Wall clock time and date at job start Sun Mar 29 2020 22:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 H 1.09002 * 109.50470 * 55.07580 * 3 2 1 5 5 C 1.53126 * 109.50311 * 295.00345 * 3 2 1 6 6 C 1.53121 * 109.15865 * 182.40523 * 5 3 2 7 7 C 1.53038 * 109.28081 * 57.65389 * 6 5 3 8 8 H 1.08996 * 109.46494 * 60.83399 * 7 6 5 9 9 C 1.52997 * 109.46301 * 180.80511 * 7 6 5 10 10 N 1.46852 * 109.52060 * 300.81658 * 7 6 5 11 11 C 1.46901 * 110.99747 * 185.83587 * 10 7 6 12 12 C 1.53004 * 109.46855 * 165.19274 * 11 10 7 13 13 H 1.09001 * 109.46487 * 60.00643 * 12 11 10 14 14 O 1.42900 * 109.47354 * 300.00633 * 12 11 10 15 15 C 1.50703 * 109.46715 * 180.02562 * 12 11 10 16 16 H 1.07989 * 120.00444 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99640 * 180.02562 * 15 12 11 18 18 N 1.31505 * 120.00130 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 119.99998 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47267 * 89.99709 * 19 17 15 21 21 H 1.48496 * 109.47003 * 210.00084 * 19 17 15 22 22 H 1.48506 * 109.47039 * 330.00060 * 19 17 15 23 23 C 1.46851 * 111.19547 * 61.74832 * 10 7 6 24 24 H 1.08998 * 109.47261 * 59.99952 * 1 2 3 25 25 H 1.09003 * 109.46798 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47199 * 299.99677 * 1 2 3 27 27 H 1.09001 * 109.47199 * 240.00323 * 2 1 3 28 28 H 1.08998 * 109.47261 * 120.00048 * 2 1 3 29 29 H 1.08990 * 109.52307 * 62.49859 * 5 3 2 30 30 H 1.09000 * 109.57349 * 302.33420 * 5 3 2 31 31 H 1.09000 * 109.50510 * 297.70919 * 6 5 3 32 32 H 1.08998 * 109.50351 * 177.59426 * 6 5 3 33 33 H 1.08996 * 109.47463 * 187.38109 * 9 7 6 34 34 H 1.09003 * 109.46918 * 307.37996 * 9 7 6 35 35 H 1.09006 * 109.47166 * 67.37837 * 9 7 6 36 36 H 1.08995 * 109.47640 * 285.20011 * 11 10 7 37 37 H 1.09007 * 109.46743 * 45.19912 * 11 10 7 38 38 H 0.96700 * 113.99869 * 299.99653 * 14 12 11 39 39 H 0.97007 * 120.00431 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.46723 * 58.26713 * 23 10 7 41 41 H 1.08996 * 109.45972 * 178.24005 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9817 0.8424 5 6 1.6352 2.1278 -1.3081 6 6 2.2005 3.5507 -1.3258 7 6 3.7215 3.4922 -1.1667 8 1 4.1521 2.9311 -1.9960 9 6 4.2888 4.9131 -1.1637 10 7 4.0572 2.8287 0.0997 11 6 5.5035 2.8773 0.3522 12 6 5.7781 2.5212 1.8147 13 1 5.4070 1.5171 2.0199 14 8 5.1141 3.4577 2.6657 15 6 7.2618 2.5717 2.0738 16 1 7.9409 2.8321 1.2755 17 6 7.7523 2.2855 3.3302 18 7 9.0470 2.3290 3.5563 19 14 6.5777 1.8344 4.7109 20 1 6.3740 0.3635 4.7269 21 1 7.1508 2.2689 6.0101 22 1 5.2743 2.5122 4.4933 23 6 3.5656 1.4450 0.1207 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5482 2.1669 -1.3777 30 1 2.0344 1.5668 -2.1531 31 1 1.7704 4.1235 -0.5042 32 1 1.9520 4.0293 -2.2730 33 1 5.3777 4.8696 -1.1825 34 1 3.9314 5.4489 -2.0430 35 1 3.9614 5.4331 -0.2633 36 1 6.0100 2.1631 -0.2970 37 1 5.8746 3.8815 0.1469 38 1 5.3955 4.3739 2.5374 39 1 9.3921 2.1280 4.4404 40 1 3.9969 0.8936 -0.7147 41 1 3.8565 0.9706 1.0579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931020766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:30 Heat of formation + Delta-G solvation = -66.659605 kcal Electronic energy + Delta-G solvation = -18643.826975 eV Core-core repulsion = 15943.829572 eV Total energy + Delta-G solvation = -2699.997403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.34020 -36.24404 -34.83689 -32.35293 -32.17732 -30.53935 -28.49845 -26.80837 -25.02058 -22.94861 -22.75925 -20.47525 -19.85770 -19.42442 -17.20374 -15.57572 -15.03363 -14.83711 -14.70477 -14.52673 -14.11458 -13.69450 -13.54828 -13.20273 -13.00771 -12.61106 -12.47645 -12.04624 -11.98757 -11.54832 -11.44691 -11.14243 -11.04263 -10.92187 -10.88550 -10.64277 -10.43895 -10.33858 -10.16176 -9.75662 -9.68415 -8.94544 -8.57483 -8.18048 -7.65382 -6.09136 -4.19797 3.42404 3.51899 3.80648 4.28189 4.58317 4.83532 4.92537 4.98149 5.09509 5.26541 5.29007 5.32825 5.51596 5.63566 5.65725 5.68375 5.77608 5.83975 5.91551 5.93481 5.97348 6.03704 6.05832 6.14328 6.15237 6.18933 6.25892 6.33604 6.36064 6.45266 6.52356 6.66447 6.73854 7.36397 7.50176 7.71779 7.79158 8.34128 8.88227 9.18454 9.56694 11.01622 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.007283 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.071309 B = 3843.468538 C = 4595.523094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.030 0.970 9 C -0.147 4.147 10 N -0.524 5.524 11 C 0.035 3.965 12 C 0.204 3.796 13 H 0.050 0.950 14 O -0.569 6.569 15 C -0.565 4.565 16 H 0.070 0.930 17 C 0.083 3.917 18 N -0.895 5.895 19 Si 0.870 3.130 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.214 1.214 23 C 0.062 3.938 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.352 0.648 39 H 0.264 0.736 40 H 0.024 0.976 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 -0.056 -9.554 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.047 0.953 9 C -0.204 4.204 10 N -0.248 5.248 11 C -0.093 4.093 12 C 0.146 3.854 13 H 0.067 0.933 14 O -0.374 6.374 15 C -0.602 4.602 16 H 0.088 0.912 17 C -0.121 4.121 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.137 1.137 23 C -0.066 4.066 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.198 0.802 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.715 -0.354 -8.860 18.044 hybrid contribution 0.549 -0.370 -0.198 0.691 sum -15.166 -0.724 -9.058 17.680 Atomic orbital electron populations 1.21788 0.96050 1.01134 1.01780 1.21539 0.95682 0.96659 1.01924 1.21211 0.95494 0.95316 0.98259 0.90305 1.21656 1.00032 0.96049 0.97396 1.21613 0.94996 0.96852 1.01290 1.21568 0.95143 0.95213 0.90930 0.95251 1.21911 1.00996 0.95738 1.01781 1.61970 1.15765 1.15648 1.31429 1.22927 0.85052 1.01246 1.00029 1.19675 0.91710 0.89488 0.84561 0.93253 1.86658 1.68364 1.19023 1.63353 1.21545 0.91045 1.49931 0.97728 0.91206 1.24978 0.94977 0.93053 0.99051 1.69961 1.12678 1.47886 1.22741 0.87041 0.84828 0.78432 0.80052 1.21581 1.22345 1.13654 1.22103 0.94046 0.89614 1.00870 0.92735 0.93165 0.92746 0.92349 0.91839 0.92088 0.92729 0.91162 0.92289 0.92338 0.92940 0.91517 0.95341 0.90623 0.80214 0.92661 0.95813 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 37.16 0.36 -1.11 16 2 C -0.12 -1.38 5.41 -26.73 -0.14 -1.53 16 3 C -0.08 -1.12 2.35 -90.53 -0.21 -1.33 16 4 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 5 C -0.11 -1.34 4.98 -26.60 -0.13 -1.47 16 6 C -0.11 -1.36 5.37 -26.65 -0.14 -1.50 16 7 C 0.08 1.17 2.44 -67.72 -0.17 1.00 16 8 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 9 C -0.15 -1.99 8.56 37.16 0.32 -1.67 16 10 N -0.52 -9.06 4.32 -226.68 -0.98 -10.04 16 11 C 0.03 0.69 4.36 -3.82 -0.02 0.68 16 12 C 0.20 4.81 2.29 -27.88 -0.06 4.75 16 13 H 0.05 1.22 6.03 -51.93 -0.31 0.91 16 14 O -0.57 -13.22 10.01 -35.23 -0.35 -13.58 16 15 C -0.56 -15.81 9.34 -34.44 -0.32 -16.13 16 16 H 0.07 2.10 7.99 -52.49 -0.42 1.69 16 17 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 19 Si 0.87 22.18 26.99 -169.99 -4.59 17.59 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 22 H -0.21 -5.37 5.31 56.52 0.30 -5.07 16 23 C 0.06 1.01 4.59 -3.83 -0.02 0.99 16 24 H 0.05 0.50 6.62 -51.93 -0.34 0.15 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.63 6.69 -51.93 -0.35 0.29 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.84 6.46 -51.93 -0.34 0.50 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 37 H 0.08 1.48 5.60 -51.93 -0.29 1.19 16 38 H 0.35 7.39 9.04 45.56 0.41 7.80 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.41 6.43 -51.93 -0.33 1.08 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -30.48 308.56 -7.84 -38.31 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.70 Total: 4.89 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.64 Total: -15.00 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.21 Total: -36.86 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.35 Total: -13.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.59 Total: 17.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.48 -7.84 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931020766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.347 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds