Wall clock time and date at job start Sun Mar 29 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 H 1.09003 * 109.57182 * 55.25163 * 3 2 1 5 5 C 1.54517 * 109.57664 * 295.00662 * 3 2 1 6 6 C 1.45873 * 111.67884 * 162.81288 * 5 3 2 7 7 C 1.53984 * 112.66334 * 61.49704 * 6 5 3 8 8 N 1.44308 * 108.35055 * 278.58820 * 7 6 5 9 9 C 1.46897 * 111.00058 * 221.36451 * 8 7 6 10 10 C 1.53007 * 109.46952 * 164.21882 * 9 8 7 11 11 H 1.09002 * 109.46759 * 57.84072 * 10 9 8 12 12 O 1.42893 * 109.47222 * 297.84090 * 10 9 8 13 13 C 1.50701 * 109.46791 * 177.83878 * 10 9 8 14 14 H 1.08003 * 120.00087 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99539 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00360 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47295 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47320 * 120.00381 * 17 15 13 20 20 H 1.48501 * 109.47206 * 240.00426 * 17 15 13 21 21 C 1.47987 * 113.62691 * 95.34823 * 8 7 6 22 22 C 1.50535 * 109.67674 * 175.56475 * 3 2 1 23 23 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47332 * 299.99583 * 1 2 3 25 25 H 1.09001 * 109.47392 * 59.99674 * 1 2 3 26 26 H 1.09007 * 109.46882 * 240.00601 * 2 1 3 27 27 H 1.08993 * 109.47167 * 120.00553 * 2 1 3 28 28 H 1.08998 * 109.03859 * 42.24015 * 5 3 2 29 29 H 1.09011 * 108.98117 * 283.33694 * 5 3 2 30 30 H 1.09003 * 108.84131 * 300.67101 * 6 5 3 31 31 H 1.08999 * 108.84467 * 182.31880 * 6 5 3 32 32 H 1.08994 * 109.69231 * 38.31382 * 7 6 5 33 33 H 1.09000 * 109.69780 * 158.86489 * 7 6 5 34 34 H 1.08999 * 109.47441 * 284.22412 * 9 8 7 35 35 H 1.08999 * 109.46750 * 44.22420 * 9 8 7 36 36 H 0.96699 * 114.00125 * 304.96849 * 12 10 9 37 37 H 0.96995 * 120.00200 * 180.02562 * 16 15 13 38 38 H 1.09007 * 108.71312 * 197.18586 * 21 8 7 39 39 H 1.08995 * 108.68344 * 79.18726 * 21 8 7 40 40 H 1.09001 * 108.78965 * 332.52060 * 22 3 2 41 41 H 1.08998 * 108.79277 * 90.85696 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9819 0.8439 5 6 1.6324 2.1357 -1.3194 6 6 1.7277 3.5877 -1.2169 7 6 3.1610 4.0692 -0.9255 8 7 3.4046 3.9395 0.4909 9 6 4.1360 5.1038 1.0081 10 6 4.0354 5.1324 2.5346 11 1 4.4336 4.2032 2.9423 12 8 2.6665 5.2734 2.9192 13 6 4.8298 6.2964 3.0685 14 1 5.3535 6.9507 2.3872 15 6 4.8869 6.5268 4.4267 16 7 4.2488 5.7305 5.2562 17 14 5.8709 7.9701 5.0886 18 1 6.4899 8.7074 3.9578 19 1 4.9697 8.8812 5.8387 20 1 6.9351 7.4695 5.9953 21 6 4.0823 2.6776 0.8631 22 6 3.5413 1.4492 0.1096 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.6053 1.8629 -1.5618 29 1 2.2894 1.7918 -2.1183 30 1 1.0721 3.9279 -0.4153 31 1 1.3917 4.0297 -2.1550 32 1 3.8735 3.4571 -1.4784 33 1 3.2654 5.1128 -1.2221 34 1 5.1833 5.0349 0.7141 35 1 3.7029 6.0162 0.5983 36 1 2.2252 6.0401 2.5287 37 1 4.2887 5.8928 6.2117 38 1 3.9555 2.5151 1.9335 39 1 5.1467 2.7772 0.6509 40 1 3.8592 0.5479 0.6338 41 1 3.9667 1.4396 -0.8939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929669156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:55 Heat of formation + Delta-G solvation = -68.400274 kcal Electronic energy + Delta-G solvation = -18471.732486 eV Core-core repulsion = 15771.659602 eV Total energy + Delta-G solvation = -2700.072884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14615 -36.31572 -34.54635 -32.50114 -32.02490 -30.89838 -28.30704 -25.71291 -25.36597 -23.55028 -21.93594 -20.59555 -19.89491 -19.02716 -16.91293 -15.71475 -15.09159 -14.73560 -14.64297 -14.42815 -14.11039 -13.55717 -13.46149 -13.03636 -12.98849 -12.56664 -12.42048 -12.01762 -11.64197 -11.31228 -11.16941 -10.92521 -10.88489 -10.81122 -10.77540 -10.46182 -10.24016 -10.20041 -10.01832 -9.95484 -9.88878 -8.94699 -8.51114 -7.99411 -7.41026 -5.94943 -4.12969 3.29196 3.37352 3.40505 4.36876 4.54506 4.84138 4.94531 5.06480 5.30560 5.31317 5.32867 5.43505 5.56820 5.63794 5.74751 5.84271 5.89738 5.92648 5.97061 6.03419 6.12708 6.21432 6.23342 6.26407 6.34773 6.37018 6.42579 6.55732 6.58852 6.63363 6.75880 6.82858 6.85837 7.69035 7.79596 7.87590 8.02431 8.28578 8.90832 9.52348 9.69591 11.09286 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.005444 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.334013 B = 5142.060692 C = 5395.843345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.087 0.913 5 C -0.107 4.107 6 C -0.114 4.114 7 C 0.064 3.936 8 N -0.537 5.537 9 C 0.035 3.965 10 C 0.238 3.762 11 H 0.053 0.947 12 O -0.553 6.553 13 C -0.573 4.573 14 H 0.053 0.947 15 C 0.081 3.919 16 N -0.858 5.858 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.065 3.935 22 C -0.111 4.111 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.339 0.661 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.062 0.938 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -8.243 -12.327 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.100 4.100 4 H 0.105 0.895 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.065 4.065 8 N -0.261 5.261 9 C -0.092 4.092 10 C 0.180 3.820 11 H 0.071 0.929 12 O -0.354 6.354 13 C -0.612 4.612 14 H 0.072 0.928 15 C -0.125 4.125 16 N -0.494 5.494 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.062 4.062 22 C -0.149 4.149 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.182 0.818 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.684 -8.865 -11.592 15.327 hybrid contribution 1.412 1.362 -0.313 1.987 sum -3.273 -7.503 -11.906 14.448 Atomic orbital electron populations 1.21830 0.96195 1.00909 1.02077 1.21622 0.95760 0.96925 1.01281 1.20930 0.95221 0.94936 0.98899 0.89483 1.20635 1.00771 0.96075 0.96945 1.20492 0.97930 0.95896 1.00951 1.21768 0.95863 0.99589 0.89295 1.60684 1.50841 1.02168 1.12434 1.23163 0.94507 0.90658 1.00890 1.19302 0.80823 0.96618 0.85279 0.92939 1.86589 1.25817 1.48968 1.74022 1.21725 1.33057 1.14127 0.92283 0.92840 1.25008 0.94533 0.95912 0.97081 1.70090 1.40135 1.36645 1.02575 0.86662 0.80042 0.82890 0.79027 1.19794 1.20885 1.20948 1.22356 0.94537 0.88509 1.00798 1.21444 0.96048 0.97547 0.99876 0.93402 0.92513 0.92627 0.92720 0.92187 0.92363 0.93363 0.90883 0.93236 0.95058 0.92234 0.95777 0.92017 0.81790 0.93139 0.90477 0.95806 0.91923 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.71 37.16 0.36 -1.23 16 2 C -0.12 -1.33 5.25 -26.73 -0.14 -1.47 16 3 C -0.08 -1.08 1.88 -91.06 -0.17 -1.25 16 4 H 0.09 1.40 7.79 -51.93 -0.40 1.00 16 5 C -0.11 -1.31 4.69 -29.31 -0.14 -1.45 16 6 C -0.11 -1.54 5.37 -29.59 -0.16 -1.70 16 7 C 0.06 0.97 5.40 -4.70 -0.03 0.95 16 8 N -0.54 -9.75 3.88 -234.59 -0.91 -10.66 16 9 C 0.04 0.73 4.42 -3.82 -0.02 0.72 16 10 C 0.24 6.09 2.79 -27.88 -0.08 6.02 16 11 H 0.05 1.49 6.78 -51.93 -0.35 1.13 16 12 O -0.55 -14.58 12.64 -35.23 -0.45 -15.03 16 13 C -0.57 -15.97 8.79 -34.44 -0.30 -16.27 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 16 N -0.86 -25.79 12.84 55.43 0.71 -25.08 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.07 1.13 4.96 -2.74 -0.01 1.12 16 22 C -0.11 -1.55 4.84 -27.48 -0.13 -1.68 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.55 6.27 -51.93 -0.33 0.22 16 26 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.06 0.68 7.98 -51.93 -0.41 0.26 16 28 H 0.06 0.65 5.98 -51.93 -0.31 0.34 16 29 H 0.05 0.56 7.59 -51.92 -0.39 0.17 16 30 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.46 6.79 -51.93 -0.35 0.11 16 33 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 34 H 0.02 0.51 7.92 -51.93 -0.41 0.10 16 35 H 0.06 1.25 7.61 -51.93 -0.40 0.86 16 36 H 0.34 8.02 9.02 45.56 0.41 8.43 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.52 7.03 -51.93 -0.36 1.16 16 39 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 40 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 41 H 0.05 0.66 6.65 -51.93 -0.35 0.32 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -29.90 310.63 -8.39 -38.30 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.49 Total: 5.48 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.91 Total: -14.05 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.20 Total: -35.74 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.45 Total: -15.03 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.90 -8.39 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929669156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.104 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds