Wall clock time and date at job start Sun Mar 29 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47064 * 2 1 4 4 C 1.52991 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.50535 * 305.00147 * 4 3 2 6 6 C 1.53116 * 109.50686 * 65.07973 * 4 3 2 7 7 C 1.53120 * 109.16606 * 177.59924 * 6 4 3 8 8 C 1.53041 * 109.27282 * 302.34223 * 7 6 4 9 9 N 1.46849 * 109.52195 * 59.18295 * 8 7 6 10 10 C 1.46898 * 110.99765 * 174.16105 * 9 8 7 11 11 C 1.52999 * 109.47110 * 294.02567 * 10 9 8 12 12 H 1.09003 * 109.47013 * 59.73896 * 11 10 9 13 13 O 1.42895 * 109.47470 * 299.73985 * 11 10 9 14 14 C 1.50698 * 109.47503 * 179.73696 * 11 10 9 15 15 H 1.08003 * 119.99596 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00489 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99443 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00197 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46946 * 60.00458 * 18 16 14 20 20 H 1.48497 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47164 * 300.00255 * 18 16 14 22 22 C 1.46851 * 111.23174 * 298.27185 * 9 8 7 23 23 H 1.08995 * 109.46787 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46943 * 59.99952 * 1 2 3 25 25 H 1.08999 * 109.46655 * 299.99945 * 1 2 3 26 26 H 1.08998 * 109.46943 * 120.00048 * 2 1 3 27 27 H 1.08997 * 109.46890 * 240.00534 * 2 1 3 28 28 H 1.09008 * 109.47079 * 300.00370 * 3 2 1 29 29 H 1.08999 * 109.46763 * 59.99727 * 3 2 1 30 30 H 1.09008 * 109.52120 * 297.50136 * 6 4 3 31 31 H 1.09007 * 109.52384 * 57.68698 * 6 4 3 32 32 H 1.08997 * 109.50601 * 62.28219 * 7 6 4 33 33 H 1.08997 * 109.50438 * 182.40638 * 7 6 4 34 34 H 1.08996 * 109.46320 * 179.19540 * 8 7 6 35 35 H 1.09002 * 109.46682 * 299.17535 * 8 7 6 36 36 H 1.09000 * 109.47685 * 54.03233 * 10 9 8 37 37 H 1.09003 * 109.47055 * 174.02931 * 10 9 8 38 38 H 0.96706 * 114.00165 * 300.00047 * 13 11 10 39 39 H 0.97001 * 119.99335 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.42821 * 301.69152 * 22 9 8 41 41 H 1.08992 * 109.49968 * 181.71953 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9343 0.8531 0.8408 6 6 4.0807 0.8346 -1.3098 7 6 5.6107 0.8933 -1.3281 8 6 6.0624 2.3466 -1.1669 9 7 5.5493 2.8823 0.1004 10 6 6.0773 4.2293 0.3548 11 6 7.5891 4.1509 0.5765 12 1 8.0650 3.7313 -0.3099 13 8 7.8627 3.3168 1.7040 14 6 8.1319 5.5335 0.8310 15 1 7.4651 6.3831 0.8348 16 6 9.4796 5.7140 1.0591 17 7 10.2916 4.6794 1.0540 18 14 10.1524 7.4279 1.3739 19 1 9.5045 7.9999 2.5816 20 1 11.6199 7.3520 1.5880 21 1 9.8677 8.2944 0.2021 22 6 4.0810 2.8798 0.1232 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.7551 -0.2033 -1.3809 31 1 3.6843 1.4002 -2.1532 32 1 6.0076 0.2956 -0.5076 33 1 5.9786 0.5009 -2.2761 34 1 7.1515 2.3903 -1.1652 35 1 5.6764 2.9410 -1.9951 36 1 5.8684 4.8694 -0.5023 37 1 5.6009 4.6445 1.2430 38 1 7.4691 3.6302 2.5298 39 1 11.2397 4.8063 1.2149 40 1 3.7044 3.4722 -0.7108 41 1 3.7309 3.3101 1.0614 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929827086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:32 Heat of formation + Delta-G solvation = -78.488405 kcal Electronic energy + Delta-G solvation = -18045.647064 eV Core-core repulsion = 15345.136726 eV Total energy + Delta-G solvation = -2700.510338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.00493 -36.19369 -34.74077 -32.38868 -32.00312 -30.85881 -28.19603 -26.08944 -25.13275 -22.94278 -22.16828 -21.06532 -19.74195 -19.37934 -16.97047 -15.35608 -15.21436 -14.76320 -14.58504 -14.29752 -14.23780 -13.73233 -13.49081 -13.35192 -12.99460 -12.64851 -12.38251 -12.23187 -11.83600 -11.41734 -11.12993 -11.03913 -10.88290 -10.87008 -10.75482 -10.65673 -10.63813 -10.33219 -10.13375 -9.94044 -9.79043 -8.90101 -8.52039 -8.03602 -7.53370 -5.96703 -4.15019 3.30751 3.35995 3.37644 4.33397 4.49685 4.79634 4.89184 4.97838 5.11170 5.21401 5.28747 5.31231 5.49877 5.60309 5.65761 5.73327 5.80751 5.82842 5.88571 5.93694 5.97895 6.04939 6.09295 6.18712 6.21342 6.23207 6.27665 6.45544 6.46890 6.56576 6.61763 6.73538 6.87818 7.65303 7.74078 7.83728 7.95131 8.25384 8.88972 9.50814 9.67664 11.07376 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050411 B = 0.004564 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.303324 B = 6134.053024 C = 6366.322775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.084 4.084 5 H 0.078 0.922 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.056 3.944 9 N -0.526 5.526 10 C 0.031 3.969 11 C 0.238 3.762 12 H 0.054 0.946 13 O -0.554 6.554 14 C -0.575 4.575 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.061 3.939 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.342 0.658 39 H 0.260 0.740 40 H 0.021 0.979 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -7.438 -3.422 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.103 4.103 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.072 4.072 9 N -0.250 5.250 10 C -0.096 4.096 11 C 0.179 3.821 12 H 0.072 0.928 13 O -0.355 6.355 14 C -0.614 4.614 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.716 3.284 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.068 4.068 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.185 0.815 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.583 -8.157 -3.499 17.072 hybrid contribution -0.202 2.004 -0.148 2.020 sum -14.785 -6.153 -3.647 16.424 Atomic orbital electron populations 1.21783 0.96295 1.01265 1.01626 1.21562 0.95327 0.97214 1.02119 1.21624 0.95262 0.96536 1.01730 1.21197 0.93823 0.96710 0.98541 0.90385 1.21655 0.96081 1.00192 0.97112 1.21580 0.95157 0.97175 1.01465 1.22076 1.01211 0.94295 0.89598 1.61894 1.05724 1.24519 1.32910 1.23059 1.00880 0.86594 0.99076 1.19308 0.85827 0.89743 0.87175 0.92833 1.86556 1.77986 1.52989 1.17985 1.21643 0.93391 0.93670 1.52661 0.92858 1.25022 0.97004 0.96429 0.94175 1.70077 1.03782 1.29239 1.46338 0.86741 0.77888 0.84917 0.78826 1.20146 1.21197 1.20250 1.22093 0.89169 0.95555 0.99943 0.93044 0.92967 0.92871 0.92027 0.91894 0.92370 0.92076 0.92198 0.92805 0.91068 0.92203 0.89819 0.96131 0.95815 0.92006 0.81522 0.92973 0.96062 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.16 5.69 -26.73 -0.15 -1.32 16 3 C -0.11 -1.20 4.69 -26.73 -0.13 -1.33 16 4 C -0.08 -1.09 2.35 -90.54 -0.21 -1.30 16 5 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.11 -1.42 4.98 -26.61 -0.13 -1.55 16 7 C -0.12 -1.70 6.09 -26.65 -0.16 -1.86 16 8 C 0.06 1.00 5.29 -3.83 -0.02 0.98 16 9 N -0.53 -9.89 4.53 -234.66 -1.06 -10.96 16 10 C 0.03 0.67 4.56 -3.83 -0.02 0.65 16 11 C 0.24 6.13 2.71 -27.88 -0.08 6.05 16 12 H 0.05 1.52 6.42 -51.93 -0.33 1.18 16 13 O -0.55 -14.72 12.60 -35.23 -0.44 -15.17 16 14 C -0.58 -16.02 8.76 -34.44 -0.30 -16.32 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 17 N -0.86 -25.70 12.84 55.43 0.71 -24.99 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.06 0.94 4.75 -3.83 -0.02 0.92 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.66 6.70 -51.92 -0.35 0.32 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.70 6.21 -51.93 -0.32 1.38 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 38 H 0.34 8.21 9.04 45.56 0.41 8.62 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -29.98 318.88 -8.76 -38.74 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.80 Total: 5.01 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.95 Total: -13.78 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.35 Total: -35.94 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.44 Total: -15.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.98 -8.76 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929827086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.749 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds