Wall clock time and date at job start Sun Mar 29 2020 22:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.53009 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.53514 * 55.09823 * 4 3 2 6 6 C 1.53113 * 109.50081 * 294.99600 * 4 3 2 7 7 C 1.53119 * 109.15961 * 182.40292 * 6 4 3 8 8 C 1.53037 * 109.30998 * 57.63913 * 7 6 4 9 9 N 1.46855 * 109.52245 * 300.88405 * 8 7 6 10 10 C 1.46892 * 110.99478 * 185.79994 * 9 8 7 11 11 C 1.53002 * 109.46946 * 159.96210 * 10 9 8 12 12 H 1.09007 * 109.46986 * 57.14256 * 11 10 9 13 13 O 1.42902 * 109.47275 * 297.14000 * 11 10 9 14 14 C 1.50698 * 109.47229 * 177.13883 * 11 10 9 15 15 H 1.08003 * 120.00191 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00187 * 179.97438 * 14 11 10 17 17 N 1.31506 * 119.99948 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99822 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47581 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46969 * 120.00391 * 18 16 14 21 21 H 1.48500 * 109.47004 * 240.00147 * 18 16 14 22 22 C 1.46840 * 111.23235 * 61.67713 * 9 8 7 23 23 H 1.08999 * 109.47083 * 59.99933 * 1 2 3 24 24 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46526 * 300.00225 * 1 2 3 26 26 H 1.09005 * 109.46932 * 240.00126 * 2 1 3 27 27 H 1.08999 * 109.47083 * 120.00067 * 2 1 3 28 28 H 1.08991 * 109.47249 * 60.00043 * 3 2 1 29 29 H 1.08999 * 109.47195 * 299.99999 * 3 2 1 30 30 H 1.09005 * 109.52317 * 62.50591 * 6 4 3 31 31 H 1.08994 * 109.53216 * 302.31585 * 6 4 3 32 32 H 1.09000 * 109.50377 * 177.60068 * 7 6 4 33 33 H 1.08997 * 109.50615 * 297.67710 * 7 6 4 34 34 H 1.09001 * 109.46299 * 60.85305 * 8 7 6 35 35 H 1.08997 * 109.46624 * 180.82109 * 8 7 6 36 36 H 1.09002 * 109.47084 * 279.95972 * 10 9 8 37 37 H 1.09006 * 109.47432 * 39.96616 * 10 9 8 38 38 H 0.96696 * 113.99850 * 300.00315 * 13 11 10 39 39 H 0.96997 * 120.00318 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46206 * 178.26748 * 22 9 8 41 41 H 1.09003 * 109.46618 * 58.29621 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9342 0.8548 -0.8433 6 6 4.0818 0.8323 1.3072 7 6 5.6117 0.8909 1.3243 8 6 6.0644 2.3441 1.1646 9 7 5.5493 2.8823 -0.1009 10 6 6.0772 4.2296 -0.3535 11 6 5.9495 4.5564 -1.8428 12 1 4.9064 4.4672 -2.1462 13 8 6.7460 3.6436 -2.6008 14 6 6.4260 5.9644 -2.0907 15 1 6.7845 6.5659 -1.2684 16 6 6.4053 6.4845 -3.3675 17 7 5.9693 5.7520 -4.3689 18 14 6.9966 8.2296 -3.6749 19 1 7.4340 8.8372 -2.3925 20 1 8.1375 8.2054 -4.6252 21 1 5.8890 9.0331 -4.2515 22 6 4.0810 2.8800 -0.1214 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.7563 -0.2056 1.3768 31 1 3.6862 1.3964 2.1517 32 1 5.9804 0.4969 2.2713 33 1 6.0080 0.2940 0.5029 34 1 5.6798 2.9375 1.9941 35 1 7.1535 2.3871 1.1618 36 1 5.5104 4.9568 0.2279 37 1 7.1267 4.2693 -0.0615 38 1 7.6877 3.6686 -2.3828 39 1 5.9544 6.1179 -5.2671 40 1 3.7302 3.3125 -1.0584 41 1 3.7051 3.4704 0.7142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929827087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:34 Heat of formation + Delta-G solvation = -79.040739 kcal Electronic energy + Delta-G solvation = -18134.887634 eV Core-core repulsion = 15434.353345 eV Total energy + Delta-G solvation = -2700.534289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98499 -36.08206 -34.79501 -32.38356 -32.00141 -30.83975 -28.12087 -26.11740 -25.12114 -23.00912 -22.09376 -20.77446 -19.94901 -19.38123 -16.93842 -15.31404 -15.19394 -14.78001 -14.59984 -14.31676 -14.15912 -13.78633 -13.41714 -13.20105 -12.91289 -12.67726 -12.49350 -12.09695 -11.80963 -11.32275 -11.18321 -11.09428 -10.91682 -10.79900 -10.76126 -10.65093 -10.52208 -10.35207 -10.07461 -9.89866 -9.76740 -8.94407 -8.52898 -8.06379 -7.49350 -5.96201 -4.14523 3.28650 3.36800 3.40051 4.34123 4.50838 4.87539 4.96172 5.02861 5.16744 5.22220 5.28345 5.31371 5.52434 5.66126 5.70491 5.77489 5.83289 5.87633 5.91344 5.95575 6.02427 6.05172 6.15225 6.17275 6.23120 6.25654 6.33277 6.40882 6.45715 6.57699 6.65036 6.74975 6.88306 7.65143 7.72568 7.84096 7.97540 8.26328 8.90232 9.51669 9.68776 11.07909 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.005386 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.647753 B = 5197.725656 C = 5790.739286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.084 4.084 5 H 0.079 0.921 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.055 3.945 9 N -0.527 5.527 10 C 0.031 3.969 11 C 0.240 3.760 12 H 0.053 0.947 13 O -0.554 6.554 14 C -0.574 4.574 15 H 0.054 0.946 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.064 3.936 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.060 0.940 38 H 0.340 0.660 39 H 0.259 0.741 40 H 0.079 0.921 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 -9.777 10.798 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.103 4.103 5 H 0.098 0.902 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.073 4.073 9 N -0.251 5.251 10 C -0.096 4.096 11 C 0.182 3.818 12 H 0.071 0.929 13 O -0.355 6.355 14 C -0.613 4.613 15 H 0.072 0.928 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.064 4.064 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.183 0.817 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.240 -10.230 9.966 15.586 hybrid contribution 0.559 1.829 0.759 2.058 sum -5.681 -8.401 10.725 14.761 Atomic orbital electron populations 1.21785 0.96301 1.01178 1.01715 1.21556 0.95353 0.97255 1.01964 1.21621 0.95166 0.96489 1.01964 1.21201 0.94045 0.96840 0.98200 0.90250 1.21647 0.95656 1.00295 0.97437 1.21572 0.95758 0.96831 1.01188 1.22073 0.99553 0.94910 0.90774 1.61902 1.07165 1.24628 1.31397 1.23086 0.98352 0.86239 1.01924 1.19276 0.92613 0.87076 0.82868 0.92935 1.86569 1.19681 1.63349 1.65911 1.21726 1.46193 0.99514 0.93839 0.92781 1.25019 0.94254 0.97092 0.96232 1.70094 1.44038 1.35676 0.99599 0.86646 0.78583 0.85031 0.78285 1.19778 1.20866 1.20918 1.22089 0.88081 0.95388 1.00831 0.92734 0.93119 0.93011 0.91992 0.92082 0.92411 0.91730 0.92161 0.92806 0.92379 0.91154 0.96135 0.91379 0.95529 0.92177 0.81677 0.93095 0.90258 0.96066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.30 5.69 -26.73 -0.15 -1.45 16 3 C -0.11 -1.40 4.69 -26.73 -0.13 -1.53 16 4 C -0.08 -1.20 2.35 -90.54 -0.21 -1.41 16 5 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 6 C -0.11 -1.41 4.98 -26.61 -0.13 -1.54 16 7 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 8 C 0.06 0.86 5.43 -3.83 -0.02 0.84 16 9 N -0.53 -9.90 4.50 -234.67 -1.06 -10.95 16 10 C 0.03 0.67 4.59 -3.83 -0.02 0.65 16 11 C 0.24 6.21 2.90 -27.88 -0.08 6.13 16 12 H 0.05 1.50 6.76 -51.93 -0.35 1.15 16 13 O -0.55 -14.80 12.65 -35.23 -0.45 -15.24 16 14 C -0.57 -16.01 8.76 -34.44 -0.30 -16.31 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 16 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 17 N -0.86 -25.76 12.84 55.43 0.71 -25.05 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.06 1.12 4.57 -3.84 -0.02 1.10 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.60 6.63 -51.93 -0.34 0.26 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.66 6.70 -51.93 -0.35 0.32 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 36 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 37 H 0.06 1.24 7.79 -51.93 -0.40 0.84 16 38 H 0.34 8.17 9.04 45.56 0.41 8.58 16 39 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 40 H 0.08 1.56 6.68 -51.93 -0.35 1.22 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -30.24 319.47 -8.77 -39.01 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.82 Total: 5.17 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.95 Total: -14.08 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.34 Total: -36.00 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.45 Total: -15.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.24 -8.77 -39.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929827087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.030 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds