Wall clock time and date at job start Sun Mar 29 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47254 * 2 1 4 4 C 1.53000 * 109.47307 * 176.15561 * 3 2 1 5 5 H 1.09000 * 109.47566 * 181.69889 * 4 3 2 6 6 N 1.46903 * 109.47231 * 301.70688 * 4 3 2 7 7 C 1.46900 * 110.99468 * 273.02770 * 6 4 3 8 8 C 1.53005 * 109.46956 * 174.94378 * 7 6 4 9 9 H 1.09004 * 109.47219 * 59.99889 * 8 7 6 10 10 O 1.42898 * 109.47057 * 300.00257 * 8 7 6 11 11 C 1.50698 * 109.47124 * 179.97438 * 8 7 6 12 12 H 1.08001 * 120.00266 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99858 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99939 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99917 * 180.02562 * 13 11 8 16 16 H 1.48493 * 109.47421 * 90.00177 * 15 13 11 17 17 H 1.48494 * 109.47327 * 210.00451 * 15 13 11 18 18 H 1.48511 * 109.47112 * 330.00051 * 15 13 11 19 19 C 1.53004 * 109.46709 * 61.70300 * 4 3 2 20 20 C 1.53777 * 113.61620 * 82.50526 * 19 4 3 21 21 C 1.53777 * 87.08215 * 139.97571 * 20 19 4 22 22 C 1.53778 * 87.08394 * 334.56737 * 21 20 19 23 23 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47062 * 300.00305 * 1 2 3 25 25 H 1.09002 * 109.46585 * 60.00062 * 1 2 3 26 26 H 1.09001 * 109.47334 * 240.00154 * 2 1 3 27 27 H 1.09004 * 109.47092 * 120.00033 * 2 1 3 28 28 H 1.09004 * 109.47054 * 56.16154 * 3 2 1 29 29 H 1.08993 * 109.47375 * 296.15884 * 3 2 1 30 30 H 1.00899 * 110.99812 * 149.07413 * 6 4 3 31 31 H 1.08998 * 109.47199 * 294.94159 * 7 6 4 32 32 H 1.08993 * 109.47615 * 54.94527 * 7 6 4 33 33 H 0.96711 * 113.99453 * 299.99569 * 10 8 7 34 34 H 0.96994 * 119.99599 * 179.97438 * 14 13 11 35 35 H 1.09003 * 112.90795 * 311.25189 * 19 4 3 36 36 H 1.08998 * 113.61393 * 254.53140 * 20 19 4 37 37 H 1.09004 * 113.61538 * 25.42936 * 20 19 4 38 38 H 1.09001 * 113.61708 * 220.01122 * 21 20 19 39 39 H 1.09007 * 113.68447 * 89.12660 * 21 20 19 40 40 H 1.08993 * 113.61379 * 270.87921 * 22 21 20 41 41 H 1.08999 * 113.61223 * 139.97542 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5670 1.4435 0.0967 5 1 3.9285 2.4714 0.1271 6 7 3.9807 0.7425 1.3196 7 6 4.0148 1.6600 2.4663 8 6 4.3258 0.8723 3.7406 9 1 5.2943 0.3828 3.6380 10 8 3.3134 -0.1143 3.9497 11 6 4.3614 1.8135 4.9169 12 1 4.1799 2.8681 4.7704 13 6 4.6246 1.3283 6.1804 14 7 4.8451 0.0441 6.3589 15 14 4.6680 2.4949 7.6386 16 1 3.3102 2.5976 8.2311 17 1 5.6152 1.9776 8.6585 18 1 5.1132 3.8373 7.1855 19 6 4.1557 0.7318 -1.1231 20 6 4.2659 1.6298 -2.3666 21 6 5.6246 0.9606 -2.6326 22 6 5.6926 0.6781 -1.1226 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6216 1.9758 0.8536 29 1 1.7341 1.9360 -0.9223 30 1 4.8733 0.2894 1.1922 31 1 4.7871 2.4124 2.3068 32 1 3.0464 2.1494 2.5690 33 1 2.4234 0.2506 4.0499 34 1 5.0306 -0.2971 7.2477 35 1 3.6851 -0.2314 -1.3204 36 1 3.5165 1.4147 -3.1283 37 1 4.3406 2.6919 -2.1329 38 1 6.3910 1.6522 -2.9825 39 1 5.5570 0.0598 -3.2428 40 1 6.1574 1.4798 -0.5489 41 1 6.0950 -0.3055 -0.8801 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930704146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:20 Heat of formation + Delta-G solvation = -74.217240 kcal Electronic energy + Delta-G solvation = -18142.833025 eV Core-core repulsion = 15442.507898 eV Total energy + Delta-G solvation = -2700.325127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46641 -38.08838 -36.49247 -34.41475 -34.15253 -30.88356 -28.91044 -26.85604 -26.15464 -25.49250 -23.25258 -22.40098 -21.06625 -19.91192 -18.93407 -17.35249 -16.65927 -16.47712 -16.18070 -15.79437 -15.47018 -15.16630 -14.94614 -14.37648 -14.24675 -13.70749 -13.34262 -13.27254 -12.95870 -12.93164 -12.79842 -12.74029 -12.58450 -12.44144 -12.10130 -11.97783 -11.56202 -11.46966 -11.13251 -11.04544 -10.95833 -10.85159 -10.70825 -10.03348 -9.07888 -8.12698 -6.38869 1.40192 1.40441 1.51374 2.38703 3.12973 3.29028 3.74713 3.75622 3.94687 4.03438 4.20189 4.29742 4.36755 4.39057 4.46980 4.54414 4.59790 4.73479 4.85633 4.87150 4.93671 4.96645 4.97918 5.04805 5.08788 5.12883 5.16632 5.23882 5.35623 5.44179 5.56305 5.61236 5.66041 5.72860 5.79185 6.07495 6.31492 6.60881 6.76262 7.35334 7.63088 8.91704 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.005660 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.693270 B = 4945.712078 C = 5553.421416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.098 4.098 4 C 0.095 3.905 5 H 0.029 0.971 6 N -0.673 5.673 7 C 0.058 3.942 8 C 0.237 3.763 9 H 0.015 0.985 10 O -0.567 6.567 11 C -0.589 4.589 12 H 0.056 0.944 13 C 0.026 3.974 14 N -0.899 5.899 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.150 4.150 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.333 0.667 31 H 0.015 0.985 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.261 0.739 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 2.991 -17.241 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.136 4.136 4 C -0.014 4.014 5 H 0.047 0.953 6 N -0.304 5.304 7 C -0.071 4.071 8 C 0.179 3.821 9 H 0.033 0.967 10 O -0.370 6.370 11 C -0.627 4.627 12 H 0.075 0.925 13 C -0.176 4.176 14 N -0.536 5.536 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.127 4.127 20 C -0.165 4.165 21 C -0.169 4.169 22 C -0.187 4.187 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.426 2.219 -17.031 17.513 hybrid contribution 0.611 1.350 1.115 1.855 sum -2.815 3.569 -15.916 16.552 Atomic orbital electron populations 1.21760 0.95946 1.01454 1.01380 1.21360 0.95198 0.96521 1.01837 1.21483 0.93972 0.97459 1.00679 1.21603 0.96053 0.94760 0.89021 0.95315 1.60414 1.35446 1.31472 1.03090 1.22452 0.99091 0.93743 0.91853 1.19126 0.87109 0.86066 0.89812 0.96693 1.86499 1.18030 1.37174 1.95295 1.22051 1.51555 0.94896 0.94185 0.92540 1.25896 0.93420 0.96377 1.01942 1.70223 1.46275 1.14239 1.22906 0.85560 0.78173 0.79131 0.78700 1.19770 1.20808 1.19014 1.22767 0.95393 1.00123 0.94434 1.22891 0.97898 0.98785 0.96896 1.22759 0.97606 1.01207 0.95303 1.22958 0.96278 1.01543 0.97954 0.92776 0.93843 0.92049 0.91929 0.92781 0.94112 0.90871 0.84849 0.96659 0.92272 0.80583 0.93004 0.88469 0.90277 0.90449 0.91013 0.89220 0.91552 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.11 -2.94 5.46 30.59 0.17 -2.77 16 3 C -0.10 -2.57 5.07 30.59 0.16 -2.42 16 4 C 0.10 2.67 2.10 44.92 0.09 2.77 16 5 H 0.03 0.85 7.63 -2.39 -0.02 0.83 16 6 N -0.67 -23.86 5.25 -491.56 -2.58 -26.44 16 7 C 0.06 2.44 5.05 86.31 0.44 2.88 16 8 C 0.24 12.41 3.07 29.85 0.09 12.50 16 9 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 10 O -0.57 -30.55 12.60 -148.98 -1.88 -32.43 16 11 C -0.59 -32.98 8.76 25.60 0.22 -32.76 16 12 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 13 C 0.03 1.48 5.40 84.66 0.46 1.94 16 14 N -0.90 -54.73 12.84 21.45 0.28 -54.46 16 15 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 C -0.11 -2.47 3.04 -10.27 -0.03 -2.50 16 20 C -0.13 -2.31 7.63 31.12 0.24 -2.07 16 21 C -0.13 -2.30 8.08 31.12 0.25 -2.05 16 22 C -0.15 -3.36 6.51 31.12 0.20 -3.16 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.48 6.50 -2.39 -0.02 1.47 16 27 H 0.05 1.79 7.43 -2.38 -0.02 1.77 16 28 H 0.04 1.21 7.55 -2.38 -0.02 1.19 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.33 11.99 7.39 -89.69 -0.66 11.33 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 2.46 7.50 -2.39 -0.02 2.44 16 33 H 0.35 17.15 9.04 -74.05 -0.67 16.48 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.10 2.24 6.32 -2.39 -0.02 2.23 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.44 7.96 -2.38 -0.02 1.42 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -62.88 324.53 0.51 -62.38 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.34 Total: 35.35 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.00 Total: -30.34 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.30 Total: -80.90 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.88 Total: -32.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.88 0.51 -62.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930704146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.838 kcal (2) G-P(sol) polarization free energy of solvation -62.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds