Wall clock time and date at job start Sun Mar 29 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.53001 * 109.46880 * 184.90317 * 3 2 1 5 5 H 1.09001 * 109.47020 * 177.25619 * 4 3 2 6 6 N 1.46897 * 109.47246 * 57.25741 * 4 3 2 7 7 C 1.46901 * 111.00412 * 84.93758 * 6 4 3 8 8 C 1.52995 * 109.47302 * 185.26574 * 7 6 4 9 9 H 1.09005 * 109.47423 * 59.99943 * 8 7 6 10 10 O 1.42905 * 109.47028 * 299.99887 * 8 7 6 11 11 C 1.50699 * 109.47137 * 179.97438 * 8 7 6 12 12 H 1.07997 * 120.00356 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99957 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00068 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 119.99883 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47188 * 60.00066 * 15 13 11 17 17 H 1.48504 * 109.47192 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 300.00096 * 15 13 11 19 19 C 1.53001 * 109.46968 * 297.25263 * 4 3 2 20 20 C 1.53779 * 113.61387 * 279.13763 * 19 4 3 21 21 C 1.53962 * 87.01783 * 220.04891 * 20 19 4 22 22 C 1.53781 * 113.61047 * 181.52968 * 19 4 3 23 23 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46712 * 300.00234 * 1 2 3 25 25 H 1.09001 * 109.47235 * 59.99379 * 1 2 3 26 26 H 1.09007 * 109.46884 * 240.00420 * 2 1 3 27 27 H 1.08991 * 109.47138 * 120.00099 * 2 1 3 28 28 H 1.09000 * 109.47066 * 304.89984 * 3 2 1 29 29 H 1.08997 * 109.47159 * 64.90410 * 3 2 1 30 30 H 1.00905 * 110.99752 * 208.89029 * 6 4 3 31 31 H 1.09005 * 109.46929 * 305.26256 * 7 6 4 32 32 H 1.08996 * 109.46743 * 65.26339 * 7 6 4 33 33 H 0.96701 * 114.00019 * 299.99629 * 10 8 7 34 34 H 0.96995 * 120.00485 * 179.97438 * 14 13 11 35 35 H 1.08994 * 112.84532 * 50.33834 * 19 4 3 36 36 H 1.08998 * 113.61401 * 334.56888 * 20 19 4 37 37 H 1.09001 * 113.61390 * 105.47655 * 20 19 4 38 38 H 1.08998 * 113.53698 * 270.81505 * 21 20 19 39 39 H 1.09002 * 113.74023 * 139.94842 * 21 20 19 40 40 H 1.09006 * 113.61410 * 254.52774 * 22 19 4 41 41 H 1.09000 * 113.62032 * 25.43548 * 22 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4442 -0.1233 5 1 3.9244 2.4721 -0.1723 6 7 3.9584 0.7292 -1.3447 7 6 3.9247 1.6215 -2.5112 8 6 4.2112 0.8145 -3.7791 9 1 3.4552 0.0377 -3.8940 10 8 5.5027 0.2112 -3.6780 11 6 4.1760 1.7298 -4.9757 12 1 3.9695 2.7818 -4.8451 13 6 4.4075 1.2242 -6.2374 14 7 4.6584 -0.0569 -6.3966 15 14 4.3646 2.3589 -7.7206 16 1 5.3942 3.4176 -7.5639 17 1 4.6438 1.5759 -8.9512 18 1 3.0224 2.9855 -7.8259 19 6 4.1759 0.7480 1.0945 20 6 4.2697 1.6495 2.3368 21 6 5.6470 1.0122 2.5961 22 6 5.7136 0.7289 1.0861 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.6068 1.9810 -0.8428 29 1 1.7502 1.9303 0.9306 30 1 4.8685 0.3064 -1.2390 31 1 2.9396 2.0817 -2.5883 32 1 4.6806 2.3983 -2.3963 33 1 6.2257 0.8448 -3.5736 34 1 4.8209 -0.4127 -7.2842 35 1 3.7282 -0.2255 1.2941 36 1 4.3178 2.7128 2.1020 37 1 3.5290 1.4169 3.1019 38 1 5.6015 0.1111 3.2078 39 1 6.4003 1.7204 2.9412 40 1 6.1368 -0.2458 0.8430 41 1 6.1573 1.5401 0.5088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930704145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:18 Heat of formation + Delta-G solvation = -76.210782 kcal Electronic energy + Delta-G solvation = -18115.386846 eV Core-core repulsion = 15414.975273 eV Total energy + Delta-G solvation = -2700.411573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45409 -38.17127 -36.53552 -34.41093 -34.14267 -30.90549 -28.97283 -26.85955 -26.14968 -25.49721 -23.26079 -22.37996 -21.04401 -19.91558 -18.97154 -17.39906 -16.65330 -16.48859 -16.27057 -15.83534 -15.46717 -15.18483 -14.95233 -14.39145 -14.22120 -13.73170 -13.31348 -13.16404 -13.09895 -12.95154 -12.80999 -12.73211 -12.60676 -12.44243 -12.13038 -11.99597 -11.57403 -11.49870 -11.13779 -11.07237 -10.97507 -10.84871 -10.69436 -10.12759 -9.10644 -8.13003 -6.39376 1.39980 1.41861 1.50113 2.38609 3.12378 3.30359 3.75391 3.76346 3.96149 4.03981 4.18458 4.28218 4.34268 4.37406 4.46281 4.53086 4.60660 4.68049 4.87057 4.88019 4.92632 4.94663 4.96736 5.04559 5.10973 5.13203 5.17656 5.21501 5.34231 5.43586 5.53578 5.62217 5.66429 5.68978 5.77575 6.05455 6.32980 6.65852 6.76540 7.33556 7.55872 8.91359 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.005658 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.667696 B = 4947.368436 C = 5566.098208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.101 4.101 4 C 0.095 3.905 5 H 0.030 0.970 6 N -0.681 5.681 7 C 0.059 3.941 8 C 0.237 3.763 9 H 0.019 0.981 10 O -0.576 6.576 11 C -0.590 4.590 12 H 0.057 0.943 13 C 0.026 3.974 14 N -0.899 5.899 15 Si 0.960 3.040 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.108 4.108 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.147 4.147 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.341 0.659 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.352 0.648 34 H 0.261 0.739 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 3.521 17.413 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.139 4.139 4 C -0.014 4.014 5 H 0.048 0.952 6 N -0.313 5.313 7 C -0.070 4.070 8 C 0.179 3.821 9 H 0.037 0.963 10 O -0.379 6.379 11 C -0.628 4.628 12 H 0.075 0.925 13 C -0.176 4.176 14 N -0.536 5.536 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.127 4.127 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.185 4.185 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.855 2.571 17.115 17.541 hybrid contribution 1.022 1.424 -1.127 2.084 sum -1.833 3.994 15.988 16.581 Atomic orbital electron populations 1.21772 0.95925 1.01529 1.01410 1.21364 0.95252 0.96622 1.01760 1.21516 0.94180 0.97393 1.00792 1.21590 0.95922 0.94749 0.89153 0.95225 1.60389 1.34950 1.33594 1.02344 1.22399 0.99218 0.93827 0.91576 1.19171 0.81943 0.91052 0.89933 0.96278 1.86525 1.17186 1.38029 1.96194 1.22016 1.51738 0.95550 0.93468 0.92486 1.25903 0.93451 0.96258 1.02016 1.70215 1.46112 1.14016 1.23261 0.85613 0.78982 0.78805 0.78157 1.19162 1.20907 1.19399 1.22734 0.95423 1.00109 0.94397 1.22921 0.97799 0.98878 0.96849 1.22792 0.97444 1.01296 0.95360 1.22943 0.96125 1.01572 0.97875 0.92676 0.91793 0.94065 0.93193 0.91642 0.94235 0.90581 0.84009 0.92430 0.96480 0.80395 0.92982 0.88661 0.90371 0.90309 0.89328 0.90927 0.91760 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.79 16 2 C -0.11 -3.02 5.46 30.60 0.17 -2.86 16 3 C -0.10 -2.70 5.02 30.59 0.15 -2.55 16 4 C 0.10 2.70 2.08 44.92 0.09 2.79 16 5 H 0.03 0.88 7.69 -2.39 -0.02 0.86 16 6 N -0.68 -24.34 5.30 -491.58 -2.61 -26.94 16 7 C 0.06 2.50 5.10 86.30 0.44 2.94 16 8 C 0.24 12.45 3.10 29.85 0.09 12.54 16 9 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 10 O -0.58 -30.14 12.17 -148.98 -1.81 -31.95 16 11 C -0.59 -33.07 8.76 25.60 0.22 -32.85 16 12 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 13 C 0.03 1.49 5.40 84.66 0.46 1.95 16 14 N -0.90 -54.81 12.84 21.45 0.28 -54.53 16 15 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.11 -2.47 3.02 -10.27 -0.03 -2.50 16 20 C -0.13 -2.29 7.62 31.18 0.24 -2.05 16 21 C -0.13 -2.28 8.09 31.18 0.25 -2.03 16 22 C -0.15 -3.29 6.58 31.12 0.20 -3.08 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.69 7.37 -2.38 -0.02 1.67 16 27 H 0.06 1.56 6.61 -2.39 -0.02 1.55 16 28 H 0.04 1.20 7.44 -2.39 -0.02 1.18 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.34 12.32 6.95 -89.69 -0.62 11.70 16 31 H 0.06 2.46 7.37 -2.38 -0.02 2.45 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.35 16.23 9.04 -74.06 -0.67 15.56 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.10 2.22 6.44 -2.39 -0.02 2.21 16 36 H 0.08 1.43 7.99 -2.39 -0.02 1.41 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.07 1.64 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -63.15 323.76 0.59 -62.56 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.30 Total: 35.44 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.00 Total: -30.49 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.33 Total: -81.47 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.81 Total: -31.95 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -63.15 0.59 -62.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930704145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.650 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds