Wall clock time and date at job start Sun Mar 29 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 H 1.08991 * 108.63967 * 306.74841 * 3 2 1 5 5 C 1.50459 * 108.77087 * 65.00171 * 3 2 1 6 6 C 1.54498 * 108.85502 * 213.06890 * 5 3 2 7 7 C 1.45866 * 111.59220 * 282.80943 * 6 5 3 8 8 N 1.47807 * 112.92064 * 61.32314 * 7 6 5 9 9 C 1.46893 * 110.99842 * 153.86845 * 8 7 6 10 10 C 1.53004 * 109.47285 * 66.05223 * 9 8 7 11 11 H 1.09000 * 109.47211 * 59.98987 * 10 9 8 12 12 O 1.42898 * 109.46678 * 299.99467 * 10 9 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.44266 * 109.46154 * 276.74766 * 8 7 6 22 22 C 1.54062 * 111.98836 * 96.43271 * 21 8 7 23 23 H 1.09005 * 109.47457 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47198 * 299.99950 * 1 2 3 25 25 H 1.08998 * 109.47248 * 59.99461 * 1 2 3 26 26 H 1.08997 * 109.47001 * 240.00273 * 2 1 3 27 27 H 1.08995 * 109.46937 * 120.00108 * 2 1 3 28 28 H 1.09006 * 109.57253 * 93.25496 * 5 3 2 29 29 H 1.09000 * 109.67564 * 332.94522 * 5 3 2 30 30 H 1.08997 * 109.05811 * 162.26382 * 6 5 3 31 31 H 1.09003 * 108.99767 * 43.31014 * 6 5 3 32 32 H 1.09006 * 108.79079 * 300.43549 * 7 6 5 33 33 H 1.08997 * 108.79541 * 182.21499 * 7 6 5 34 34 H 1.09000 * 109.47823 * 306.04584 * 9 8 7 35 35 H 1.09007 * 109.47029 * 186.04353 * 9 8 7 36 36 H 0.96702 * 114.00549 * 300.00185 * 12 10 9 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.08999 * 108.97631 * 217.07953 * 21 8 7 39 39 H 1.09003 * 108.98342 * 335.78451 * 21 8 7 40 40 H 1.09003 * 108.92031 * 198.18951 * 22 21 8 41 41 H 1.09005 * 108.92084 * 79.63662 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5735 1.9769 -0.8275 5 6 1.6338 2.0996 1.2911 6 6 1.3610 3.5969 1.0251 7 6 2.6012 4.3545 0.9002 8 7 3.4428 3.8994 -0.2264 9 6 4.3058 4.9850 -0.7108 10 6 5.3192 5.3539 0.3745 11 1 5.9298 4.4830 0.6127 12 8 4.6254 5.7843 1.5473 13 6 6.2049 6.4672 -0.1227 14 1 6.0598 6.8709 -1.1139 15 6 7.2043 6.9660 0.6854 16 7 7.3812 6.4743 1.8922 17 14 8.3073 8.3407 0.0661 18 1 7.9052 8.7143 -1.3137 19 1 8.1751 9.5210 0.9575 20 1 9.7187 7.8791 0.0620 21 6 4.2267 2.7615 0.1882 22 6 3.5677 1.4289 -0.2160 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4373 1.9988 2.0208 29 1 0.7301 1.6264 1.6753 30 1 0.7767 4.0043 1.8501 31 1 0.7897 3.6950 0.1020 32 1 3.1688 4.2540 1.8255 33 1 2.3568 5.4065 0.7535 34 1 3.6952 5.8559 -0.9490 35 1 4.8350 4.6567 -1.6055 36 1 4.0611 6.5574 1.4091 37 1 8.0846 6.8250 2.4605 38 1 5.2126 2.8235 -0.2725 39 1 4.3415 2.7859 1.2719 40 1 4.0016 0.6253 0.3790 41 1 3.7740 1.2376 -1.2691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929669154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:53 Heat of formation + Delta-G solvation = -85.700585 kcal Electronic energy + Delta-G solvation = -18660.651285 eV Core-core repulsion = 15959.828203 eV Total energy + Delta-G solvation = -2700.823082 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66493 -38.10055 -35.92122 -34.27163 -33.71009 -31.92085 -30.00486 -27.45221 -26.28201 -25.40975 -23.14759 -22.34783 -21.18624 -19.99740 -19.08361 -16.80049 -16.71384 -16.69813 -16.24641 -15.73095 -15.57781 -15.27101 -14.86102 -14.70033 -14.08587 -13.81841 -13.45210 -13.35505 -13.03095 -12.87067 -12.84126 -12.51877 -12.38440 -12.28660 -11.97427 -11.83379 -11.55249 -11.39651 -11.29694 -11.21105 -11.01536 -10.91412 -10.73644 -10.48242 -8.86169 -8.12926 -6.41968 1.36820 1.38674 1.50673 2.36663 3.09296 3.18009 3.82946 3.96592 4.10439 4.18050 4.23639 4.28744 4.40568 4.50113 4.56984 4.62856 4.67674 4.74993 4.86002 4.89093 4.96677 5.00532 5.11194 5.14050 5.19943 5.25298 5.28849 5.33239 5.39601 5.54246 5.56462 5.57730 5.65190 5.67520 5.75300 5.98497 6.31555 6.38447 6.72035 7.30273 7.49540 8.87931 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.005270 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.714827 B = 5312.011690 C = 5450.182374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.070 4.070 4 H 0.065 0.935 5 C -0.110 4.110 6 C -0.110 4.110 7 C 0.063 3.937 8 N -0.517 5.517 9 C 0.041 3.959 10 C 0.203 3.797 11 H 0.019 0.981 12 O -0.572 6.572 13 C -0.586 4.586 14 H 0.060 0.940 15 C 0.026 3.974 16 N -0.901 5.901 17 Si 0.959 3.041 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.281 1.281 21 C 0.061 3.939 22 C -0.097 4.097 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.352 0.648 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.017 0.983 40 H 0.062 0.938 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 -9.505 -3.367 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.089 4.089 4 H 0.083 0.917 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.064 4.064 8 N -0.239 5.239 9 C -0.087 4.087 10 C 0.144 3.856 11 H 0.037 0.963 12 O -0.376 6.376 13 C -0.625 4.625 14 H 0.078 0.922 15 C -0.176 4.176 16 N -0.539 5.539 17 Si 0.783 3.217 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.069 4.069 22 C -0.135 4.135 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.457 -10.175 -3.359 16.432 hybrid contribution 1.517 1.607 0.346 2.237 sum -10.940 -8.568 -3.013 14.219 Atomic orbital electron populations 1.21831 0.95156 1.01788 1.02008 1.21646 0.96497 0.95789 1.01760 1.20783 0.94150 0.96035 0.97930 0.91678 1.21467 1.01034 0.95032 0.97204 1.20625 0.96586 0.95688 1.01863 1.20977 0.94794 0.98449 0.92172 1.62030 1.21988 1.05826 1.34058 1.22844 0.94468 0.93739 0.97672 1.19869 0.89281 0.93527 0.82896 0.96344 1.86552 1.63699 1.48959 1.38397 1.22110 1.17449 1.21282 1.01622 0.92216 1.25899 0.98142 0.98896 0.94701 1.70222 1.31963 1.42621 1.09048 0.85524 0.78397 0.78932 0.78801 1.18649 1.20500 1.20633 1.21803 0.95498 0.92323 0.97237 1.21968 0.95927 0.94579 1.01055 0.92143 0.92241 0.92885 0.92030 0.92217 0.94049 0.90023 0.91065 0.91471 0.95272 0.92730 0.91188 0.91542 0.80325 0.93113 0.94197 0.96445 0.91898 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.69 71.98 0.70 -1.78 16 2 C -0.12 -2.31 5.21 30.59 0.16 -2.15 16 3 C -0.07 -1.71 1.81 -11.18 -0.02 -1.73 16 4 H 0.06 1.70 7.36 -2.39 -0.02 1.68 16 5 C -0.11 -2.73 4.96 30.28 0.15 -2.58 16 6 C -0.11 -2.95 5.53 28.92 0.16 -2.79 16 7 C 0.06 2.17 3.46 83.94 0.29 2.46 16 8 N -0.52 -18.76 4.45 -911.81 -4.06 -22.82 16 9 C 0.04 1.71 4.86 86.31 0.42 2.12 16 10 C 0.20 10.32 2.52 29.85 0.08 10.39 16 11 H 0.02 1.08 6.65 -2.39 -0.02 1.07 16 12 O -0.57 -29.08 9.58 -148.98 -1.43 -30.51 16 13 C -0.59 -32.30 8.76 25.60 0.22 -32.07 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.03 1.45 5.40 84.65 0.46 1.91 16 16 N -0.90 -54.33 12.84 21.45 0.28 -54.06 16 17 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 C 0.06 2.21 4.00 87.15 0.35 2.56 16 22 C -0.10 -2.73 5.49 31.39 0.17 -2.55 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.06 0.95 6.20 -2.38 -0.01 0.94 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 1.18 7.15 -2.38 -0.02 1.16 16 29 H 0.08 1.68 5.73 -2.39 -0.01 1.67 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 32 H 0.03 1.18 5.83 -2.38 -0.01 1.16 16 33 H 0.05 1.87 6.93 -2.39 -0.02 1.85 16 34 H 0.07 2.78 7.89 -2.39 -0.02 2.77 16 35 H 0.07 2.75 8.13 -2.38 -0.02 2.73 16 36 H 0.35 16.09 8.45 -74.06 -0.63 15.47 16 37 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.04 1.59 6.81 -2.39 -0.02 1.58 16 39 H 0.02 0.71 6.51 -2.39 -0.02 0.69 16 40 H 0.06 1.64 7.99 -2.39 -0.02 1.62 16 41 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -62.03 303.55 0.32 -61.71 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.37 Total: 26.23 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 3.13 Total: -26.20 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -3.78 Total: -76.88 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.43 Total: -30.51 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -62.03 0.32 -61.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929669154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.987 kcal (2) G-P(sol) polarization free energy of solvation -62.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds