Wall clock time and date at job start Sun Mar 29 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 H 1.08991 * 108.63967 * 306.74841 * 3 2 1 5 5 C 1.50459 * 108.77087 * 65.00171 * 3 2 1 6 6 C 1.54498 * 108.85502 * 213.06890 * 5 3 2 7 7 C 1.45866 * 111.59220 * 282.80943 * 6 5 3 8 8 N 1.47807 * 112.92064 * 61.32314 * 7 6 5 9 9 C 1.46893 * 110.99842 * 153.86845 * 8 7 6 10 10 C 1.53004 * 109.47285 * 66.05223 * 9 8 7 11 11 H 1.09000 * 109.47211 * 59.98987 * 10 9 8 12 12 O 1.42898 * 109.46678 * 299.99467 * 10 9 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.44266 * 109.46154 * 276.74766 * 8 7 6 22 22 C 1.54062 * 111.98836 * 96.43271 * 21 8 7 23 23 H 1.09005 * 109.47457 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47198 * 299.99950 * 1 2 3 25 25 H 1.08998 * 109.47248 * 59.99461 * 1 2 3 26 26 H 1.08997 * 109.47001 * 240.00273 * 2 1 3 27 27 H 1.08995 * 109.46937 * 120.00108 * 2 1 3 28 28 H 1.09006 * 109.57253 * 93.25496 * 5 3 2 29 29 H 1.09000 * 109.67564 * 332.94522 * 5 3 2 30 30 H 1.08997 * 109.05811 * 162.26382 * 6 5 3 31 31 H 1.09003 * 108.99767 * 43.31014 * 6 5 3 32 32 H 1.09006 * 108.79079 * 300.43549 * 7 6 5 33 33 H 1.08997 * 108.79541 * 182.21499 * 7 6 5 34 34 H 1.09000 * 109.47823 * 306.04584 * 9 8 7 35 35 H 1.09007 * 109.47029 * 186.04353 * 9 8 7 36 36 H 0.96702 * 114.00549 * 300.00185 * 12 10 9 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.08999 * 108.97631 * 217.07953 * 21 8 7 39 39 H 1.09003 * 108.98342 * 335.78451 * 21 8 7 40 40 H 1.09003 * 108.92031 * 198.18951 * 22 21 8 41 41 H 1.09005 * 108.92084 * 79.63662 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5735 1.9769 -0.8275 5 6 1.6338 2.0996 1.2911 6 6 1.3610 3.5969 1.0251 7 6 2.6012 4.3545 0.9002 8 7 3.4428 3.8994 -0.2264 9 6 4.3058 4.9850 -0.7108 10 6 5.3192 5.3539 0.3745 11 1 5.9298 4.4830 0.6127 12 8 4.6254 5.7843 1.5473 13 6 6.2049 6.4672 -0.1227 14 1 6.0598 6.8709 -1.1139 15 6 7.2043 6.9660 0.6854 16 7 7.3812 6.4743 1.8922 17 14 8.3073 8.3407 0.0661 18 1 7.9052 8.7143 -1.3137 19 1 8.1751 9.5210 0.9575 20 1 9.7187 7.8791 0.0620 21 6 4.2267 2.7615 0.1882 22 6 3.5677 1.4289 -0.2160 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4373 1.9988 2.0208 29 1 0.7301 1.6264 1.6753 30 1 0.7767 4.0043 1.8501 31 1 0.7897 3.6950 0.1020 32 1 3.1688 4.2540 1.8255 33 1 2.3568 5.4065 0.7535 34 1 3.6952 5.8559 -0.9490 35 1 4.8350 4.6567 -1.6055 36 1 4.0611 6.5574 1.4091 37 1 8.0846 6.8250 2.4605 38 1 5.2126 2.8235 -0.2725 39 1 4.3415 2.7859 1.2719 40 1 4.0016 0.6253 0.3790 41 1 3.7740 1.2376 -1.2691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929669154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:53 Heat of formation + Delta-G solvation = -66.587967 kcal Electronic energy + Delta-G solvation = -18659.822499 eV Core-core repulsion = 15959.828203 eV Total energy + Delta-G solvation = -2699.994297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.25811 -36.58417 -34.35018 -32.43198 -32.12822 -30.71183 -28.29124 -25.84614 -25.09803 -23.73172 -21.74071 -20.97260 -19.86463 -18.67353 -17.01677 -15.46142 -15.24775 -14.70070 -14.61468 -14.37441 -14.18511 -13.68618 -13.42284 -13.39238 -12.59837 -12.47826 -12.28925 -11.94268 -11.57138 -11.33520 -11.24395 -10.98602 -10.92065 -10.78044 -10.46244 -10.24355 -10.18774 -10.06891 -10.06333 -9.86847 -9.73090 -9.33691 -8.59207 -8.54291 -7.15208 -6.01122 -4.20523 3.25154 3.33730 3.37242 4.37177 4.64413 4.89946 5.01906 5.14239 5.24700 5.34419 5.50590 5.55481 5.67445 5.71628 5.79223 5.91522 5.95880 6.01622 6.03573 6.08638 6.17805 6.24842 6.32330 6.35989 6.42187 6.44086 6.55528 6.64889 6.67757 6.71925 6.79739 6.92422 6.93098 7.58992 7.73592 7.85972 7.95376 8.20977 8.83036 9.33738 9.56116 11.01612 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.005270 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.714827 B = 5312.011690 C = 5450.182374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.074 4.074 4 H 0.072 0.928 5 C -0.113 4.113 6 C -0.112 4.112 7 C 0.057 3.943 8 N -0.528 5.528 9 C 0.027 3.973 10 C 0.198 3.802 11 H 0.056 0.944 12 O -0.563 6.563 13 C -0.571 4.571 14 H 0.056 0.944 15 C 0.079 3.921 16 N -0.860 5.860 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.057 3.943 22 C -0.103 4.103 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.342 0.658 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 -9.240 -2.441 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.093 4.093 4 H 0.090 0.910 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.071 4.071 8 N -0.250 5.250 9 C -0.100 4.100 10 C 0.140 3.860 11 H 0.074 0.926 12 O -0.366 6.366 13 C -0.610 4.610 14 H 0.074 0.926 15 C -0.127 4.127 16 N -0.496 5.496 17 Si 0.715 3.285 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.073 4.073 22 C -0.141 4.141 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.186 0.814 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.107 -9.904 -2.421 15.077 hybrid contribution 1.099 1.540 0.027 1.893 sum -10.007 -8.364 -2.394 13.260 Atomic orbital electron populations 1.21852 0.96361 1.00861 1.01925 1.21697 0.95499 0.97585 1.01336 1.20829 0.95632 0.94408 0.98418 0.90998 1.21476 1.00609 0.95530 0.97451 1.20663 0.98247 0.95322 1.00803 1.20996 0.94140 0.97853 0.94104 1.61872 1.22852 1.06640 1.33666 1.23090 0.95100 0.92630 0.99230 1.20034 0.88598 0.95436 0.81978 0.92638 1.86585 1.63492 1.48410 1.38070 1.21699 1.16961 1.20856 1.01486 0.92554 1.25048 0.96625 0.96380 0.94629 1.70084 1.31010 1.40913 1.07634 0.86639 0.80599 0.82218 0.79062 1.19679 1.20916 1.20923 1.21809 0.95867 0.90605 0.98970 1.22011 0.94708 0.96757 1.00633 0.93428 0.92421 0.92896 0.92520 0.92511 0.92339 0.92263 0.92626 0.92322 0.92308 0.92485 0.92001 0.91476 0.81363 0.93116 0.92096 0.94044 0.92908 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.69 37.16 0.36 -1.13 16 2 C -0.12 -1.36 5.21 -26.73 -0.14 -1.50 16 3 C -0.07 -0.97 1.81 -91.21 -0.17 -1.13 16 4 H 0.07 1.02 7.36 -51.93 -0.38 0.64 16 5 C -0.11 -1.50 4.96 -27.21 -0.14 -1.63 16 6 C -0.11 -1.60 5.53 -29.32 -0.16 -1.76 16 7 C 0.06 0.97 3.46 -6.70 -0.02 0.95 16 8 N -0.53 -9.55 4.45 -239.55 -1.07 -10.62 16 9 C 0.03 0.56 4.86 -3.83 -0.02 0.54 16 10 C 0.20 4.89 2.52 -27.88 -0.07 4.82 16 11 H 0.06 1.53 6.65 -51.93 -0.35 1.18 16 12 O -0.56 -13.90 9.58 -35.23 -0.34 -14.24 16 13 C -0.57 -15.59 8.76 -34.44 -0.30 -15.89 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.08 2.21 5.40 -17.82 -0.10 2.12 16 16 N -0.86 -25.42 12.84 55.43 0.71 -24.71 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.06 1.01 4.00 -4.68 -0.02 0.99 16 22 C -0.10 -1.48 5.49 -25.50 -0.14 -1.62 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.56 6.20 -51.93 -0.32 0.23 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.85 7.15 -51.93 -0.37 0.48 16 29 H 0.06 0.69 5.73 -51.93 -0.30 0.39 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.83 7.58 -51.93 -0.39 0.43 16 32 H 0.06 1.15 5.83 -51.93 -0.30 0.85 16 33 H 0.06 0.99 6.93 -51.93 -0.36 0.63 16 34 H 0.06 1.25 7.89 -51.93 -0.41 0.84 16 35 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 36 H 0.34 7.70 8.45 45.56 0.39 8.08 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.06 1.16 6.81 -51.93 -0.35 0.81 16 39 H 0.04 0.80 6.51 -51.93 -0.34 0.47 16 40 H 0.05 0.71 7.99 -51.93 -0.41 0.29 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -28.83 303.55 -8.45 -37.29 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.41 Total: 6.80 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.91 Total: -15.25 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.35 Total: -35.33 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.34 Total: -14.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.83 -8.45 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929669154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.300 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds