Wall clock time and date at job start Sun Mar 29 2020 22:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 H 1.09002 * 109.45023 * 182.98741 * 3 2 1 5 5 C 1.53041 * 109.46284 * 63.01891 * 3 2 1 6 6 C 1.53118 * 109.27495 * 180.80449 * 5 3 2 7 7 C 1.53121 * 109.16281 * 57.65263 * 6 5 3 8 8 C 1.53038 * 109.27787 * 302.34331 * 7 6 5 9 9 H 1.08995 * 109.45978 * 299.16562 * 8 7 6 10 10 C 1.53000 * 109.45259 * 179.18853 * 8 7 6 11 11 N 1.46840 * 109.46097 * 302.96098 * 3 2 1 12 12 C 1.46896 * 111.00616 * 305.85731 * 11 3 2 13 13 C 1.52999 * 109.46841 * 298.02763 * 12 11 3 14 14 H 1.08999 * 109.47705 * 51.86993 * 13 12 11 15 15 O 1.42901 * 109.47054 * 291.86894 * 13 12 11 16 16 C 1.50700 * 109.47186 * 171.87081 * 13 12 11 17 17 H 1.08003 * 120.00215 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00208 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00029 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00215 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47024 * 89.99982 * 20 18 16 22 22 H 1.48496 * 109.47273 * 210.00044 * 20 18 16 23 23 H 1.48500 * 109.46686 * 330.00142 * 20 18 16 24 24 H 1.08997 * 109.47286 * 297.73228 * 1 2 3 25 25 H 1.08990 * 109.47217 * 57.73825 * 1 2 3 26 26 H 1.09000 * 109.47163 * 177.73736 * 1 2 3 27 27 H 1.08999 * 109.47022 * 239.99731 * 2 1 3 28 28 H 1.09006 * 109.47387 * 120.00104 * 2 1 3 29 29 H 1.08998 * 109.49906 * 300.74121 * 5 3 2 30 30 H 1.08998 * 109.50027 * 60.85867 * 5 3 2 31 31 H 1.09003 * 109.51635 * 177.55653 * 6 5 3 32 32 H 1.08999 * 109.52230 * 297.74239 * 6 5 3 33 33 H 1.08995 * 109.50118 * 182.39882 * 7 6 5 34 34 H 1.08995 * 109.53206 * 62.30654 * 7 6 5 35 35 H 1.08997 * 109.47131 * 294.57786 * 10 8 7 36 36 H 1.09000 * 109.46689 * 54.57746 * 10 8 7 37 37 H 1.08999 * 109.46854 * 174.57324 * 10 8 7 38 38 H 1.09002 * 109.46924 * 58.01918 * 12 11 3 39 39 H 1.08998 * 109.47417 * 178.02355 * 12 11 3 40 40 H 0.96696 * 114.00342 * 295.86611 * 15 13 12 41 41 H 0.97002 * 119.99643 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4426 -0.0536 5 6 1.5927 2.1415 1.2859 6 6 2.0881 3.5903 1.2723 7 6 1.5434 4.2960 0.0273 8 6 1.9922 3.5345 -1.2221 9 1 3.0810 3.5249 -1.2699 10 6 1.4332 4.2249 -2.4678 11 7 1.4928 2.1548 -1.1617 12 6 1.7861 1.4339 -2.4075 13 6 3.3012 1.3501 -2.6036 14 1 3.7629 0.9502 -1.7009 15 8 3.8204 2.6554 -2.8660 16 6 3.6076 0.4442 -3.7683 17 1 2.8023 -0.0246 -4.3143 18 6 4.9160 0.2146 -4.1375 19 7 5.8967 0.7859 -3.4730 20 14 5.2959 -0.9078 -5.5816 21 1 5.3445 -0.1072 -6.8314 22 1 6.6088 -1.5667 -5.3645 23 1 4.2362 -1.9417 -5.6969 24 1 -0.3634 0.4782 0.9096 25 1 -0.3633 0.5485 -0.8689 26 1 -0.3633 -1.0269 -0.0406 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5045 2.1295 1.3469 30 1 2.0118 1.6216 2.1473 31 1 1.7349 4.1043 2.1662 32 1 3.1778 3.6024 1.2505 33 1 1.9273 5.3154 -0.0103 34 1 0.4545 4.3185 0.0683 35 1 0.3458 4.1503 -2.4674 36 1 1.7254 5.2750 -2.4630 37 1 1.8303 3.7413 -3.3602 38 1 1.3709 0.4276 -2.3513 39 1 1.3397 1.9648 -3.2483 40 1 3.5008 3.0475 -3.6901 41 1 6.8172 0.6246 -3.7330 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931067876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:45 Heat of formation + Delta-G solvation = -80.933266 kcal Electronic energy + Delta-G solvation = -19385.792059 eV Core-core repulsion = 16685.175703 eV Total energy + Delta-G solvation = -2700.616355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94638 -37.46307 -35.39013 -34.38025 -33.92592 -31.26814 -29.70391 -27.73737 -26.66171 -25.28553 -23.48941 -21.88249 -21.42276 -19.69758 -19.08790 -16.95567 -16.71273 -16.50672 -16.16649 -15.91155 -15.36457 -15.09409 -14.71917 -14.34933 -14.00229 -13.72170 -13.26539 -13.20524 -12.87663 -12.85477 -12.80844 -12.60204 -12.47582 -12.20271 -12.10519 -12.07342 -11.89015 -11.43825 -11.33484 -11.13997 -10.99088 -10.77894 -10.66320 -10.44112 -8.69645 -8.10482 -6.39978 1.36813 1.37692 1.48216 2.36542 3.10051 3.19285 3.92248 3.97652 4.08953 4.17482 4.21360 4.39361 4.46301 4.54278 4.66204 4.67165 4.75053 4.81706 4.86631 4.92985 4.99130 5.02631 5.12668 5.14676 5.18748 5.21101 5.26091 5.35932 5.40853 5.43538 5.50248 5.58559 5.63715 5.71022 5.80462 6.03271 6.40764 6.51826 6.74718 7.32014 7.52415 8.88506 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.008029 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.104241 B = 3486.456631 C = 3903.344616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.119 4.119 3 C 0.082 3.918 4 H 0.001 0.999 5 C -0.103 4.103 6 C -0.120 4.120 7 C -0.105 4.105 8 C 0.068 3.932 9 H 0.039 0.961 10 C -0.131 4.131 11 N -0.510 5.510 12 C 0.039 3.961 13 C 0.207 3.793 14 H 0.016 0.984 15 O -0.569 6.569 16 C -0.584 4.584 17 H 0.057 0.943 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.350 0.650 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 3.928 7.053 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.157 4.157 3 C -0.027 4.027 4 H 0.019 0.981 5 C -0.140 4.140 6 C -0.158 4.158 7 C -0.142 4.142 8 C -0.040 4.040 9 H 0.057 0.943 10 C -0.188 4.188 11 N -0.234 5.234 12 C -0.090 4.090 13 C 0.148 3.852 14 H 0.034 0.966 15 O -0.374 6.374 16 C -0.622 4.622 17 H 0.076 0.924 18 C -0.176 4.176 19 N -0.537 5.537 20 Si 0.780 3.220 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.196 0.804 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.677 3.864 7.717 13.729 hybrid contribution 1.587 -0.776 -1.554 2.353 sum -9.090 3.088 6.163 11.408 Atomic orbital electron populations 1.21587 0.93625 1.00955 1.02530 1.21580 0.98186 0.94875 1.01036 1.21578 0.94754 0.94332 0.92055 0.98148 1.21612 1.02066 0.95190 0.95144 1.21583 0.99380 0.96127 0.98695 1.21607 1.01281 0.98124 0.93225 1.21793 0.97991 0.88343 0.95901 0.94269 1.21786 1.00686 0.99686 0.96690 1.62417 1.57464 1.01836 1.01659 1.22754 0.95752 0.98329 0.92137 1.19773 0.90050 0.81159 0.94192 0.96619 1.86514 1.75121 1.33000 1.42770 1.22080 0.92482 1.30688 1.16966 0.92440 1.25878 0.96391 0.96400 0.98942 1.70221 0.99402 1.43245 1.40879 0.85627 0.77497 0.79197 0.79677 1.19779 1.21128 1.18974 0.91646 0.92610 0.92952 0.94096 0.91424 0.89896 0.91267 0.89862 0.94364 0.91329 0.90854 0.92130 0.91838 0.93659 0.91357 0.91214 0.80445 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.25 71.98 0.67 -2.79 16 2 C -0.12 -3.85 5.13 30.59 0.16 -3.69 16 3 C 0.08 2.86 1.63 44.94 0.07 2.93 16 4 H 0.00 0.02 6.49 -2.39 -0.02 0.01 16 5 C -0.10 -2.81 5.11 30.65 0.16 -2.65 16 6 C -0.12 -3.21 6.00 30.67 0.18 -3.02 16 7 C -0.10 -2.87 5.37 30.65 0.16 -2.71 16 8 C 0.07 2.33 1.77 44.94 0.08 2.41 16 9 H 0.04 1.70 5.71 -2.39 -0.01 1.68 16 10 C -0.13 -4.01 8.25 71.98 0.59 -3.42 16 11 N -0.51 -18.07 3.66 -846.03 -3.10 -21.17 16 12 C 0.04 1.58 4.03 86.30 0.35 1.93 16 13 C 0.21 10.49 2.54 29.85 0.08 10.57 16 14 H 0.02 0.94 6.19 -2.39 -0.01 0.92 16 15 O -0.57 -28.97 9.04 -148.98 -1.35 -30.31 16 16 C -0.58 -32.15 8.72 25.60 0.22 -31.93 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 18 C 0.03 1.47 5.40 84.65 0.46 1.93 16 19 N -0.90 -54.34 12.84 21.45 0.28 -54.07 16 20 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H 0.06 1.51 6.60 -2.39 -0.02 1.49 16 25 H 0.05 1.62 6.95 -2.39 -0.02 1.61 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.56 6.46 -2.39 -0.02 1.54 16 28 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.08 2.05 6.52 -2.39 -0.02 2.04 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.52 4.55 -2.39 -0.01 1.51 16 38 H 0.07 2.83 5.75 -2.39 -0.01 2.82 16 39 H 0.07 2.78 6.20 -2.39 -0.01 2.76 16 40 H 0.35 16.36 7.36 -74.06 -0.55 15.81 16 41 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -62.29 297.70 1.50 -60.80 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.46 Total: 29.38 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 3.18 Total: -30.44 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -2.82 Total: -75.24 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.35 Total: -30.31 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.29 1.50 -60.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931067876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.138 kcal (2) G-P(sol) polarization free energy of solvation -62.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds