26 16 11 C 0.03 1.20 4.12 86.31 0.36 1.56 16 12 C 0.23 11.95 2.44 29.85 0.07 12.02 16 13 H 0.01 0.47 7.17 -2.39 -0.02 0.46 16 14 O -0.58 -30.74 11.88 -148.98 -1.77 -32.51 16 15 C -0.66 -37.81 8.76 25.60 0.22 -37.59 16 16 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 17 C -0.02 -1.02 5.40 84.66 0.46 -0.56 16 18 N -0.92 -58.38 13.53 21.45 0.29 -58.09 16 19 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H 0.04 1.22 7.57 -2.39 -0.02 1.20 16 24 H 0.07 1.57 8.01 -2.39 -0.02 1.55 16 25 H 0.05 1.53 6.26 -2.39 -0.01 1.51 16 26 H 0.07 1.10 7.01 -2.39 -0.02 1.09 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 1.55 7.28 -2.39 -0.02 1.54 16 30 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.06 1.37 6.41 -2.39 -0.02 1.36 16 32 H 0.08 1.79 5.65 -2.39 -0.01 1.77 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 0.98 7.80 -2.39 -0.02 0.96 16 37 H 0.05 2.07 7.78 -2.39 -0.02 2.05 16 38 H 0.09 3.88 3.83 -2.39 -0.01 3.87 16 39 H 0.01 0.47 7.85 -2.39 -0.02 0.46 16 40 H 0.36 17.28 9.04 -74.06 -0.67 16.61 16 41 H 0.27 17.58 6.47 -92.71 -0.60 16.98 16 Total: -1.00 -66.46 307.39 1.50 -64.97 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.50 Total: 29.59 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 3.71 Total: -35.66 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.99 Total: -79.35 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.77 Total: -32.51 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -66.46 1.50 -64.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929523048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.931 kcal (2) G-P(sol) polarization free energy of solvation -66.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds