Wall clock time and date at job start Sun Mar 29 2020 22:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46875 * 2 1 4 4 C 1.52992 * 109.47283 * 239.99848 * 2 1 3 5 5 O 1.42899 * 109.46761 * 119.99913 * 2 1 3 6 6 C 1.42898 * 113.99888 * 59.99958 * 5 2 1 7 7 C 1.53006 * 109.46622 * 179.97438 * 6 5 2 8 8 H 1.09004 * 110.36463 * 184.10160 * 7 6 5 9 9 C 1.54377 * 110.41410 * 306.45940 * 7 6 5 10 10 C 1.54257 * 105.06382 * 142.63460 * 9 7 6 11 11 C 1.54381 * 105.14978 * 359.94367 * 10 9 7 12 12 N 1.48567 * 110.41197 * 61.63027 * 7 6 5 13 13 C 1.46900 * 110.99718 * 82.17691 * 12 7 6 14 14 C 1.50707 * 109.46999 * 189.99963 * 13 12 7 15 15 H 1.07999 * 119.99588 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00088 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47195 * 59.99919 * 18 16 14 20 20 H 1.48497 * 109.47202 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47030 * 300.00183 * 18 16 14 22 22 H 1.08995 * 109.47417 * 300.00136 * 1 2 3 23 23 H 1.09001 * 109.46951 * 60.00424 * 1 2 3 24 24 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47008 * 179.97438 * 3 2 1 26 26 H 1.09008 * 109.47605 * 299.99720 * 3 2 1 27 27 H 1.09000 * 109.47860 * 59.99516 * 3 2 1 28 28 H 1.09004 * 109.47159 * 300.00214 * 4 2 1 29 29 H 1.09001 * 109.47350 * 59.99971 * 4 2 1 30 30 H 1.08994 * 109.47445 * 180.02562 * 4 2 1 31 31 H 1.08989 * 109.46981 * 60.00539 * 6 5 2 32 32 H 1.08997 * 109.47450 * 299.99352 * 6 5 2 33 33 H 1.08995 * 110.32829 * 23.73095 * 9 7 6 34 34 H 1.09009 * 110.32090 * 261.52813 * 9 7 6 35 35 H 1.09002 * 110.32715 * 118.89422 * 10 9 7 36 36 H 1.08998 * 110.32251 * 240.99949 * 10 9 7 37 37 H 1.09004 * 110.40867 * 94.98012 * 11 10 9 38 38 H 1.08996 * 110.41187 * 217.42234 * 11 10 9 39 39 H 1.08997 * 109.47620 * 310.00301 * 13 12 7 40 40 H 1.08999 * 109.47148 * 70.00734 * 13 12 7 41 41 H 0.97003 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 2.1504 -2.6539 2.5445 8 1 1.8981 -3.7130 2.5978 9 6 3.6810 -2.4612 2.6046 10 6 3.9929 -2.1907 4.0909 11 6 2.6254 -2.2407 4.8057 12 7 1.6356 -1.9354 3.7386 13 6 0.2979 -2.4180 4.1071 14 6 -0.2917 -1.5114 5.1566 15 1 0.2708 -0.6614 5.5138 16 6 -1.5497 -1.7663 5.6600 17 7 -2.2349 -2.8010 5.2247 18 14 -2.2808 -0.6421 6.9604 19 1 -2.3831 0.7378 6.4210 20 1 -3.6329 -1.1299 7.3330 21 1 -1.4073 -0.6406 8.1613 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2489 31 1 1.9491 -2.5915 0.4009 32 1 0.4957 -2.0777 1.2908 33 1 3.9796 -1.6093 1.9939 34 1 4.1898 -3.3652 2.2695 35 1 4.6547 -2.9617 4.4854 36 1 4.4462 -1.2066 4.2095 37 1 2.4472 -3.2347 5.2161 38 1 2.5809 -1.4894 5.5941 39 1 -0.3436 -2.4191 3.2259 40 1 0.3733 -3.4308 4.5029 41 1 -3.1201 -2.9802 5.5787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932162302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:25 Heat of formation + Delta-G solvation = -54.832633 kcal Electronic energy + Delta-G solvation = -18609.257599 eV Core-core repulsion = 15909.773052 eV Total energy + Delta-G solvation = -2699.484547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.02241 -37.60888 -33.25028 -32.87671 -30.80760 -29.53753 -27.30061 -27.17047 -26.23466 -24.36973 -22.25068 -20.09481 -19.99713 -18.93648 -16.41108 -16.11674 -15.23769 -15.00417 -14.89249 -14.21334 -13.88909 -13.72198 -13.26227 -12.86878 -12.69915 -12.35964 -12.00576 -11.88380 -11.69231 -11.57248 -11.52662 -11.36095 -11.01092 -10.87639 -10.68262 -10.57826 -10.48598 -10.25727 -9.97424 -9.88972 -9.71391 -9.14221 -8.95698 -8.36799 -7.24941 -5.97290 -3.97439 3.37206 3.40390 3.44358 4.09420 4.47582 4.92386 5.03223 5.07356 5.24317 5.29514 5.37681 5.40929 5.57169 5.63328 5.71703 5.80541 5.87059 5.88087 5.91088 5.94346 6.02216 6.06161 6.14826 6.19995 6.27988 6.35815 6.45341 6.47421 6.59453 6.64014 6.75490 6.81298 7.24461 7.35334 7.77496 7.89165 8.08587 8.27213 8.60862 9.10594 9.66322 11.13801 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.007479 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.890989 B = 3742.994823 C = 4509.938843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 C -0.134 4.134 4 C -0.176 4.176 5 O -0.351 6.351 6 C 0.079 3.921 7 C 0.058 3.942 8 H 0.051 0.949 9 C -0.114 4.114 10 C -0.123 4.123 11 C 0.046 3.954 12 N -0.490 5.490 13 C 0.183 3.817 14 C -0.499 4.499 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.902 5.902 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.277 1.277 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.027 0.973 40 H -0.009 1.009 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 2.611 -10.602 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.065 3.935 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.270 6.270 6 C 0.002 3.998 7 C -0.051 4.051 8 H 0.069 0.931 9 C -0.152 4.152 10 C -0.161 4.161 11 C -0.082 4.082 12 N -0.214 5.214 13 C 0.057 3.943 14 C -0.538 4.538 15 H 0.080 0.920 16 C -0.147 4.147 17 N -0.542 5.542 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.008 0.992 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.280 3.184 -10.530 14.392 hybrid contribution -0.812 -0.608 0.666 1.213 sum 8.468 2.577 -9.864 13.253 Atomic orbital electron populations 1.22402 0.95877 1.02626 1.02486 1.21400 0.93223 0.93094 0.85816 1.21699 1.01382 0.93874 1.02141 1.22431 1.01722 1.01052 0.98178 1.88072 1.73393 1.23891 1.41613 1.22340 0.98819 0.82861 0.95755 1.22633 0.94462 0.95332 0.92681 0.93081 1.22225 0.94933 1.00981 0.97068 1.22295 0.97554 1.00911 0.95386 1.22926 0.90581 0.99327 0.95417 1.65462 1.03226 1.51754 1.00999 1.19881 0.84299 0.93887 0.96218 1.21098 1.00614 1.11332 1.20759 0.91994 1.24980 0.97053 0.95527 0.97140 1.69953 1.12458 1.28025 1.43773 0.86575 0.78014 0.81016 0.81885 1.20201 1.21433 1.20316 0.91120 0.92462 0.92286 0.92277 0.91879 0.91597 0.92382 0.92127 0.92121 0.94191 0.92806 0.90463 0.92857 0.92659 0.91762 0.94921 0.90652 0.95453 0.99167 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 8.25 37.16 0.31 -2.27 16 2 C 0.10 1.49 1.14 -90.62 -0.10 1.39 16 3 C -0.13 -1.68 8.84 37.15 0.33 -1.35 16 4 C -0.18 -2.07 8.25 37.15 0.31 -1.76 16 5 O -0.35 -6.20 8.77 -35.23 -0.31 -6.51 16 6 C 0.08 1.39 4.94 37.16 0.18 1.57 16 7 C 0.06 1.10 2.68 -66.07 -0.18 0.92 16 8 H 0.05 0.98 8.00 -51.93 -0.42 0.56 16 9 C -0.11 -1.83 6.45 -25.35 -0.16 -1.99 16 10 C -0.12 -2.01 6.99 -25.35 -0.18 -2.19 16 11 C 0.05 0.93 6.13 -2.09 -0.01 0.92 16 12 N -0.49 -11.10 4.93 -223.42 -1.10 -12.20 16 13 C 0.18 4.90 4.54 -4.97 -0.02 4.88 16 14 C -0.50 -14.48 8.97 -34.44 -0.31 -14.79 16 15 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 18 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.89 6.54 -51.93 -0.34 0.55 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.68 6.54 -51.93 -0.34 0.35 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.60 6.42 -51.94 -0.33 0.26 16 32 H 0.05 1.04 5.52 -51.93 -0.29 0.75 16 33 H 0.08 1.25 7.00 -51.93 -0.36 0.89 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.68 7.75 -51.93 -0.40 0.28 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.03 0.78 7.14 -51.93 -0.37 0.41 16 40 H -0.01 -0.27 7.77 -51.93 -0.40 -0.67 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -30.76 318.86 -8.28 -39.04 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.45 Total: -2.57 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 0.06 Total: -13.22 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.36 Total: -38.71 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.31 Total: -6.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.76 -8.28 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.796 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds