Wall clock time and date at job start Sun Mar 29 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53007 * 109.46805 * 120.00048 * 2 1 3 5 5 C 1.53003 * 109.47238 * 65.84875 * 4 2 1 6 6 H 1.08994 * 110.27205 * 307.55067 * 5 4 2 7 7 C 1.54596 * 110.30329 * 69.74461 * 5 4 2 8 8 C 1.54941 * 102.91754 * 140.87139 * 7 5 4 9 9 N 1.48528 * 103.22975 * 322.58594 * 8 7 5 10 10 C 1.46897 * 111.00126 * 159.71871 * 9 8 7 11 11 C 1.52997 * 109.46972 * 52.60701 * 10 9 8 12 12 H 1.08997 * 109.47801 * 59.99695 * 11 10 9 13 13 O 1.42899 * 109.47199 * 299.99491 * 11 10 9 14 14 C 1.50703 * 109.47105 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99788 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99997 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00066 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99831 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46752 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47186 * 300.00255 * 18 16 14 21 21 H 1.48498 * 109.46844 * 60.00392 * 18 16 14 22 22 C 1.47904 * 105.81942 * 39.20385 * 9 8 7 23 23 H 1.08999 * 109.46963 * 300.00570 * 1 2 3 24 24 H 1.09000 * 109.46898 * 60.00200 * 1 2 3 25 25 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46963 * 239.99430 * 2 1 3 27 27 H 1.09002 * 109.46857 * 179.68289 * 3 2 1 28 28 H 1.08997 * 109.47420 * 299.68028 * 3 2 1 29 29 H 1.09000 * 109.47360 * 59.68602 * 3 2 1 30 30 H 1.09002 * 109.47084 * 305.85141 * 4 2 1 31 31 H 1.08998 * 109.46789 * 185.85196 * 4 2 1 32 32 H 1.08992 * 110.72694 * 259.22794 * 7 5 4 33 33 H 1.08998 * 110.72937 * 22.33947 * 7 5 4 34 34 H 1.08994 * 110.66620 * 204.14623 * 8 7 5 35 35 H 1.09005 * 110.66298 * 81.01914 * 8 7 5 36 36 H 1.08997 * 109.47583 * 292.60207 * 10 9 8 37 37 H 1.09005 * 109.46748 * 172.60083 * 10 9 8 38 38 H 0.96699 * 113.99857 * 300.00639 * 13 11 10 39 39 H 0.97005 * 120.00187 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.91345 * 94.02642 * 22 9 8 41 41 H 1.08999 * 109.91657 * 215.12006 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6535 -2.2000 1.1780 6 1 0.5848 -2.3024 0.9898 7 6 2.4659 -2.9141 0.0735 8 6 2.7844 -4.2894 0.7121 9 7 3.0324 -3.9531 2.1374 10 6 2.8799 -5.1380 2.9921 11 6 3.7474 -6.2746 2.4477 12 1 4.7920 -5.9634 2.4410 13 8 3.3364 -6.5917 1.1163 14 6 3.5915 -7.4900 3.3249 15 1 2.9393 -7.4551 4.1850 16 6 4.2815 -8.6466 3.0294 17 7 5.0761 -8.6889 1.9824 18 14 4.0888 -10.1529 4.1173 19 1 4.9307 -11.2561 3.5887 20 1 4.5172 -9.8229 5.5003 21 1 2.6656 -10.5770 4.1278 22 6 2.0369 -2.9163 2.4861 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0057 28 1 1.6814 1.9547 -0.8928 29 1 1.6721 1.9580 0.8871 30 1 1.5936 -0.2715 2.1362 31 1 3.1249 -0.6315 1.3032 32 1 1.8660 -3.0372 -0.8281 33 1 3.3823 -2.3665 -0.1465 34 1 3.6743 -4.7268 0.2596 35 1 1.9329 -4.9634 0.6184 36 1 1.8354 -5.4493 2.9988 37 1 3.1935 -4.8961 4.0077 38 1 2.4151 -6.8772 1.0466 39 1 5.5619 -9.5025 1.7747 40 1 1.1552 -3.3815 2.9269 41 1 2.4718 -2.2053 3.1886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929762545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:20 Heat of formation + Delta-G solvation = -69.342341 kcal Electronic energy + Delta-G solvation = -18060.520014 eV Core-core repulsion = 15360.406279 eV Total energy + Delta-G solvation = -2700.113735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08178 -36.68618 -35.03137 -32.14485 -31.60553 -29.09723 -27.89576 -27.28038 -25.54678 -23.87506 -21.39656 -20.44546 -19.99604 -19.34410 -16.98481 -15.77916 -15.14985 -14.85093 -14.59524 -14.19239 -14.00180 -13.76259 -13.60602 -13.09135 -12.73618 -12.55405 -12.31795 -11.83340 -11.71893 -11.57771 -11.39217 -11.07356 -11.02311 -10.89146 -10.83578 -10.68104 -10.42308 -10.35600 -10.26111 -10.03709 -9.81506 -8.95916 -8.55748 -7.96737 -7.69462 -5.99003 -4.17168 3.29716 3.34990 3.36791 4.38089 4.65719 4.73428 4.82931 4.85735 5.12502 5.18874 5.27779 5.34676 5.50040 5.58513 5.68073 5.69772 5.76283 5.80669 5.89883 5.91707 5.98610 6.05226 6.13478 6.20019 6.24762 6.27908 6.33894 6.38009 6.45327 6.52355 6.67578 6.81958 7.02384 7.60692 7.66089 7.78510 7.96605 8.22639 8.85610 9.37122 9.59076 11.05086 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.065204 B = 0.004343 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.317502 B = 6445.277861 C = 6580.499148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.099 4.099 6 H 0.070 0.930 7 C -0.126 4.126 8 C 0.056 3.944 9 N -0.517 5.517 10 C 0.023 3.977 11 C 0.232 3.768 12 H 0.063 0.937 13 O -0.560 6.560 14 C -0.573 4.573 15 H 0.054 0.946 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.890 3.110 19 H -0.286 1.286 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.037 3.963 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.021 0.979 37 H 0.067 0.933 38 H 0.340 0.660 39 H 0.261 0.739 40 H 0.034 0.966 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 15.311 -3.493 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.118 4.118 6 H 0.088 0.912 7 C -0.164 4.164 8 C -0.071 4.071 9 N -0.241 5.241 10 C -0.105 4.105 11 C 0.174 3.826 12 H 0.081 0.919 13 O -0.363 6.363 14 C -0.612 4.612 15 H 0.072 0.928 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.717 3.283 19 H -0.212 1.212 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.184 0.816 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.605 15.558 -3.637 17.288 hybrid contribution -1.549 -1.385 0.862 2.250 sum -8.154 14.172 -2.774 16.584 Atomic orbital electron populations 1.21883 0.95627 1.01774 1.01218 1.21136 0.95629 0.95865 0.99072 1.21840 1.00999 0.96247 1.01315 1.21700 1.01082 0.94167 0.97014 1.22062 0.99484 0.94678 0.95560 0.91210 1.22735 0.99413 0.97376 0.96915 1.23289 1.01670 0.93660 0.88521 1.64812 1.46042 1.09802 1.03427 1.23164 0.98889 0.91423 0.97023 1.19364 0.93916 0.88967 0.80321 0.91947 1.86654 1.30513 1.88225 1.30889 1.21588 1.28991 0.97806 1.12771 0.92814 1.25021 0.94271 0.98680 0.94633 1.70068 1.26483 1.27554 1.25287 0.86732 0.78123 0.82507 0.80961 1.21193 1.20151 1.20235 1.22953 0.94123 0.95346 0.96691 0.92961 0.93174 0.92432 0.91059 0.92716 0.93060 0.92939 0.92394 0.91546 0.92114 0.91322 0.88311 0.94246 0.96060 0.91489 0.81647 0.92955 0.94798 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.98 37.16 0.33 -1.00 16 2 C -0.10 -0.96 2.85 -90.62 -0.26 -1.22 16 3 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 4 C -0.10 -1.14 3.83 -26.73 -0.10 -1.25 16 5 C -0.10 -1.29 2.88 -89.26 -0.26 -1.55 16 6 H 0.07 0.87 6.34 -51.93 -0.33 0.54 16 7 C -0.13 -1.80 5.80 -24.87 -0.14 -1.95 16 8 C 0.06 1.01 4.65 -1.90 -0.01 1.00 16 9 N -0.52 -9.83 5.40 -230.46 -1.24 -11.07 16 10 C 0.02 0.49 4.82 -3.83 -0.02 0.48 16 11 C 0.23 5.92 2.91 -27.88 -0.08 5.84 16 12 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 13 O -0.56 -13.98 8.99 -35.23 -0.32 -14.30 16 14 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.47 12.84 55.43 0.71 -24.76 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.04 0.58 6.35 -2.76 -0.02 0.56 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.54 6.46 -51.93 -0.34 0.21 16 26 H 0.07 0.73 7.44 -51.93 -0.39 0.35 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.80 7.98 -51.93 -0.41 0.39 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.10 2.05 6.83 -51.93 -0.35 1.69 16 35 H 0.04 0.72 6.81 -51.93 -0.35 0.37 16 36 H 0.02 0.45 7.81 -51.93 -0.41 0.04 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.34 7.73 8.33 45.56 0.38 8.11 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.03 0.53 7.57 -51.93 -0.39 0.14 16 41 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -29.18 314.89 -8.48 -37.66 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.74 Total: 5.48 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.61 Total: -14.02 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.53 Total: -35.83 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.32 Total: -14.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.18 -8.48 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.680 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds