Wall clock time and date at job start Sun Mar 29 2020 22:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46903 * 2 1 4 4 C 1.52998 * 109.47297 * 120.00169 * 2 1 3 5 5 H 1.09001 * 109.45238 * 60.98237 * 4 2 1 6 6 C 1.53035 * 109.46479 * 301.00740 * 4 2 1 7 7 C 1.53119 * 109.27896 * 180.80464 * 6 4 2 8 8 C 1.53118 * 109.21093 * 57.62639 * 7 6 4 9 9 C 1.53043 * 109.27291 * 302.43513 * 8 7 6 10 10 N 1.46848 * 109.57410 * 59.08918 * 9 8 7 11 11 C 1.46902 * 110.99932 * 174.19331 * 10 9 8 12 12 C 1.53003 * 109.46863 * 294.23736 * 11 10 9 13 13 H 1.08994 * 109.47155 * 59.99991 * 12 11 10 14 14 O 1.42901 * 109.47475 * 299.99904 * 12 11 10 15 15 C 1.50706 * 109.46912 * 180.02562 * 12 11 10 16 16 H 1.07998 * 120.00081 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99900 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99687 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 119.99902 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46855 * 90.00355 * 19 17 15 21 21 H 1.48495 * 109.47324 * 210.00056 * 19 17 15 22 22 H 1.48499 * 109.47534 * 330.00412 * 19 17 15 23 23 H 1.09002 * 109.46893 * 299.99502 * 1 2 3 24 24 H 1.08998 * 109.47362 * 59.99971 * 1 2 3 25 25 H 1.09003 * 109.46561 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46893 * 240.00498 * 2 1 3 27 27 H 1.09001 * 109.47830 * 300.00389 * 3 2 1 28 28 H 1.09000 * 109.47458 * 60.00488 * 3 2 1 29 29 H 1.09000 * 109.47510 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.50079 * 60.86098 * 6 4 2 31 31 H 1.09004 * 109.49912 * 300.74870 * 6 4 2 32 32 H 1.09003 * 109.51951 * 177.55715 * 7 6 4 33 33 H 1.08996 * 109.52173 * 297.68576 * 7 6 4 34 34 H 1.08997 * 109.51044 * 62.31401 * 8 7 6 35 35 H 1.09003 * 109.50003 * 182.44043 * 8 7 6 36 36 H 1.08997 * 109.41551 * 299.07149 * 9 8 7 37 37 H 1.09004 * 109.45621 * 179.13049 * 9 8 7 38 38 H 1.09000 * 109.47414 * 54.23919 * 11 10 9 39 39 H 1.08999 * 109.47294 * 174.24267 * 11 10 9 40 40 H 0.96698 * 114.00073 * 300.00668 * 14 12 11 41 41 H 0.96997 * 119.99658 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6910 -1.7538 1.2401 6 6 1.5093 -0.0146 2.4985 7 6 2.0384 -0.7276 3.7459 8 6 3.5692 -0.7365 3.7099 9 6 4.0402 -1.4210 2.4247 10 7 3.5083 -0.7012 1.2605 11 6 4.0520 -1.2479 0.0101 12 6 5.5582 -0.9855 -0.0490 13 1 6.0443 -1.4666 0.7996 14 8 5.7987 0.4223 -0.0003 15 6 6.1158 -1.5458 -1.3321 16 1 5.4614 -2.0400 -2.0349 17 6 7.4613 -1.4274 -1.6087 18 7 8.2582 -0.8260 -0.7526 19 14 8.1526 -2.1225 -3.1987 20 1 8.0970 -1.0837 -4.2585 21 1 9.5624 -2.5376 -2.9859 22 1 7.3479 -3.2988 -3.6159 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 0.4196 -0.0433 2.4976 31 1 1.8465 1.0220 2.5012 32 1 1.6982 -0.2017 4.6380 33 1 1.6685 -1.7527 3.7640 34 1 3.9398 0.2883 3.7322 35 1 3.9503 -1.2809 4.5740 36 1 3.6819 -2.4503 2.4101 37 1 5.1297 -1.4153 2.3886 38 1 3.8685 -2.3217 -0.0271 39 1 3.5658 -0.7667 -0.8385 40 1 5.3944 0.9158 -0.7270 41 1 9.2047 -0.7424 -0.9474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929668322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:13 Heat of formation + Delta-G solvation = -66.589844 kcal Electronic energy + Delta-G solvation = -18924.117394 eV Core-core repulsion = 16224.123016 eV Total energy + Delta-G solvation = -2699.994378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.38255 -35.68196 -34.73686 -32.71736 -32.00792 -29.18600 -28.07085 -26.90103 -25.03204 -23.61436 -22.72279 -20.15378 -20.08720 -18.48146 -16.92348 -15.47873 -14.96673 -14.72771 -14.53802 -14.23400 -14.16825 -13.61619 -13.18566 -13.08155 -12.87389 -12.38099 -12.33764 -12.01983 -11.70452 -11.42225 -11.08706 -10.91484 -10.83160 -10.78102 -10.70150 -10.65991 -10.49905 -10.20446 -10.02501 -9.87047 -9.54766 -8.86146 -8.51906 -8.02106 -7.48628 -5.96563 -4.14474 3.29301 3.36330 3.38806 4.34950 4.51888 4.97158 5.01037 5.18724 5.28371 5.31015 5.40324 5.48721 5.59252 5.69160 5.85274 5.91017 5.92235 5.96352 6.08149 6.12969 6.14670 6.17673 6.19978 6.28921 6.32809 6.39893 6.49799 6.57962 6.59865 6.64291 6.76487 6.87448 6.93370 7.68478 7.78438 7.85425 7.97462 8.26341 8.89773 9.51123 9.67961 11.07455 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.006866 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.608109 B = 4077.246125 C = 4582.177659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.139 4.139 4 C 0.090 3.910 5 H 0.027 0.973 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.115 4.115 9 C 0.056 3.944 10 N -0.517 5.517 11 C 0.026 3.974 12 C 0.238 3.762 13 H 0.053 0.947 14 O -0.552 6.552 15 C -0.573 4.573 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.019 0.981 37 H 0.084 0.916 38 H 0.021 0.979 39 H 0.070 0.930 40 H 0.340 0.660 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 1.294 5.185 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.019 4.019 5 H 0.045 0.955 6 C -0.150 4.150 7 C -0.157 4.157 8 C -0.152 4.152 9 C -0.071 4.071 10 N -0.241 5.241 11 C -0.101 4.101 12 C 0.180 3.820 13 H 0.070 0.930 14 O -0.354 6.354 15 C -0.612 4.612 16 H 0.071 0.929 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.088 0.912 40 H 0.183 0.817 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.753 1.653 5.831 14.120 hybrid contribution -0.150 -1.326 -1.520 2.023 sum -12.904 0.327 4.311 13.609 Atomic orbital electron populations 1.21893 0.95900 1.01107 1.01486 1.21205 0.94525 0.97670 0.97811 1.21771 1.03344 0.94480 1.00024 1.21579 0.89157 0.96561 0.94601 0.95544 1.21706 0.98963 1.00615 0.93676 1.21579 0.96431 0.99974 0.97739 1.21566 0.94986 1.01843 0.96850 1.22066 1.01085 0.93879 0.90119 1.61929 1.04414 1.55085 1.02680 1.23154 1.00602 0.96095 0.90281 1.19299 0.86080 0.80312 0.96277 0.92968 1.86565 1.78215 1.20255 1.50340 1.21680 0.93743 1.39925 1.05842 0.92874 1.25014 0.97053 0.94183 0.96352 1.70083 1.04341 1.40265 1.34739 0.86707 0.78324 0.79434 0.84090 1.20533 1.21158 1.19952 0.92569 0.92941 0.93325 0.91012 0.94122 0.93190 0.90363 0.92212 0.90804 0.92507 0.92922 0.91076 0.92326 0.96244 0.89770 0.96115 0.91189 0.81671 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.82 37.16 0.33 -1.35 16 2 C -0.09 -1.32 2.22 -90.62 -0.20 -1.52 16 3 C -0.14 -1.98 8.64 37.15 0.32 -1.66 16 4 C 0.09 1.36 1.67 -67.72 -0.11 1.25 16 5 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 6 C -0.11 -1.47 4.66 -26.65 -0.12 -1.60 16 7 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 8 C -0.11 -1.67 6.10 -26.65 -0.16 -1.83 16 9 C 0.06 1.00 5.29 -3.83 -0.02 0.98 16 10 N -0.52 -9.33 3.58 -226.68 -0.81 -10.15 16 11 C 0.03 0.54 4.08 -3.82 -0.02 0.52 16 12 C 0.24 6.03 2.70 -27.88 -0.08 5.96 16 13 H 0.05 1.46 6.43 -51.93 -0.33 1.13 16 14 O -0.55 -14.32 12.59 -35.23 -0.44 -14.76 16 15 C -0.57 -15.81 8.76 -34.44 -0.30 -16.11 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.54 12.84 55.43 0.71 -24.83 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.67 6.44 -51.93 -0.33 0.33 16 29 H 0.08 1.32 7.40 -51.93 -0.38 0.93 16 30 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 31 H 0.07 1.02 6.42 -51.93 -0.33 0.69 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 1.70 6.21 -51.93 -0.32 1.37 16 38 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.07 1.42 5.63 -51.93 -0.29 1.12 16 40 H 0.34 8.01 9.04 45.56 0.41 8.42 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -29.38 308.26 -7.89 -37.26 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.35 Total: 6.44 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.62 Total: -14.89 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.10 Total: -34.97 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.44 Total: -14.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.38 -7.89 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929668322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.328 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds