Wall clock time and date at job start Sun Mar 29 2020 22:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 H 1.09002 * 109.45023 * 182.98741 * 3 2 1 5 5 C 1.53041 * 109.46284 * 63.01891 * 3 2 1 6 6 C 1.53118 * 109.27495 * 180.80449 * 5 3 2 7 7 C 1.53121 * 109.16281 * 57.65263 * 6 5 3 8 8 C 1.53038 * 109.27787 * 302.34331 * 7 6 5 9 9 H 1.08995 * 109.45978 * 299.16562 * 8 7 6 10 10 C 1.53000 * 109.45259 * 179.18853 * 8 7 6 11 11 N 1.46840 * 109.46097 * 302.96098 * 3 2 1 12 12 C 1.46896 * 111.00616 * 305.85731 * 11 3 2 13 13 C 1.52999 * 109.46841 * 298.02763 * 12 11 3 14 14 H 1.08999 * 109.47705 * 51.86993 * 13 12 11 15 15 O 1.42901 * 109.47054 * 291.86894 * 13 12 11 16 16 C 1.50700 * 109.47186 * 171.87081 * 13 12 11 17 17 H 1.08003 * 120.00215 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00208 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00029 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00215 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47024 * 89.99982 * 20 18 16 22 22 H 1.48496 * 109.47273 * 210.00044 * 20 18 16 23 23 H 1.48500 * 109.46686 * 330.00142 * 20 18 16 24 24 H 1.08997 * 109.47286 * 297.73228 * 1 2 3 25 25 H 1.08990 * 109.47217 * 57.73825 * 1 2 3 26 26 H 1.09000 * 109.47163 * 177.73736 * 1 2 3 27 27 H 1.08999 * 109.47022 * 239.99731 * 2 1 3 28 28 H 1.09006 * 109.47387 * 120.00104 * 2 1 3 29 29 H 1.08998 * 109.49906 * 300.74121 * 5 3 2 30 30 H 1.08998 * 109.50027 * 60.85867 * 5 3 2 31 31 H 1.09003 * 109.51635 * 177.55653 * 6 5 3 32 32 H 1.08999 * 109.52230 * 297.74239 * 6 5 3 33 33 H 1.08995 * 109.50118 * 182.39882 * 7 6 5 34 34 H 1.08995 * 109.53206 * 62.30654 * 7 6 5 35 35 H 1.08997 * 109.47131 * 294.57786 * 10 8 7 36 36 H 1.09000 * 109.46689 * 54.57746 * 10 8 7 37 37 H 1.08999 * 109.46854 * 174.57324 * 10 8 7 38 38 H 1.09002 * 109.46924 * 58.01918 * 12 11 3 39 39 H 1.08998 * 109.47417 * 178.02355 * 12 11 3 40 40 H 0.96696 * 114.00342 * 295.86611 * 15 13 12 41 41 H 0.97002 * 119.99643 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4426 -0.0536 5 6 1.5927 2.1415 1.2859 6 6 2.0881 3.5903 1.2723 7 6 1.5434 4.2960 0.0273 8 6 1.9922 3.5345 -1.2221 9 1 3.0810 3.5249 -1.2699 10 6 1.4332 4.2249 -2.4678 11 7 1.4928 2.1548 -1.1617 12 6 1.7861 1.4339 -2.4075 13 6 3.3012 1.3501 -2.6036 14 1 3.7629 0.9502 -1.7009 15 8 3.8204 2.6554 -2.8660 16 6 3.6076 0.4442 -3.7683 17 1 2.8023 -0.0246 -4.3143 18 6 4.9160 0.2146 -4.1375 19 7 5.8967 0.7859 -3.4730 20 14 5.2959 -0.9078 -5.5816 21 1 5.3445 -0.1072 -6.8314 22 1 6.6088 -1.5667 -5.3645 23 1 4.2362 -1.9417 -5.6969 24 1 -0.3634 0.4782 0.9096 25 1 -0.3633 0.5485 -0.8689 26 1 -0.3633 -1.0269 -0.0406 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5045 2.1295 1.3469 30 1 2.0118 1.6216 2.1473 31 1 1.7349 4.1043 2.1662 32 1 3.1778 3.6024 1.2505 33 1 1.9273 5.3154 -0.0103 34 1 0.4545 4.3185 0.0683 35 1 0.3458 4.1503 -2.4674 36 1 1.7254 5.2750 -2.4630 37 1 1.8303 3.7413 -3.3602 38 1 1.3709 0.4276 -2.3513 39 1 1.3397 1.9648 -3.2483 40 1 3.5008 3.0475 -3.6901 41 1 6.8172 0.6246 -3.7330 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931067876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:46 Heat of formation + Delta-G solvation = -62.636903 kcal Electronic energy + Delta-G solvation = -19384.998669 eV Core-core repulsion = 16685.175703 eV Total energy + Delta-G solvation = -2699.822966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48341 -35.66388 -34.06968 -32.67351 -32.03587 -29.89276 -27.94750 -26.37742 -24.98662 -23.82258 -21.83758 -20.43925 -20.06338 -18.23134 -17.03658 -15.46107 -14.94349 -14.65522 -14.53632 -14.46111 -13.85996 -13.75375 -13.14590 -12.72766 -12.48556 -12.28068 -11.97335 -11.63374 -11.44090 -11.34573 -11.06235 -10.97183 -10.95236 -10.83002 -10.63496 -10.51135 -10.30929 -10.01949 -9.84746 -9.65315 -9.52220 -9.18066 -8.57851 -8.51690 -6.99149 -6.00296 -4.19565 3.25914 3.33448 3.36142 4.37348 4.63180 5.19426 5.22320 5.25168 5.32136 5.50099 5.65660 5.74594 5.84364 5.92449 5.96060 6.03959 6.10685 6.13944 6.24853 6.28605 6.32022 6.34762 6.41303 6.46015 6.46211 6.54409 6.65054 6.68149 6.73086 6.78210 6.83647 7.02569 7.14181 7.67682 7.77088 7.89607 8.02641 8.23059 8.84642 9.36090 9.56950 11.01833 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.008029 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.104241 B = 3486.456631 C = 3903.344616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.046 0.954 5 C -0.109 4.109 6 C -0.120 4.120 7 C -0.110 4.110 8 C 0.071 3.929 9 H 0.081 0.919 10 C -0.137 4.137 11 N -0.525 5.525 12 C 0.021 3.979 13 C 0.199 3.801 14 H 0.056 0.944 15 O -0.562 6.562 16 C -0.571 4.571 17 H 0.055 0.945 18 C 0.079 3.921 19 N -0.860 5.860 20 Si 0.886 3.114 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.343 0.657 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 3.661 6.664 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.025 4.025 4 H 0.064 0.936 5 C -0.147 4.147 6 C -0.158 4.158 7 C -0.148 4.148 8 C -0.037 4.037 9 H 0.098 0.902 10 C -0.194 4.194 11 N -0.250 5.250 12 C -0.106 4.106 13 C 0.141 3.859 14 H 0.074 0.926 15 O -0.366 6.366 16 C -0.609 4.609 17 H 0.073 0.927 18 C -0.127 4.127 19 N -0.496 5.496 20 Si 0.714 3.286 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.188 0.812 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.712 3.594 7.329 11.939 hybrid contribution 0.953 -0.712 -1.470 1.891 sum -7.759 2.882 5.860 10.141 Atomic orbital electron populations 1.21671 0.95789 0.99994 1.02232 1.21606 0.96431 0.95904 1.01892 1.21514 0.97361 0.92989 0.90653 0.93584 1.21637 1.01208 0.95160 0.96692 1.21561 1.00523 0.96082 0.97600 1.21644 1.00511 0.97960 0.94721 1.21769 1.00300 0.88195 0.93415 0.90164 1.21846 1.00164 0.99123 0.98301 1.62308 1.58360 1.01669 1.02619 1.23054 0.99122 0.97935 0.90520 1.19968 0.87636 0.81673 0.96640 0.92640 1.86524 1.74530 1.33118 1.42394 1.21667 0.92247 1.30532 1.16466 0.92672 1.25047 0.96503 0.94938 0.96210 1.70076 0.99110 1.41416 1.38998 0.86714 0.77749 0.81097 0.83067 1.20586 1.21202 1.19842 0.93468 0.91429 0.94287 0.91006 0.92696 0.91464 0.92574 0.92830 0.92392 0.92612 0.92262 0.93386 0.93421 0.92020 0.91068 0.91788 0.81160 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.25 37.16 0.34 -1.66 16 2 C -0.12 -1.96 5.13 -26.73 -0.14 -2.09 16 3 C 0.08 1.45 1.63 -67.72 -0.11 1.34 16 4 H 0.05 0.95 6.49 -51.93 -0.34 0.62 16 5 C -0.11 -1.60 5.11 -26.65 -0.14 -1.73 16 6 C -0.12 -1.71 6.00 -26.61 -0.16 -1.87 16 7 C -0.11 -1.63 5.37 -26.65 -0.14 -1.78 16 8 C 0.07 1.23 1.77 -67.72 -0.12 1.11 16 9 H 0.08 1.67 5.71 -51.93 -0.30 1.37 16 10 C -0.14 -2.17 8.25 37.16 0.31 -1.87 16 11 N -0.52 -9.33 3.66 -218.76 -0.80 -10.13 16 12 C 0.02 0.43 4.03 -3.83 -0.02 0.41 16 13 C 0.20 4.84 2.54 -27.88 -0.07 4.77 16 14 H 0.06 1.52 6.19 -51.93 -0.32 1.20 16 15 O -0.56 -13.70 9.04 -35.23 -0.32 -14.02 16 16 C -0.57 -15.36 8.72 -34.44 -0.30 -15.66 16 17 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 19 N -0.86 -25.19 12.84 55.43 0.71 -24.47 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.05 0.62 6.60 -51.93 -0.34 0.28 16 25 H 0.07 1.05 6.95 -51.93 -0.36 0.69 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.32 6.46 -51.93 -0.34 0.99 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.95 6.52 -51.93 -0.34 0.61 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.04 4.55 -51.93 -0.24 0.81 16 38 H 0.07 1.45 5.75 -51.93 -0.30 1.15 16 39 H 0.06 1.27 6.20 -51.93 -0.32 0.95 16 40 H 0.34 7.76 7.36 45.56 0.34 8.09 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -28.25 297.70 -7.78 -36.03 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.20 Total: 8.97 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.64 Total: -16.93 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.09 Total: -34.61 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.32 Total: -14.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.25 -7.78 -36.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931067876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.608 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds