Wall clock time and date at job start Sun Mar 29 2020 22:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.53009 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.53514 * 55.09823 * 4 3 2 6 6 C 1.53113 * 109.50081 * 294.99600 * 4 3 2 7 7 C 1.53119 * 109.15961 * 182.40292 * 6 4 3 8 8 C 1.53037 * 109.30998 * 57.63913 * 7 6 4 9 9 N 1.46855 * 109.52245 * 300.88405 * 8 7 6 10 10 C 1.46892 * 110.99478 * 185.79994 * 9 8 7 11 11 C 1.53002 * 109.46946 * 159.96210 * 10 9 8 12 12 H 1.09007 * 109.46986 * 57.14256 * 11 10 9 13 13 O 1.42902 * 109.47275 * 297.14000 * 11 10 9 14 14 C 1.50698 * 109.47229 * 177.13883 * 11 10 9 15 15 H 1.08003 * 120.00191 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00187 * 179.97438 * 14 11 10 17 17 N 1.31506 * 119.99948 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99822 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47581 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46969 * 120.00391 * 18 16 14 21 21 H 1.48500 * 109.47004 * 240.00147 * 18 16 14 22 22 C 1.46840 * 111.23235 * 61.67713 * 9 8 7 23 23 H 1.08999 * 109.47083 * 59.99933 * 1 2 3 24 24 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46526 * 300.00225 * 1 2 3 26 26 H 1.09005 * 109.46932 * 240.00126 * 2 1 3 27 27 H 1.08999 * 109.47083 * 120.00067 * 2 1 3 28 28 H 1.08991 * 109.47249 * 60.00043 * 3 2 1 29 29 H 1.08999 * 109.47195 * 299.99999 * 3 2 1 30 30 H 1.09005 * 109.52317 * 62.50591 * 6 4 3 31 31 H 1.08994 * 109.53216 * 302.31585 * 6 4 3 32 32 H 1.09000 * 109.50377 * 177.60068 * 7 6 4 33 33 H 1.08997 * 109.50615 * 297.67710 * 7 6 4 34 34 H 1.09001 * 109.46299 * 60.85305 * 8 7 6 35 35 H 1.08997 * 109.46624 * 180.82109 * 8 7 6 36 36 H 1.09002 * 109.47084 * 279.95972 * 10 9 8 37 37 H 1.09006 * 109.47432 * 39.96616 * 10 9 8 38 38 H 0.96696 * 113.99850 * 300.00315 * 13 11 10 39 39 H 0.96997 * 120.00318 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46206 * 178.26748 * 22 9 8 41 41 H 1.09003 * 109.46618 * 58.29621 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9342 0.8548 -0.8433 6 6 4.0818 0.8323 1.3072 7 6 5.6117 0.8909 1.3243 8 6 6.0644 2.3441 1.1646 9 7 5.5493 2.8823 -0.1009 10 6 6.0772 4.2296 -0.3535 11 6 5.9495 4.5564 -1.8428 12 1 4.9064 4.4672 -2.1462 13 8 6.7460 3.6436 -2.6008 14 6 6.4260 5.9644 -2.0907 15 1 6.7845 6.5659 -1.2684 16 6 6.4053 6.4845 -3.3675 17 7 5.9693 5.7520 -4.3689 18 14 6.9966 8.2296 -3.6749 19 1 7.4340 8.8372 -2.3925 20 1 8.1375 8.2054 -4.6252 21 1 5.8890 9.0331 -4.2515 22 6 4.0810 2.8800 -0.1214 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.7563 -0.2056 1.3768 31 1 3.6862 1.3964 2.1517 32 1 5.9804 0.4969 2.2713 33 1 6.0080 0.2940 0.5029 34 1 5.6798 2.9375 1.9941 35 1 7.1535 2.3871 1.1618 36 1 5.5104 4.9568 0.2279 37 1 7.1267 4.2693 -0.0615 38 1 7.6877 3.6686 -2.3828 39 1 5.9544 6.1179 -5.2671 40 1 3.7302 3.3125 -1.0584 41 1 3.7051 3.4704 0.7142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929827087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:34 Heat of formation + Delta-G solvation = -99.590246 kcal Electronic energy + Delta-G solvation = -18135.778728 eV Core-core repulsion = 15434.353345 eV Total energy + Delta-G solvation = -2701.425383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29787 -37.80097 -36.16820 -34.23736 -33.64144 -31.93282 -30.01519 -27.20845 -26.87494 -24.55030 -23.15711 -22.22843 -21.41196 -20.57475 -19.03887 -16.71240 -16.66238 -16.48909 -16.16883 -16.00236 -15.38560 -15.13620 -14.90699 -14.53159 -14.25295 -14.10667 -13.67851 -13.37621 -13.17077 -12.90979 -12.82800 -12.72769 -12.43924 -12.24914 -12.07672 -11.92970 -11.88329 -11.53445 -11.48313 -11.17203 -11.01494 -10.87000 -10.69940 -10.09532 -9.04172 -8.13357 -6.40164 1.39199 1.39988 1.52587 2.37945 3.04812 3.12819 3.79888 3.89424 3.94111 4.14996 4.24847 4.29970 4.33887 4.38619 4.44962 4.56307 4.62817 4.67405 4.68927 4.77200 4.90670 4.96090 4.98441 5.00772 5.05583 5.07456 5.15925 5.22842 5.27029 5.35518 5.44333 5.53407 5.59162 5.61223 5.75514 6.03254 6.26010 6.39039 6.74504 7.34515 7.63206 8.91472 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.005386 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.647753 B = 5197.725656 C = 5790.739286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.110 4.110 4 C -0.078 4.078 5 H 0.059 0.941 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.052 3.948 9 N -0.542 5.542 10 C 0.049 3.951 11 C 0.241 3.759 12 H 0.014 0.986 13 O -0.570 6.570 14 C -0.590 4.590 15 H 0.058 0.942 16 C 0.026 3.974 17 N -0.901 5.901 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.065 3.935 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.351 0.649 39 H 0.261 0.739 40 H 0.042 0.958 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 -10.193 12.685 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.148 4.148 4 C -0.097 4.097 5 H 0.078 0.922 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.075 4.075 9 N -0.266 5.266 10 C -0.079 4.079 11 C 0.183 3.817 12 H 0.032 0.968 13 O -0.373 6.373 14 C -0.628 4.628 15 H 0.077 0.923 16 C -0.177 4.177 17 N -0.538 5.538 18 Si 0.786 3.214 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.063 4.063 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.073 -10.655 11.876 17.072 hybrid contribution 0.502 1.929 0.166 2.000 sum -5.571 -8.726 12.042 15.881 Atomic orbital electron populations 1.21775 0.95319 1.02054 1.01732 1.21526 0.96198 0.95665 1.02325 1.21587 0.93672 0.97975 1.01614 1.21142 0.95341 0.94260 0.98933 0.92231 1.21629 0.95150 1.01544 0.96107 1.21574 0.96198 0.94770 1.02353 1.22199 0.99761 0.96469 0.89085 1.61829 1.07930 1.22892 1.33991 1.22681 0.98958 0.87893 0.98405 1.19113 0.90398 0.86569 0.85615 0.96814 1.86510 1.20603 1.63491 1.66738 1.22105 1.45945 1.00539 0.94206 0.92328 1.25917 0.94230 1.01583 0.95930 1.70239 1.45445 1.37970 1.00114 0.85483 0.78056 0.79415 0.78442 1.18678 1.20312 1.20455 1.22075 0.87520 0.97629 0.99040 0.93404 0.91816 0.92370 0.92612 0.90691 0.91518 0.93379 0.89889 0.91845 0.89368 0.92177 0.95383 0.91059 0.95918 0.91327 0.80475 0.92981 0.93956 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.85 16 2 C -0.12 -2.31 5.69 30.60 0.17 -2.14 16 3 C -0.11 -2.64 4.69 30.60 0.14 -2.50 16 4 C -0.08 -2.19 2.35 -10.74 -0.03 -2.21 16 5 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 6 C -0.11 -2.38 4.98 30.67 0.15 -2.23 16 7 C -0.11 -2.63 6.09 30.65 0.19 -2.44 16 8 C 0.05 1.54 5.43 86.32 0.47 2.01 16 9 N -0.54 -20.47 4.50 -896.37 -4.03 -24.50 16 10 C 0.05 2.10 4.59 86.31 0.40 2.50 16 11 C 0.24 12.93 2.90 29.85 0.09 13.01 16 12 H 0.01 0.85 6.76 -2.38 -0.02 0.84 16 13 O -0.57 -31.42 12.65 -148.98 -1.88 -33.30 16 14 C -0.59 -33.36 8.76 25.60 0.22 -33.14 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.03 1.47 5.40 84.66 0.46 1.93 16 17 N -0.90 -55.34 12.84 21.45 0.28 -55.07 16 18 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 C 0.07 2.33 4.57 86.33 0.39 2.73 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.07 1.25 6.63 -2.39 -0.02 1.24 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.52 6.70 -2.38 -0.02 1.50 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 2.04 7.93 -2.39 -0.02 2.02 16 36 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 37 H 0.07 2.81 7.79 -2.38 -0.02 2.79 16 38 H 0.35 17.20 9.04 -74.06 -0.67 16.53 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.04 1.79 6.68 -2.39 -0.02 1.77 16 41 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.88 319.47 0.06 -65.82 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.30 Total: 25.31 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.37 Total: -24.33 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.76 Total: -79.57 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.88 Total: -33.30 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.88 0.06 -65.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929827087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.775 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds