Wall clock time and date at job start Sun Mar 29 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 H 1.09003 * 109.57182 * 55.25163 * 3 2 1 5 5 C 1.54517 * 109.57664 * 295.00662 * 3 2 1 6 6 C 1.45873 * 111.67884 * 162.81288 * 5 3 2 7 7 C 1.53984 * 112.66334 * 61.49704 * 6 5 3 8 8 N 1.44308 * 108.35055 * 278.58820 * 7 6 5 9 9 C 1.46897 * 111.00058 * 221.36451 * 8 7 6 10 10 C 1.53007 * 109.46952 * 164.21882 * 9 8 7 11 11 H 1.09002 * 109.46759 * 57.84072 * 10 9 8 12 12 O 1.42893 * 109.47222 * 297.84090 * 10 9 8 13 13 C 1.50701 * 109.46791 * 177.83878 * 10 9 8 14 14 H 1.08003 * 120.00087 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99539 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00360 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47295 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47320 * 120.00381 * 17 15 13 20 20 H 1.48501 * 109.47206 * 240.00426 * 17 15 13 21 21 C 1.47987 * 113.62691 * 95.34823 * 8 7 6 22 22 C 1.50535 * 109.67674 * 175.56475 * 3 2 1 23 23 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47332 * 299.99583 * 1 2 3 25 25 H 1.09001 * 109.47392 * 59.99674 * 1 2 3 26 26 H 1.09007 * 109.46882 * 240.00601 * 2 1 3 27 27 H 1.08993 * 109.47167 * 120.00553 * 2 1 3 28 28 H 1.08998 * 109.03859 * 42.24015 * 5 3 2 29 29 H 1.09011 * 108.98117 * 283.33694 * 5 3 2 30 30 H 1.09003 * 108.84131 * 300.67101 * 6 5 3 31 31 H 1.08999 * 108.84467 * 182.31880 * 6 5 3 32 32 H 1.08994 * 109.69231 * 38.31382 * 7 6 5 33 33 H 1.09000 * 109.69780 * 158.86489 * 7 6 5 34 34 H 1.08999 * 109.47441 * 284.22412 * 9 8 7 35 35 H 1.08999 * 109.46750 * 44.22420 * 9 8 7 36 36 H 0.96699 * 114.00125 * 304.96849 * 12 10 9 37 37 H 0.96995 * 120.00200 * 180.02562 * 16 15 13 38 38 H 1.09007 * 108.71312 * 197.18586 * 21 8 7 39 39 H 1.08995 * 108.68344 * 79.18726 * 21 8 7 40 40 H 1.09001 * 108.78965 * 332.52060 * 22 3 2 41 41 H 1.08998 * 108.79277 * 90.85696 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9819 0.8439 5 6 1.6324 2.1357 -1.3194 6 6 1.7277 3.5877 -1.2169 7 6 3.1610 4.0692 -0.9255 8 7 3.4046 3.9395 0.4909 9 6 4.1360 5.1038 1.0081 10 6 4.0354 5.1324 2.5346 11 1 4.4336 4.2032 2.9423 12 8 2.6665 5.2734 2.9192 13 6 4.8298 6.2964 3.0685 14 1 5.3535 6.9507 2.3872 15 6 4.8869 6.5268 4.4267 16 7 4.2488 5.7305 5.2562 17 14 5.8709 7.9701 5.0886 18 1 6.4899 8.7074 3.9578 19 1 4.9697 8.8812 5.8387 20 1 6.9351 7.4695 5.9953 21 6 4.0823 2.6776 0.8631 22 6 3.5413 1.4492 0.1096 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.6053 1.8629 -1.5618 29 1 2.2894 1.7918 -2.1183 30 1 1.0721 3.9279 -0.4153 31 1 1.3917 4.0297 -2.1550 32 1 3.8735 3.4571 -1.4784 33 1 3.2654 5.1128 -1.2221 34 1 5.1833 5.0349 0.7141 35 1 3.7029 6.0162 0.5983 36 1 2.2252 6.0401 2.5287 37 1 4.2887 5.8928 6.2117 38 1 3.9555 2.5151 1.9335 39 1 5.1467 2.7772 0.6509 40 1 3.8592 0.5479 0.6338 41 1 3.9667 1.4396 -0.8939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929669156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:55 Heat of formation + Delta-G solvation = -88.531618 kcal Electronic energy + Delta-G solvation = -18472.605447 eV Core-core repulsion = 15771.659602 eV Total energy + Delta-G solvation = -2700.945845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40247 -37.98074 -36.11674 -34.22167 -33.66958 -32.07918 -30.09187 -27.33907 -26.56883 -25.17380 -23.04516 -22.32845 -21.00319 -20.33781 -19.00748 -17.07064 -16.65321 -16.50531 -16.16367 -15.80440 -15.60754 -15.18109 -14.73282 -14.62706 -14.19832 -13.80100 -13.69607 -13.36244 -13.07866 -12.92715 -12.80414 -12.67067 -12.37002 -12.32618 -12.03633 -11.89941 -11.72106 -11.51287 -11.28104 -11.07159 -10.99789 -10.89707 -10.68552 -10.04255 -8.90268 -8.12185 -6.38559 1.39084 1.39965 1.52372 2.38583 3.07175 3.14188 3.75829 3.91539 4.03479 4.12234 4.22328 4.33096 4.35945 4.47664 4.49491 4.57470 4.65484 4.72600 4.78430 4.85285 4.88542 4.96426 5.03042 5.06982 5.14555 5.17486 5.23494 5.32574 5.33534 5.48573 5.54629 5.61744 5.63662 5.75370 5.78391 6.04928 6.29065 6.58093 6.75863 7.35834 7.65375 8.92649 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.005444 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.334013 B = 5142.060692 C = 5395.843345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.050 0.950 5 C -0.105 4.105 6 C -0.108 4.108 7 C 0.061 3.939 8 N -0.545 5.545 9 C 0.052 3.948 10 C 0.240 3.760 11 H 0.015 0.985 12 O -0.569 6.569 13 C -0.589 4.589 14 H 0.058 0.942 15 C 0.026 3.974 16 N -0.901 5.901 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.067 3.933 22 C -0.104 4.104 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.350 0.650 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.020 0.980 40 H 0.071 0.929 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -8.230 -14.362 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.069 0.931 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.067 4.067 8 N -0.270 5.270 9 C -0.075 4.075 10 C 0.182 3.818 11 H 0.033 0.967 12 O -0.372 6.372 13 C -0.627 4.627 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.538 5.538 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.061 4.061 22 C -0.141 4.141 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.194 0.806 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.660 -8.851 -13.653 16.925 hybrid contribution 1.379 1.333 0.320 1.945 sum -3.281 -7.518 -13.332 15.654 Atomic orbital electron populations 1.21818 0.95542 1.01777 1.01738 1.21581 0.96318 0.95377 1.01902 1.20877 0.94421 0.96164 0.98358 0.93114 1.20625 1.02075 0.94992 0.96475 1.20446 0.96028 0.96943 1.01224 1.21894 0.97362 1.00316 0.87115 1.60598 1.50303 1.01370 1.14715 1.22776 0.94803 0.92397 0.97573 1.19131 0.80105 0.94308 0.88298 0.96724 1.86533 1.26264 1.49670 1.74748 1.22126 1.33162 1.14627 0.92816 0.92391 1.25904 0.95544 0.98777 0.97421 1.70236 1.41934 1.38740 1.02907 0.85507 0.78407 0.79184 0.78432 1.18672 1.20401 1.20476 1.22324 0.94629 0.89845 0.99259 1.21405 0.96653 0.95811 1.00248 0.91947 0.94012 0.91814 0.90927 0.92696 0.90882 0.91720 0.93195 0.90792 0.93791 0.91859 0.96109 0.91170 0.80581 0.93057 0.94244 0.96214 0.91020 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.71 71.98 0.70 -2.19 16 2 C -0.11 -2.36 5.25 30.59 0.16 -2.19 16 3 C -0.08 -2.02 1.88 -11.08 -0.02 -2.04 16 4 H 0.05 1.67 7.79 -2.39 -0.02 1.65 16 5 C -0.10 -2.27 4.69 28.93 0.14 -2.14 16 6 C -0.11 -2.69 5.37 28.74 0.15 -2.53 16 7 C 0.06 1.76 5.40 87.12 0.47 2.24 16 8 N -0.55 -19.95 3.88 -896.09 -3.48 -23.43 16 9 C 0.05 2.22 4.42 86.31 0.38 2.60 16 10 C 0.24 12.72 2.79 29.85 0.08 12.80 16 11 H 0.01 0.89 6.78 -2.39 -0.02 0.88 16 12 O -0.57 -31.09 12.64 -148.98 -1.88 -32.98 16 13 C -0.59 -33.28 8.79 25.60 0.22 -33.06 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.03 1.47 5.40 84.66 0.46 1.93 16 16 N -0.90 -55.47 12.84 21.45 0.28 -55.19 16 17 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.07 2.38 4.96 86.41 0.43 2.81 16 22 C -0.10 -2.77 4.84 30.11 0.15 -2.62 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 25 H 0.06 1.10 6.27 -2.39 -0.01 1.09 16 26 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.05 1.18 7.98 -2.39 -0.02 1.16 16 28 H 0.07 1.40 5.98 -2.39 -0.01 1.39 16 29 H 0.06 1.24 7.59 -2.38 -0.02 1.23 16 30 H 0.05 1.48 8.08 -2.39 -0.02 1.46 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.17 6.79 -2.39 -0.02 1.15 16 33 H 0.06 1.77 7.30 -2.39 -0.02 1.76 16 34 H 0.02 0.88 7.92 -2.39 -0.02 0.87 16 35 H 0.07 2.83 7.61 -2.39 -0.02 2.81 16 36 H 0.35 16.96 9.02 -74.06 -0.67 16.29 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.04 1.67 7.03 -2.38 -0.02 1.65 16 39 H 0.02 0.70 7.87 -2.39 -0.02 0.68 16 40 H 0.07 1.78 7.63 -2.39 -0.02 1.76 16 41 H 0.07 1.61 6.65 -2.39 -0.02 1.59 16 Total: -1.00 -65.41 310.63 0.58 -64.83 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.32 Total: 24.98 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.32 Total: -24.40 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -3.21 Total: -78.62 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.88 Total: -32.98 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.41 0.58 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929669156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.703 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds