Wall clock time and date at job start Sun Mar 29 2020 22:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53007 * 109.46805 * 120.00048 * 2 1 3 5 5 C 1.53003 * 109.47238 * 65.84875 * 4 2 1 6 6 H 1.08994 * 110.27205 * 307.55067 * 5 4 2 7 7 C 1.54596 * 110.30329 * 69.74461 * 5 4 2 8 8 C 1.54941 * 102.91754 * 140.87139 * 7 5 4 9 9 N 1.48528 * 103.22975 * 322.58594 * 8 7 5 10 10 C 1.46897 * 111.00126 * 159.71871 * 9 8 7 11 11 C 1.52997 * 109.46972 * 52.60701 * 10 9 8 12 12 H 1.08997 * 109.47801 * 59.99695 * 11 10 9 13 13 O 1.42899 * 109.47199 * 299.99491 * 11 10 9 14 14 C 1.50703 * 109.47105 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99788 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99997 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00066 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99831 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46752 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47186 * 300.00255 * 18 16 14 21 21 H 1.48498 * 109.46844 * 60.00392 * 18 16 14 22 22 C 1.47904 * 105.81942 * 39.20385 * 9 8 7 23 23 H 1.08999 * 109.46963 * 300.00570 * 1 2 3 24 24 H 1.09000 * 109.46898 * 60.00200 * 1 2 3 25 25 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46963 * 239.99430 * 2 1 3 27 27 H 1.09002 * 109.46857 * 179.68289 * 3 2 1 28 28 H 1.08997 * 109.47420 * 299.68028 * 3 2 1 29 29 H 1.09000 * 109.47360 * 59.68602 * 3 2 1 30 30 H 1.09002 * 109.47084 * 305.85141 * 4 2 1 31 31 H 1.08998 * 109.46789 * 185.85196 * 4 2 1 32 32 H 1.08992 * 110.72694 * 259.22794 * 7 5 4 33 33 H 1.08998 * 110.72937 * 22.33947 * 7 5 4 34 34 H 1.08994 * 110.66620 * 204.14623 * 8 7 5 35 35 H 1.09005 * 110.66298 * 81.01914 * 8 7 5 36 36 H 1.08997 * 109.47583 * 292.60207 * 10 9 8 37 37 H 1.09005 * 109.46748 * 172.60083 * 10 9 8 38 38 H 0.96699 * 113.99857 * 300.00639 * 13 11 10 39 39 H 0.97005 * 120.00187 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.91345 * 94.02642 * 22 9 8 41 41 H 1.08999 * 109.91657 * 215.12006 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6535 -2.2000 1.1780 6 1 0.5848 -2.3024 0.9898 7 6 2.4659 -2.9141 0.0735 8 6 2.7844 -4.2894 0.7121 9 7 3.0324 -3.9531 2.1374 10 6 2.8799 -5.1380 2.9921 11 6 3.7474 -6.2746 2.4477 12 1 4.7920 -5.9634 2.4410 13 8 3.3364 -6.5917 1.1163 14 6 3.5915 -7.4900 3.3249 15 1 2.9393 -7.4551 4.1850 16 6 4.2815 -8.6466 3.0294 17 7 5.0761 -8.6889 1.9824 18 14 4.0888 -10.1529 4.1173 19 1 4.9307 -11.2561 3.5887 20 1 4.5172 -9.8229 5.5003 21 1 2.6656 -10.5770 4.1278 22 6 2.0369 -2.9163 2.4861 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0057 28 1 1.6814 1.9547 -0.8928 29 1 1.6721 1.9580 0.8871 30 1 1.5936 -0.2715 2.1362 31 1 3.1249 -0.6315 1.3032 32 1 1.8660 -3.0372 -0.8281 33 1 3.3823 -2.3665 -0.1465 34 1 3.6743 -4.7268 0.2596 35 1 1.9329 -4.9634 0.6184 36 1 1.8354 -5.4493 2.9988 37 1 3.1935 -4.8961 4.0077 38 1 2.4151 -6.8772 1.0466 39 1 5.5619 -9.5025 1.7747 40 1 1.1552 -3.3815 2.9269 41 1 2.4718 -2.2053 3.1886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929762545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:19 Heat of formation + Delta-G solvation = -88.888505 kcal Electronic energy + Delta-G solvation = -18061.367599 eV Core-core repulsion = 15360.406279 eV Total energy + Delta-G solvation = -2700.961321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42197 -38.08547 -36.48804 -34.28005 -33.01957 -30.41665 -29.63429 -27.96089 -27.01606 -25.42980 -23.03482 -21.81390 -21.33621 -20.31204 -19.05488 -16.97857 -16.73405 -16.60777 -16.14441 -15.83345 -15.46244 -14.88424 -14.79268 -14.45961 -14.05297 -13.91710 -13.36245 -13.17379 -13.05352 -12.86472 -12.81653 -12.71945 -12.58876 -12.35853 -12.06927 -12.04194 -11.87440 -11.66809 -11.26387 -11.19447 -11.07669 -10.97904 -10.71463 -9.93335 -9.21170 -8.14062 -6.40520 1.39996 1.41963 1.50144 2.38032 3.11385 3.27199 3.68368 3.84440 3.91497 4.15462 4.21500 4.22439 4.37530 4.49160 4.50719 4.54415 4.64915 4.74489 4.80283 4.87402 4.90345 5.00079 5.03088 5.04854 5.08136 5.17127 5.20952 5.25294 5.37366 5.39556 5.47645 5.57734 5.60775 5.61971 5.72479 5.99638 6.20512 6.28529 6.71679 7.30992 7.50354 8.90056 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.065204 B = 0.004343 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.317502 B = 6445.277861 C = 6580.499148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.097 4.097 5 C -0.089 4.089 6 H 0.084 0.916 7 C -0.116 4.116 8 C 0.057 3.943 9 N -0.532 5.532 10 C 0.041 3.959 11 C 0.235 3.765 12 H 0.019 0.981 13 O -0.567 6.567 14 C -0.590 4.590 15 H 0.058 0.942 16 C 0.027 3.973 17 N -0.898 5.898 18 Si 0.962 3.038 19 H -0.284 1.284 20 H -0.269 1.269 21 H -0.267 1.267 22 C 0.036 3.964 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.349 0.651 39 H 0.262 0.738 40 H 0.036 0.964 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 16.219 -3.135 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.134 4.134 5 C -0.108 4.108 6 H 0.102 0.898 7 C -0.154 4.154 8 C -0.070 4.070 9 N -0.257 5.257 10 C -0.088 4.088 11 C 0.178 3.822 12 H 0.037 0.963 13 O -0.370 6.370 14 C -0.628 4.628 15 H 0.076 0.924 16 C -0.176 4.176 17 N -0.535 5.535 18 Si 0.786 3.214 19 H -0.209 1.209 20 H -0.194 1.194 21 H -0.192 1.192 22 C -0.092 4.092 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.226 16.483 -3.274 18.710 hybrid contribution -1.030 -1.626 0.722 2.056 sum -9.256 14.857 -2.552 17.689 Atomic orbital electron populations 1.21872 0.94848 1.01726 1.01929 1.21111 0.96236 0.96262 0.97913 1.21822 1.00818 0.95605 1.02020 1.21649 1.00541 0.92927 0.98321 1.22023 0.99971 0.95437 0.93327 0.89815 1.22655 0.99992 0.94920 0.97815 1.23127 0.99861 0.95788 0.88251 1.64740 1.47968 1.09398 1.03570 1.22788 0.97937 0.91105 0.96961 1.19116 0.92591 0.90073 0.80466 0.96290 1.86624 1.31328 1.88507 1.30582 1.21983 1.28946 0.98755 1.13134 0.92376 1.25901 0.93761 1.01981 0.95947 1.70213 1.27584 1.28459 1.27230 0.85588 0.78459 0.78351 0.79014 1.20929 1.19382 1.19161 1.23048 0.93330 0.94515 0.98324 0.92496 0.92302 0.92821 0.91570 0.93045 0.92165 0.92464 0.91476 0.92585 0.90217 0.91442 0.91803 0.94642 0.95562 0.91747 0.80613 0.92956 0.94543 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.98 71.98 0.65 -1.59 16 2 C -0.10 -1.65 2.85 -10.79 -0.03 -1.68 16 3 C -0.15 -2.18 9.19 71.98 0.66 -1.52 16 4 C -0.10 -1.95 3.83 30.60 0.12 -1.83 16 5 C -0.09 -2.13 2.88 -9.92 -0.03 -2.16 16 6 H 0.08 1.83 6.34 -2.39 -0.02 1.82 16 7 C -0.12 -3.16 5.80 31.80 0.18 -2.97 16 8 C 0.06 2.08 4.65 86.65 0.40 2.48 16 9 N -0.53 -20.26 5.40 -883.04 -4.76 -25.02 16 10 C 0.04 1.75 4.82 86.30 0.42 2.17 16 11 C 0.24 12.39 2.91 29.85 0.09 12.48 16 12 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 13 O -0.57 -29.16 8.99 -148.98 -1.34 -30.50 16 14 C -0.59 -33.03 8.76 25.60 0.22 -32.80 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.03 1.51 5.40 84.66 0.46 1.97 16 17 N -0.90 -54.36 12.84 21.45 0.28 -54.08 16 18 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.04 1.06 6.35 86.44 0.55 1.61 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.86 6.46 -2.39 -0.02 0.84 16 26 H 0.07 1.21 7.44 -2.39 -0.02 1.19 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.26 7.98 -2.39 -0.02 1.24 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.86 7.75 -2.39 -0.02 1.85 16 34 H 0.06 2.75 6.83 -2.39 -0.02 2.74 16 35 H 0.04 1.30 6.81 -2.38 -0.02 1.28 16 36 H 0.03 1.10 7.81 -2.39 -0.02 1.08 16 37 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.35 16.20 8.33 -74.06 -0.62 15.58 16 39 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 40 H 0.04 1.07 7.57 -2.38 -0.02 1.06 16 41 H 0.08 2.16 7.69 -2.39 -0.02 2.14 16 Total: -1.00 -62.94 314.89 0.25 -62.69 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.36 Total: 25.02 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 3.69 Total: -23.84 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -4.49 Total: -79.11 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.34 Total: -30.50 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -62.94 0.25 -62.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.195 kcal (2) G-P(sol) polarization free energy of solvation -62.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds