Wall clock time and date at job start Sun Mar 29 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47266 * 2 1 4 4 C 1.53001 * 109.47471 * 119.99992 * 2 1 3 5 5 C 1.52998 * 109.47591 * 174.15116 * 4 2 1 6 6 H 1.09005 * 110.27310 * 53.12063 * 5 4 2 7 7 C 1.54596 * 110.39086 * 290.97536 * 5 4 2 8 8 C 1.54936 * 102.91747 * 219.08000 * 7 5 4 9 9 N 1.48531 * 103.23134 * 37.41576 * 8 7 5 10 10 C 1.46892 * 111.00457 * 200.27410 * 9 8 7 11 11 C 1.52997 * 109.47505 * 287.39853 * 10 9 8 12 12 H 1.09004 * 109.47254 * 59.99648 * 11 10 9 13 13 O 1.42902 * 109.47095 * 299.99949 * 11 10 9 14 14 C 1.50698 * 109.47396 * 179.97438 * 11 10 9 15 15 H 1.07996 * 119.99853 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99802 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00128 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46795 * 90.00281 * 18 16 14 20 20 H 1.48497 * 109.47139 * 210.00119 * 18 16 14 21 21 H 1.48498 * 109.46783 * 330.00177 * 18 16 14 22 22 C 1.47900 * 105.81820 * 320.79189 * 9 8 7 23 23 H 1.08994 * 109.47290 * 59.04905 * 1 2 3 24 24 H 1.09003 * 109.46982 * 179.04511 * 1 2 3 25 25 H 1.08999 * 109.47625 * 299.04215 * 1 2 3 26 26 H 1.09000 * 109.47070 * 239.99988 * 2 1 3 27 27 H 1.08993 * 109.47487 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47078 * 300.00420 * 3 2 1 29 29 H 1.09008 * 109.46962 * 59.99727 * 3 2 1 30 30 H 1.09003 * 109.47112 * 54.15092 * 4 2 1 31 31 H 1.09006 * 109.46969 * 294.15531 * 4 2 1 32 32 H 1.08997 * 110.72665 * 337.43710 * 7 5 4 33 33 H 1.09006 * 110.72367 * 100.72624 * 7 5 4 34 34 H 1.09004 * 110.67160 * 278.97810 * 8 7 5 35 35 H 1.09002 * 110.66575 * 155.85055 * 8 7 5 36 36 H 1.09007 * 109.47035 * 47.39660 * 10 9 8 37 37 H 1.09004 * 109.47152 * 167.39439 * 10 9 8 38 38 H 0.96704 * 113.99545 * 300.00226 * 13 11 10 39 39 H 0.96999 * 119.99282 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.91844 * 265.97049 * 22 9 8 41 41 H 1.09006 * 109.91791 * 144.67894 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5629 -0.8498 1.1779 6 1 4.0165 0.1256 1.0015 7 6 3.9683 -1.8398 0.0618 8 6 5.1584 -2.6051 0.6931 9 7 4.7564 -2.7447 2.1161 10 6 5.9231 -3.0054 2.9697 11 6 6.4146 -4.4357 2.7388 12 1 6.6949 -4.5592 1.6927 13 8 5.3712 -5.3563 3.0641 14 6 7.6119 -4.7029 3.6140 15 1 7.9852 -3.9298 4.2691 16 6 8.2314 -5.9342 3.5777 17 7 9.2767 -6.1672 4.3412 18 14 7.5862 -7.2713 2.4440 19 1 8.2609 -7.1700 1.1250 20 1 7.8632 -8.6025 3.0408 21 1 6.1215 -7.1042 2.2650 22 6 4.1089 -1.4655 2.4795 23 1 -0.3633 0.5285 -0.8813 24 1 -0.3633 -1.0276 -0.0171 25 1 -0.3634 0.4989 0.8984 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.5937 -1.7142 1.3032 31 1 1.7647 -0.1505 2.1362 32 1 3.1486 -2.5213 -0.1657 33 1 4.2853 -1.3037 -0.8328 34 1 6.0774 -2.0251 0.6081 35 1 5.2759 -3.5842 0.2287 36 1 6.7190 -2.3032 2.7215 37 1 5.6428 -2.8819 4.0158 38 1 5.0711 -5.3023 3.9819 39 1 9.7122 -7.0335 4.3158 40 1 4.8399 -0.7941 2.9299 41 1 3.2903 -1.6483 3.1757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929762544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:18 Heat of formation + Delta-G solvation = -68.028940 kcal Electronic energy + Delta-G solvation = -17986.708346 eV Core-core repulsion = 15286.651564 eV Total energy + Delta-G solvation = -2700.056782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.18174 -36.70831 -35.41205 -32.18518 -31.84452 -29.24556 -28.28321 -27.34713 -25.69384 -23.98763 -21.60834 -20.46926 -19.99360 -19.45107 -17.27723 -15.90462 -15.27717 -15.00385 -14.66366 -14.34668 -14.21502 -13.85957 -13.47903 -13.24371 -12.94800 -12.67255 -12.41589 -12.25628 -11.94527 -11.73374 -11.51967 -11.31249 -11.13061 -10.91946 -10.86354 -10.64994 -10.47508 -10.45784 -10.25207 -10.22266 -9.80013 -8.97778 -8.58052 -8.18582 -7.80020 -6.09703 -4.20638 3.42436 3.51791 3.80671 4.47479 4.55921 4.58200 4.71326 4.76706 4.97287 5.00619 5.22583 5.26390 5.43389 5.47819 5.55065 5.56698 5.61222 5.67990 5.78238 5.83203 5.84663 5.93765 5.97502 5.99435 6.02737 6.10709 6.18242 6.22624 6.26826 6.35818 6.41799 6.47335 6.66281 7.25596 7.44779 7.53432 7.75173 8.33384 8.87311 9.17308 9.55933 11.01059 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051664 B = 0.004660 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.835878 B = 6007.016489 C = 6162.878219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.102 4.102 5 C -0.099 4.099 6 H 0.072 0.928 7 C -0.116 4.116 8 C 0.035 3.965 9 N -0.507 5.507 10 C 0.031 3.969 11 C 0.204 3.796 12 H 0.050 0.950 13 O -0.570 6.570 14 C -0.566 4.566 15 H 0.070 0.930 16 C 0.083 3.917 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.215 1.215 22 C 0.038 3.962 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.353 0.647 39 H 0.264 0.736 40 H 0.036 0.964 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.879 12.645 -8.378 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.140 4.140 5 C -0.118 4.118 6 H 0.090 0.910 7 C -0.154 4.154 8 C -0.093 4.093 9 N -0.231 5.231 10 C -0.097 4.097 11 C 0.146 3.854 12 H 0.068 0.932 13 O -0.375 6.375 14 C -0.604 4.604 15 H 0.088 0.912 16 C -0.121 4.121 17 N -0.533 5.533 18 Si 0.697 3.303 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.137 1.137 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.199 0.801 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.035 11.928 -8.864 21.139 hybrid contribution 0.663 0.235 0.101 0.711 sum -14.371 12.162 -8.762 20.766 Atomic orbital electron populations 1.21839 0.95543 1.01657 1.01404 1.21135 0.95359 0.96236 0.98958 1.21889 1.01227 0.96112 1.01320 1.21697 0.94496 1.00633 0.97166 1.22073 0.95828 0.98617 0.95287 0.91007 1.22561 0.98465 0.97440 0.96951 1.23222 0.95920 1.00130 0.90032 1.64802 1.26499 1.29662 1.02098 1.23004 0.89853 1.00248 0.96550 1.19642 0.85686 0.83674 0.96370 0.93184 1.86659 1.57148 1.61520 1.32170 1.21547 1.12854 1.00365 1.25592 0.91191 1.24990 0.93589 0.98743 0.94786 1.69969 1.20688 1.23651 1.38945 0.87022 0.83430 0.79787 0.80011 1.21518 1.22292 1.13701 1.22936 0.98535 0.90799 0.96793 0.93029 0.92698 0.92863 0.91133 0.92472 0.93133 0.92884 0.91423 0.92187 0.90849 0.91801 0.94235 0.90130 0.94901 0.91454 0.80113 0.92636 0.94522 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.15 0.34 -0.84 16 2 C -0.10 -0.87 2.85 -90.62 -0.26 -1.13 16 3 C -0.15 -1.22 8.98 37.16 0.33 -0.89 16 4 C -0.10 -1.05 3.83 -26.73 -0.10 -1.15 16 5 C -0.10 -1.17 2.87 -89.26 -0.26 -1.43 16 6 H 0.07 0.80 6.37 -51.93 -0.33 0.47 16 7 C -0.12 -1.46 5.78 -24.87 -0.14 -1.61 16 8 C 0.03 0.56 5.91 -1.90 -0.01 0.55 16 9 N -0.51 -8.95 5.11 -230.46 -1.18 -10.13 16 10 C 0.03 0.64 4.31 -3.83 -0.02 0.62 16 11 C 0.20 4.89 2.35 -27.89 -0.07 4.83 16 12 H 0.05 1.25 6.80 -51.93 -0.35 0.89 16 13 O -0.57 -13.47 10.01 -35.23 -0.35 -13.82 16 14 C -0.57 -15.98 9.34 -34.44 -0.32 -16.30 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 17 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 18 Si 0.87 22.26 26.99 -169.99 -4.59 17.67 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 20 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.21 -5.41 5.31 56.52 0.30 -5.11 16 22 C 0.04 0.55 6.32 -2.75 -0.02 0.53 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.65 7.42 -51.93 -0.39 0.27 16 27 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 35 H 0.08 1.38 7.80 -51.93 -0.41 0.98 16 36 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 37 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.35 7.52 9.04 45.56 0.41 7.93 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.04 0.53 7.77 -51.93 -0.40 0.13 16 41 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -30.90 314.93 -8.08 -38.98 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.87 Total: 3.97 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.62 Total: -14.49 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.40 Total: -37.05 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.35 Total: -13.82 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.59 Total: 17.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.90 -8.08 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.052 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds