Wall clock time and date at job start Sun Mar 29 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.53001 * 109.46880 * 184.90317 * 3 2 1 5 5 H 1.09001 * 109.47020 * 177.25619 * 4 3 2 6 6 N 1.46897 * 109.47246 * 57.25741 * 4 3 2 7 7 C 1.46901 * 111.00412 * 84.93758 * 6 4 3 8 8 C 1.52995 * 109.47302 * 185.26574 * 7 6 4 9 9 H 1.09005 * 109.47423 * 59.99943 * 8 7 6 10 10 O 1.42905 * 109.47028 * 299.99887 * 8 7 6 11 11 C 1.50699 * 109.47137 * 179.97438 * 8 7 6 12 12 H 1.07997 * 120.00356 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99957 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00068 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 119.99883 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47188 * 60.00066 * 15 13 11 17 17 H 1.48504 * 109.47192 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 300.00096 * 15 13 11 19 19 C 1.53001 * 109.46968 * 297.25263 * 4 3 2 20 20 C 1.53779 * 113.61387 * 279.13763 * 19 4 3 21 21 C 1.53962 * 87.01783 * 220.04891 * 20 19 4 22 22 C 1.53781 * 113.61047 * 181.52968 * 19 4 3 23 23 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46712 * 300.00234 * 1 2 3 25 25 H 1.09001 * 109.47235 * 59.99379 * 1 2 3 26 26 H 1.09007 * 109.46884 * 240.00420 * 2 1 3 27 27 H 1.08991 * 109.47138 * 120.00099 * 2 1 3 28 28 H 1.09000 * 109.47066 * 304.89984 * 3 2 1 29 29 H 1.08997 * 109.47159 * 64.90410 * 3 2 1 30 30 H 1.00905 * 110.99752 * 208.89029 * 6 4 3 31 31 H 1.09005 * 109.46929 * 305.26256 * 7 6 4 32 32 H 1.08996 * 109.46743 * 65.26339 * 7 6 4 33 33 H 0.96701 * 114.00019 * 299.99629 * 10 8 7 34 34 H 0.96995 * 120.00485 * 179.97438 * 14 13 11 35 35 H 1.08994 * 112.84532 * 50.33834 * 19 4 3 36 36 H 1.08998 * 113.61401 * 334.56888 * 20 19 4 37 37 H 1.09001 * 113.61390 * 105.47655 * 20 19 4 38 38 H 1.08998 * 113.53698 * 270.81505 * 21 20 19 39 39 H 1.09002 * 113.74023 * 139.94842 * 21 20 19 40 40 H 1.09006 * 113.61410 * 254.52774 * 22 19 4 41 41 H 1.09000 * 113.62032 * 25.43548 * 22 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4442 -0.1233 5 1 3.9244 2.4721 -0.1723 6 7 3.9584 0.7292 -1.3447 7 6 3.9247 1.6215 -2.5112 8 6 4.2112 0.8145 -3.7791 9 1 3.4552 0.0377 -3.8940 10 8 5.5027 0.2112 -3.6780 11 6 4.1760 1.7298 -4.9757 12 1 3.9695 2.7818 -4.8451 13 6 4.4075 1.2242 -6.2374 14 7 4.6584 -0.0569 -6.3966 15 14 4.3646 2.3589 -7.7206 16 1 5.3942 3.4176 -7.5639 17 1 4.6438 1.5759 -8.9512 18 1 3.0224 2.9855 -7.8259 19 6 4.1759 0.7480 1.0945 20 6 4.2697 1.6495 2.3368 21 6 5.6470 1.0122 2.5961 22 6 5.7136 0.7289 1.0861 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.6068 1.9810 -0.8428 29 1 1.7502 1.9303 0.9306 30 1 4.8685 0.3064 -1.2390 31 1 2.9396 2.0817 -2.5883 32 1 4.6806 2.3983 -2.3963 33 1 6.2257 0.8448 -3.5736 34 1 4.8209 -0.4127 -7.2842 35 1 3.7282 -0.2255 1.2941 36 1 4.3178 2.7128 2.1020 37 1 3.5290 1.4169 3.1019 38 1 5.6015 0.1111 3.2078 39 1 6.4003 1.7204 2.9412 40 1 6.1368 -0.2458 0.8430 41 1 6.1573 1.5401 0.5088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930704145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:19 Heat of formation + Delta-G solvation = -56.975158 kcal Electronic energy + Delta-G solvation = -18114.552727 eV Core-core repulsion = 15414.975273 eV Total energy + Delta-G solvation = -2699.577454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40828 -36.47716 -35.13660 -32.93021 -32.05805 -29.41806 -27.30069 -25.67840 -25.21320 -23.80146 -22.13778 -20.59168 -19.86842 -18.88719 -16.86704 -16.08245 -15.48141 -14.67206 -14.56233 -14.37905 -14.11581 -13.82699 -13.48724 -12.90422 -12.78325 -12.43924 -12.36619 -11.87781 -11.75929 -11.68939 -11.16333 -11.11400 -10.90294 -10.82742 -10.77469 -10.58267 -10.35349 -10.20965 -10.06817 -9.96323 -9.77596 -8.96642 -8.53269 -8.12879 -7.62843 -5.96757 -4.15001 3.30607 3.35962 3.37641 4.37740 4.53620 4.66756 4.73266 4.87833 5.11735 5.23354 5.30239 5.39568 5.45888 5.53521 5.66141 5.72539 5.76007 5.86394 5.91241 5.96722 5.99110 6.12119 6.13423 6.19316 6.27249 6.29106 6.35071 6.44752 6.50842 6.63389 6.64491 6.85370 6.97027 7.67446 7.80258 7.93896 8.10512 8.29939 8.88790 9.43066 9.62448 11.07420 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.005658 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.667696 B = 4947.368436 C = 5566.098208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.103 4.103 4 C 0.094 3.906 5 H 0.034 0.966 6 N -0.677 5.677 7 C 0.038 3.962 8 C 0.234 3.766 9 H 0.062 0.938 10 O -0.564 6.564 11 C -0.573 4.573 12 H 0.053 0.947 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.141 4.141 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.342 0.658 31 H 0.062 0.938 32 H 0.013 0.987 33 H 0.339 0.661 34 H 0.260 0.740 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 2.328 15.983 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.142 4.142 4 C -0.016 4.016 5 H 0.052 0.948 6 N -0.309 5.309 7 C -0.092 4.092 8 C 0.177 3.823 9 H 0.080 0.920 10 O -0.366 6.366 11 C -0.612 4.612 12 H 0.071 0.929 13 C -0.126 4.126 14 N -0.494 5.494 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.127 4.127 20 C -0.173 4.173 21 C -0.179 4.179 22 C -0.179 4.179 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.182 0.818 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.750 1.361 15.666 15.963 hybrid contribution 0.986 1.834 -0.722 2.204 sum -1.764 3.196 14.944 15.383 Atomic orbital electron populations 1.21800 0.97143 1.00941 1.01027 1.21435 0.94152 0.96985 1.02794 1.21519 0.94862 0.97355 1.00415 1.21504 0.95295 0.95071 0.89698 0.94836 1.60454 1.35001 1.33685 1.01797 1.22854 0.99613 0.94363 0.92324 1.19385 0.82856 0.92248 0.87857 0.91993 1.86593 1.16721 1.37241 1.96041 1.21619 1.52117 0.95097 0.92358 0.92898 1.25024 0.93994 0.94791 0.98803 1.70070 1.44821 1.11987 1.22523 0.86753 0.78577 0.80877 0.82224 1.20251 1.21194 1.20176 1.22752 0.95374 0.99876 0.94651 1.22951 0.97152 0.99291 0.97870 1.22816 0.97510 1.00667 0.96898 1.22926 0.96596 1.02150 0.96201 0.93303 0.93739 0.92933 0.89786 0.93041 0.92329 0.93003 0.83849 0.91921 0.96892 0.81786 0.92981 0.88567 0.90437 0.91787 0.90447 0.91869 0.91226 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.60 5.46 -26.73 -0.15 -1.75 16 3 C -0.10 -1.44 5.02 -26.73 -0.13 -1.57 16 4 C 0.09 1.37 2.08 -67.71 -0.14 1.23 16 5 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 6 N -0.68 -11.95 5.30 -106.73 -0.57 -12.52 16 7 C 0.04 0.78 5.10 -3.83 -0.02 0.76 16 8 C 0.23 5.98 3.10 -27.89 -0.09 5.89 16 9 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 10 O -0.56 -14.42 12.17 -35.23 -0.43 -14.85 16 11 C -0.57 -15.90 8.76 -34.44 -0.30 -16.20 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 14 N -0.86 -25.68 12.84 55.43 0.71 -24.97 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.11 -1.32 3.02 -89.81 -0.27 -1.59 16 20 C -0.13 -1.41 7.62 -25.82 -0.20 -1.61 16 21 C -0.14 -1.41 8.09 -25.82 -0.21 -1.62 16 22 C -0.14 -1.66 6.58 -25.92 -0.17 -1.83 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.39 7.37 -51.93 -0.38 1.01 16 27 H 0.05 0.66 6.61 -51.93 -0.34 0.31 16 28 H 0.06 0.90 7.44 -51.93 -0.39 0.51 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.34 6.11 6.95 -39.29 -0.27 5.83 16 31 H 0.06 1.32 7.37 -51.93 -0.38 0.93 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.34 7.73 9.04 45.56 0.41 8.14 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 1.21 6.44 -51.93 -0.33 0.87 16 36 H 0.08 0.82 7.99 -51.93 -0.41 0.40 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -29.26 323.76 -8.52 -37.78 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.69 Total: 10.98 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.40 Total: -17.64 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.15 Total: -37.48 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.43 Total: -14.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.26 -8.52 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930704145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.190 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds