Wall clock time and date at job start Sun Mar 29 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47064 * 2 1 4 4 C 1.52991 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.50535 * 305.00147 * 4 3 2 6 6 C 1.53116 * 109.50686 * 65.07973 * 4 3 2 7 7 C 1.53120 * 109.16606 * 177.59924 * 6 4 3 8 8 C 1.53041 * 109.27282 * 302.34223 * 7 6 4 9 9 N 1.46849 * 109.52195 * 59.18295 * 8 7 6 10 10 C 1.46898 * 110.99765 * 174.16105 * 9 8 7 11 11 C 1.52999 * 109.47110 * 294.02567 * 10 9 8 12 12 H 1.09003 * 109.47013 * 59.73896 * 11 10 9 13 13 O 1.42895 * 109.47470 * 299.73985 * 11 10 9 14 14 C 1.50698 * 109.47503 * 179.73696 * 11 10 9 15 15 H 1.08003 * 119.99596 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00489 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99443 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00197 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46946 * 60.00458 * 18 16 14 20 20 H 1.48497 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47164 * 300.00255 * 18 16 14 22 22 C 1.46851 * 111.23174 * 298.27185 * 9 8 7 23 23 H 1.08995 * 109.46787 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46943 * 59.99952 * 1 2 3 25 25 H 1.08999 * 109.46655 * 299.99945 * 1 2 3 26 26 H 1.08998 * 109.46943 * 120.00048 * 2 1 3 27 27 H 1.08997 * 109.46890 * 240.00534 * 2 1 3 28 28 H 1.09008 * 109.47079 * 300.00370 * 3 2 1 29 29 H 1.08999 * 109.46763 * 59.99727 * 3 2 1 30 30 H 1.09008 * 109.52120 * 297.50136 * 6 4 3 31 31 H 1.09007 * 109.52384 * 57.68698 * 6 4 3 32 32 H 1.08997 * 109.50601 * 62.28219 * 7 6 4 33 33 H 1.08997 * 109.50438 * 182.40638 * 7 6 4 34 34 H 1.08996 * 109.46320 * 179.19540 * 8 7 6 35 35 H 1.09002 * 109.46682 * 299.17535 * 8 7 6 36 36 H 1.09000 * 109.47685 * 54.03233 * 10 9 8 37 37 H 1.09003 * 109.47055 * 174.02931 * 10 9 8 38 38 H 0.96706 * 114.00165 * 300.00047 * 13 11 10 39 39 H 0.97001 * 119.99335 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.42821 * 301.69152 * 22 9 8 41 41 H 1.08992 * 109.49968 * 181.71953 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9343 0.8531 0.8408 6 6 4.0807 0.8346 -1.3098 7 6 5.6107 0.8933 -1.3281 8 6 6.0624 2.3466 -1.1669 9 7 5.5493 2.8823 0.1004 10 6 6.0773 4.2293 0.3548 11 6 7.5891 4.1509 0.5765 12 1 8.0650 3.7313 -0.3099 13 8 7.8627 3.3168 1.7040 14 6 8.1319 5.5335 0.8310 15 1 7.4651 6.3831 0.8348 16 6 9.4796 5.7140 1.0591 17 7 10.2916 4.6794 1.0540 18 14 10.1524 7.4279 1.3739 19 1 9.5045 7.9999 2.5816 20 1 11.6199 7.3520 1.5880 21 1 9.8677 8.2944 0.2021 22 6 4.0810 2.8798 0.1232 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.7551 -0.2033 -1.3809 31 1 3.6843 1.4002 -2.1532 32 1 6.0076 0.2956 -0.5076 33 1 5.9786 0.5009 -2.2761 34 1 7.1515 2.3903 -1.1652 35 1 5.6764 2.9410 -1.9951 36 1 5.8684 4.8694 -0.5023 37 1 5.6009 4.6445 1.2430 38 1 7.4691 3.6302 2.5298 39 1 11.2397 4.8063 1.2149 40 1 3.7044 3.4722 -0.7108 41 1 3.7309 3.3101 1.0614 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929827086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:32 Heat of formation + Delta-G solvation = -98.727536 kcal Electronic energy + Delta-G solvation = -18046.524698 eV Core-core repulsion = 15345.136726 eV Total energy + Delta-G solvation = -2701.387973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30789 -37.84477 -36.09359 -34.23202 -33.63411 -31.94145 -30.05574 -27.12593 -26.89252 -24.43063 -23.37381 -22.28228 -21.20737 -20.56749 -19.06159 -16.72501 -16.67648 -16.41490 -16.10206 -16.03751 -15.46599 -15.15638 -14.83876 -14.47830 -14.37602 -14.11341 -13.67037 -13.39220 -13.15227 -12.83385 -12.77829 -12.74295 -12.42452 -12.21757 -12.05564 -12.00824 -11.87828 -11.53224 -11.42705 -11.27486 -10.97069 -10.83438 -10.66615 -10.06815 -9.07347 -8.13158 -6.39775 1.40070 1.42164 1.50385 2.38258 3.04551 3.12956 3.80424 3.89716 3.95670 4.13684 4.27198 4.31583 4.32984 4.39806 4.47698 4.57843 4.61510 4.66072 4.69710 4.79547 4.89661 4.97244 4.98057 5.01293 5.05462 5.09988 5.16094 5.23085 5.29246 5.36662 5.45007 5.54989 5.60229 5.61920 5.75820 6.03282 6.24917 6.37970 6.73884 7.34471 7.62445 8.91168 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050411 B = 0.004564 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.303324 B = 6134.053024 C = 6366.322775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.106 4.106 4 C -0.078 4.078 5 H 0.066 0.934 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.056 3.944 9 N -0.539 5.539 10 C 0.048 3.952 11 C 0.238 3.762 12 H 0.019 0.981 13 O -0.569 6.569 14 C -0.592 4.592 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.899 5.899 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.060 3.940 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.068 0.932 38 H 0.351 0.649 39 H 0.261 0.739 40 H 0.026 0.974 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.064 -7.249 -3.609 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.072 4.072 9 N -0.263 5.263 10 C -0.080 4.080 11 C 0.181 3.819 12 H 0.037 0.963 13 O -0.372 6.372 14 C -0.630 4.630 15 H 0.076 0.924 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.786 3.214 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.068 4.068 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.086 0.914 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.399 -7.968 -3.687 18.601 hybrid contribution 0.351 1.908 -0.096 1.942 sum -16.048 -6.061 -3.782 17.566 Atomic orbital electron populations 1.21768 0.95311 1.01914 1.01848 1.21544 0.96173 0.96125 1.02203 1.21561 0.93106 0.97669 1.02098 1.21155 0.95550 0.94594 0.98411 0.91549 1.21634 0.94039 1.01698 0.97038 1.21552 0.97021 0.94403 1.01874 1.22058 0.99086 0.96677 0.89392 1.61842 1.08066 1.22736 1.33635 1.22671 0.97874 0.88252 0.99184 1.19158 0.88545 0.88524 0.85720 0.96288 1.86500 1.78630 1.53369 1.18738 1.22044 0.93950 0.94674 1.52325 0.92360 1.25920 0.97335 1.00674 0.93781 1.70226 1.04059 1.31777 1.47569 0.85586 0.77081 0.79627 0.79107 1.19072 1.20928 1.19374 1.22202 0.86699 0.97626 1.00246 0.92233 0.92610 0.92817 0.92299 0.91486 0.91820 0.91924 0.89966 0.92023 0.92389 0.90436 0.93461 0.95705 0.96165 0.91368 0.80442 0.92972 0.95622 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -1.97 5.69 30.60 0.17 -1.79 16 3 C -0.11 -1.99 4.69 30.59 0.14 -1.84 16 4 C -0.08 -1.89 2.35 -10.74 -0.03 -1.91 16 5 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 6 C -0.11 -2.43 4.98 30.67 0.15 -2.28 16 7 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 8 C 0.06 2.03 5.29 86.33 0.46 2.48 16 9 N -0.54 -20.31 4.53 -896.34 -4.06 -24.37 16 10 C 0.05 2.08 4.56 86.30 0.39 2.48 16 11 C 0.24 12.68 2.71 29.85 0.08 12.76 16 12 H 0.02 1.15 6.42 -2.39 -0.02 1.13 16 13 O -0.57 -31.14 12.60 -148.98 -1.88 -33.02 16 14 C -0.59 -33.36 8.76 25.60 0.22 -33.13 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.03 1.45 5.40 84.65 0.46 1.90 16 17 N -0.90 -54.97 12.84 21.45 0.28 -54.69 16 18 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.06 1.78 4.75 86.33 0.41 2.19 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.02 6.63 -2.39 -0.02 1.01 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.55 6.70 -2.38 -0.02 1.54 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 2.04 6.21 -2.39 -0.01 2.02 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 37 H 0.07 2.82 7.98 -2.39 -0.02 2.80 16 38 H 0.35 17.23 9.04 -74.05 -0.67 16.56 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.07 2.02 8.01 -2.39 -0.02 2.00 16 Total: -1.00 -64.68 318.88 0.04 -64.64 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.31 Total: 24.94 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.37 Total: -23.44 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -3.78 Total: -79.06 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.88 Total: -33.02 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.68 0.04 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929827086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.089 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds