Wall clock time and date at job start Sun Mar 29 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47266 * 2 1 4 4 C 1.53001 * 109.47471 * 119.99992 * 2 1 3 5 5 C 1.52998 * 109.47591 * 174.15116 * 4 2 1 6 6 H 1.09005 * 110.27310 * 53.12063 * 5 4 2 7 7 C 1.54596 * 110.39086 * 290.97536 * 5 4 2 8 8 C 1.54936 * 102.91747 * 219.08000 * 7 5 4 9 9 N 1.48531 * 103.23134 * 37.41576 * 8 7 5 10 10 C 1.46892 * 111.00457 * 200.27410 * 9 8 7 11 11 C 1.52997 * 109.47505 * 287.39853 * 10 9 8 12 12 H 1.09004 * 109.47254 * 59.99648 * 11 10 9 13 13 O 1.42902 * 109.47095 * 299.99949 * 11 10 9 14 14 C 1.50698 * 109.47396 * 179.97438 * 11 10 9 15 15 H 1.07996 * 119.99853 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99802 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00128 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46795 * 90.00281 * 18 16 14 20 20 H 1.48497 * 109.47139 * 210.00119 * 18 16 14 21 21 H 1.48498 * 109.46783 * 330.00177 * 18 16 14 22 22 C 1.47900 * 105.81820 * 320.79189 * 9 8 7 23 23 H 1.08994 * 109.47290 * 59.04905 * 1 2 3 24 24 H 1.09003 * 109.46982 * 179.04511 * 1 2 3 25 25 H 1.08999 * 109.47625 * 299.04215 * 1 2 3 26 26 H 1.09000 * 109.47070 * 239.99988 * 2 1 3 27 27 H 1.08993 * 109.47487 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47078 * 300.00420 * 3 2 1 29 29 H 1.09008 * 109.46962 * 59.99727 * 3 2 1 30 30 H 1.09003 * 109.47112 * 54.15092 * 4 2 1 31 31 H 1.09006 * 109.46969 * 294.15531 * 4 2 1 32 32 H 1.08997 * 110.72665 * 337.43710 * 7 5 4 33 33 H 1.09006 * 110.72367 * 100.72624 * 7 5 4 34 34 H 1.09004 * 110.67160 * 278.97810 * 8 7 5 35 35 H 1.09002 * 110.66575 * 155.85055 * 8 7 5 36 36 H 1.09007 * 109.47035 * 47.39660 * 10 9 8 37 37 H 1.09004 * 109.47152 * 167.39439 * 10 9 8 38 38 H 0.96704 * 113.99545 * 300.00226 * 13 11 10 39 39 H 0.96999 * 119.99282 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.91844 * 265.97049 * 22 9 8 41 41 H 1.09006 * 109.91791 * 144.67894 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5629 -0.8498 1.1779 6 1 4.0165 0.1256 1.0015 7 6 3.9683 -1.8398 0.0618 8 6 5.1584 -2.6051 0.6931 9 7 4.7564 -2.7447 2.1161 10 6 5.9231 -3.0054 2.9697 11 6 6.4146 -4.4357 2.7388 12 1 6.6949 -4.5592 1.6927 13 8 5.3712 -5.3563 3.0641 14 6 7.6119 -4.7029 3.6140 15 1 7.9852 -3.9298 4.2691 16 6 8.2314 -5.9342 3.5777 17 7 9.2767 -6.1672 4.3412 18 14 7.5862 -7.2713 2.4440 19 1 8.2609 -7.1700 1.1250 20 1 7.8632 -8.6025 3.0408 21 1 6.1215 -7.1042 2.2650 22 6 4.1089 -1.4655 2.4795 23 1 -0.3633 0.5285 -0.8813 24 1 -0.3633 -1.0276 -0.0171 25 1 -0.3634 0.4989 0.8984 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.5937 -1.7142 1.3032 31 1 1.7647 -0.1505 2.1362 32 1 3.1486 -2.5213 -0.1657 33 1 4.2853 -1.3037 -0.8328 34 1 6.0774 -2.0251 0.6081 35 1 5.2759 -3.5842 0.2287 36 1 6.7190 -2.3032 2.7215 37 1 5.6428 -2.8819 4.0158 38 1 5.0711 -5.3023 3.9819 39 1 9.7122 -7.0335 4.3158 40 1 4.8399 -0.7941 2.9299 41 1 3.2903 -1.6483 3.1757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929762544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:18 Heat of formation + Delta-G solvation = -89.660310 kcal Electronic energy + Delta-G solvation = -17987.646353 eV Core-core repulsion = 15286.651564 eV Total energy + Delta-G solvation = -2700.994788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36185 -38.12216 -36.73559 -34.41922 -33.10279 -30.39045 -30.02270 -27.96465 -27.10273 -25.41660 -23.08865 -21.67650 -21.37060 -20.31946 -19.36281 -17.10343 -16.89002 -16.36531 -16.22348 -16.02683 -15.49843 -14.90469 -14.76210 -14.72372 -14.21682 -13.97332 -13.68809 -13.38447 -13.07438 -13.00871 -12.85086 -12.69495 -12.41175 -12.35973 -12.11706 -11.90397 -11.79866 -11.73107 -11.29487 -11.24655 -11.13260 -11.01415 -10.81401 -10.10770 -9.23007 -8.37041 -6.51823 1.38788 1.44179 1.75768 2.43786 3.01176 3.13416 3.64557 3.77334 3.86213 4.09675 4.14094 4.20055 4.32429 4.36298 4.41064 4.55238 4.61226 4.64529 4.75386 4.85476 4.89111 4.93882 4.95887 5.00434 5.04831 5.09141 5.16153 5.22040 5.23941 5.35193 5.42026 5.46799 5.48031 5.57641 5.60376 6.05879 6.11262 6.16381 6.60682 7.21560 7.36943 8.77298 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051664 B = 0.004660 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.835878 B = 6007.016489 C = 6162.878219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.097 4.097 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.106 4.106 8 C 0.028 3.972 9 N -0.518 5.518 10 C 0.045 3.955 11 C 0.213 3.787 12 H 0.044 0.956 13 O -0.572 6.572 14 C -0.569 4.569 15 H 0.035 0.965 16 C 0.029 3.971 17 N -0.940 5.940 18 Si 0.939 3.061 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.207 1.207 22 C 0.035 3.965 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.365 0.635 39 H 0.267 0.733 40 H 0.035 0.965 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 13.347 -9.853 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.134 4.134 5 C -0.109 4.109 6 H 0.102 0.898 7 C -0.144 4.144 8 C -0.100 4.100 9 N -0.242 5.242 10 C -0.083 4.083 11 C 0.155 3.845 12 H 0.062 0.938 13 O -0.378 6.378 14 C -0.607 4.607 15 H 0.054 0.946 16 C -0.171 4.171 17 N -0.579 5.579 18 Si 0.763 3.237 19 H -0.211 1.211 20 H -0.222 1.222 21 H -0.129 1.129 22 C -0.093 4.093 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.212 0.788 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.996 12.648 -10.337 23.573 hybrid contribution 1.277 0.077 0.617 1.420 sum -15.719 12.724 -9.720 22.438 Atomic orbital electron populations 1.21827 0.94893 1.01692 1.01948 1.21107 0.95904 0.96423 0.98000 1.21881 1.01030 0.95693 1.01861 1.21640 0.93095 1.00449 0.98251 1.22042 0.96951 0.98632 0.93322 0.89820 1.22522 0.96864 0.97286 0.97697 1.23295 0.97464 0.99944 0.89330 1.64722 1.24976 1.31950 1.02550 1.22661 0.90833 0.97702 0.97134 1.19412 0.84379 0.85902 0.94841 0.93773 1.86590 1.56547 1.61529 1.33174 1.21868 1.14177 0.99374 1.25258 0.94645 1.25851 0.93759 1.01202 0.96238 1.70086 1.22339 1.24514 1.40970 0.85974 0.83035 0.76751 0.77917 1.21111 1.22184 1.12861 1.23025 0.98341 0.89459 0.98431 0.92206 0.92954 0.92635 0.91272 0.92733 0.92336 0.92685 0.92370 0.91678 0.90777 0.89667 0.94514 0.91577 0.95694 0.91660 0.78842 0.92384 0.94689 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.10 -1.44 2.85 -10.79 -0.03 -1.47 16 3 C -0.15 -2.02 8.98 71.98 0.65 -1.37 16 4 C -0.10 -1.74 3.83 30.59 0.12 -1.62 16 5 C -0.09 -1.92 2.87 -9.91 -0.03 -1.95 16 6 H 0.08 1.62 6.37 -2.38 -0.02 1.60 16 7 C -0.11 -2.41 5.78 31.80 0.18 -2.22 16 8 C 0.03 0.85 5.91 86.65 0.51 1.36 16 9 N -0.52 -17.69 5.11 -883.03 -4.51 -22.20 16 10 C 0.05 1.83 4.31 86.30 0.37 2.21 16 11 C 0.21 10.13 2.35 29.85 0.07 10.20 16 12 H 0.04 2.18 6.80 -2.38 -0.02 2.16 16 13 O -0.57 -26.25 10.01 -148.98 -1.49 -27.74 16 14 C -0.57 -32.63 9.34 25.60 0.24 -32.39 16 15 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 16 C 0.03 1.72 5.47 84.65 0.46 2.18 16 17 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 18 Si 0.94 46.16 26.99 68.60 1.85 48.01 16 19 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.21 -9.81 5.31 99.48 0.53 -9.28 16 22 C 0.04 0.96 6.32 86.45 0.55 1.51 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.07 1.07 7.42 -2.39 -0.02 1.06 16 27 H 0.05 0.77 6.47 -2.39 -0.02 0.76 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 1.17 8.01 -2.39 -0.02 1.15 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.70 7.77 -2.39 -0.02 1.68 16 33 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.04 1.14 7.81 -2.38 -0.02 1.13 16 35 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 36 H 0.02 1.03 7.83 -2.38 -0.02 1.02 16 37 H 0.06 2.63 8.08 -2.38 -0.02 2.61 16 38 H 0.36 15.06 9.04 -74.05 -0.67 14.39 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.03 0.97 7.77 -2.39 -0.02 0.95 16 41 H 0.08 2.05 7.68 -2.38 -0.02 2.03 16 Total: -1.00 -65.58 314.93 0.03 -65.55 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.13 Total: 20.16 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 3.75 Total: -24.90 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -4.21 Total: -81.08 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.49 Total: -27.74 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.85 Total: 48.01 kcal Total: -65.58 0.03 -65.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.110 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds