Wall clock time and date at job start Sun Mar 29 2020 22:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46875 * 2 1 4 4 C 1.52992 * 109.47283 * 239.99848 * 2 1 3 5 5 O 1.42899 * 109.46761 * 119.99913 * 2 1 3 6 6 C 1.42898 * 113.99888 * 59.99958 * 5 2 1 7 7 C 1.53006 * 109.46622 * 179.97438 * 6 5 2 8 8 H 1.09004 * 110.36463 * 184.10160 * 7 6 5 9 9 C 1.54377 * 110.41410 * 306.45940 * 7 6 5 10 10 C 1.54257 * 105.06382 * 142.63460 * 9 7 6 11 11 C 1.54381 * 105.14978 * 359.94367 * 10 9 7 12 12 N 1.48567 * 110.41197 * 61.63027 * 7 6 5 13 13 C 1.46900 * 110.99718 * 82.17691 * 12 7 6 14 14 C 1.50707 * 109.46999 * 189.99963 * 13 12 7 15 15 H 1.07999 * 119.99588 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00088 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47195 * 59.99919 * 18 16 14 20 20 H 1.48497 * 109.47202 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47030 * 300.00183 * 18 16 14 22 22 H 1.08995 * 109.47417 * 300.00136 * 1 2 3 23 23 H 1.09001 * 109.46951 * 60.00424 * 1 2 3 24 24 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47008 * 179.97438 * 3 2 1 26 26 H 1.09008 * 109.47605 * 299.99720 * 3 2 1 27 27 H 1.09000 * 109.47860 * 59.99516 * 3 2 1 28 28 H 1.09004 * 109.47159 * 300.00214 * 4 2 1 29 29 H 1.09001 * 109.47350 * 59.99971 * 4 2 1 30 30 H 1.08994 * 109.47445 * 180.02562 * 4 2 1 31 31 H 1.08989 * 109.46981 * 60.00539 * 6 5 2 32 32 H 1.08997 * 109.47450 * 299.99352 * 6 5 2 33 33 H 1.08995 * 110.32829 * 23.73095 * 9 7 6 34 34 H 1.09009 * 110.32090 * 261.52813 * 9 7 6 35 35 H 1.09002 * 110.32715 * 118.89422 * 10 9 7 36 36 H 1.08998 * 110.32251 * 240.99949 * 10 9 7 37 37 H 1.09004 * 110.40867 * 94.98012 * 11 10 9 38 38 H 1.08996 * 110.41187 * 217.42234 * 11 10 9 39 39 H 1.08997 * 109.47620 * 310.00301 * 13 12 7 40 40 H 1.08999 * 109.47148 * 70.00734 * 13 12 7 41 41 H 0.97003 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 2.1504 -2.6539 2.5445 8 1 1.8981 -3.7130 2.5978 9 6 3.6810 -2.4612 2.6046 10 6 3.9929 -2.1907 4.0909 11 6 2.6254 -2.2407 4.8057 12 7 1.6356 -1.9354 3.7386 13 6 0.2979 -2.4180 4.1071 14 6 -0.2917 -1.5114 5.1566 15 1 0.2708 -0.6614 5.5138 16 6 -1.5497 -1.7663 5.6600 17 7 -2.2349 -2.8010 5.2247 18 14 -2.2808 -0.6421 6.9604 19 1 -2.3831 0.7378 6.4210 20 1 -3.6329 -1.1299 7.3330 21 1 -1.4073 -0.6406 8.1613 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2489 31 1 1.9491 -2.5915 0.4009 32 1 0.4957 -2.0777 1.2908 33 1 3.9796 -1.6093 1.9939 34 1 4.1898 -3.3652 2.2695 35 1 4.6547 -2.9617 4.4854 36 1 4.4462 -1.2066 4.2095 37 1 2.4472 -3.2347 5.2161 38 1 2.5809 -1.4894 5.5941 39 1 -0.3436 -2.4191 3.2259 40 1 0.3733 -3.4308 4.5029 41 1 -3.1201 -2.9802 5.5787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932162302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:24 Heat of formation + Delta-G solvation = -74.736935 kcal Electronic energy + Delta-G solvation = -18610.120714 eV Core-core repulsion = 15909.773052 eV Total energy + Delta-G solvation = -2700.347662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41273 -39.04383 -35.21471 -34.27734 -32.62762 -30.98469 -28.34869 -28.31166 -28.22235 -25.83091 -24.24019 -21.63279 -21.35277 -20.33623 -18.45863 -17.53930 -16.90680 -16.57019 -16.20468 -15.98684 -15.23943 -15.07903 -14.62944 -14.55022 -14.13399 -14.02122 -13.53277 -13.28232 -12.95118 -12.93284 -12.78762 -12.63278 -12.60088 -12.46874 -12.30405 -12.15523 -11.94728 -11.84024 -11.76033 -11.28398 -11.26548 -11.13348 -10.61980 -10.25599 -9.09427 -8.22198 -6.32025 1.37242 1.41057 1.49073 2.38391 2.86168 3.09480 3.35259 3.79924 3.91645 4.00447 4.03734 4.19505 4.22685 4.41764 4.44625 4.51044 4.56606 4.67867 4.72203 4.82657 4.86258 4.92022 4.93663 4.98878 4.99957 5.04503 5.07936 5.12504 5.18556 5.23443 5.36209 5.42599 5.44890 5.48442 5.64482 6.03395 6.30383 6.48982 6.64480 6.83503 7.37513 8.88778 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.007479 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.890989 B = 3742.994823 C = 4509.938843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 C -0.130 4.130 4 C -0.169 4.169 5 O -0.372 6.372 6 C 0.087 3.913 7 C 0.048 3.952 8 H 0.045 0.955 9 C -0.103 4.103 10 C -0.112 4.112 11 C 0.040 3.960 12 N -0.504 5.504 13 C 0.203 3.797 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.267 1.267 22 H 0.038 0.962 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.061 0.939 39 H -0.001 1.001 40 H -0.039 1.039 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 3.453 -11.503 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.226 4.226 5 O -0.292 6.292 6 C 0.010 3.990 7 C -0.061 4.061 8 H 0.063 0.937 9 C -0.141 4.141 10 C -0.150 4.150 11 C -0.088 4.088 12 N -0.228 5.228 13 C 0.076 3.924 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.192 1.192 22 H 0.057 0.943 23 H 0.104 0.896 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.017 0.983 40 H -0.021 1.021 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.825 4.030 -11.441 16.258 hybrid contribution -1.296 -0.872 0.901 1.803 sum 9.529 3.158 -10.540 14.556 Atomic orbital electron populations 1.22392 0.96753 1.01703 1.02306 1.21729 0.92716 0.94180 0.86001 1.21714 1.01855 0.92640 1.02515 1.22351 1.02197 1.00682 0.97358 1.88026 1.73553 1.23861 1.43773 1.22202 0.96969 0.83653 0.96178 1.22829 0.96862 0.94741 0.91627 0.93720 1.22196 0.92294 1.02639 0.96943 1.22256 0.95159 1.02573 0.94996 1.22981 0.92628 0.98101 0.95115 1.65374 1.01921 1.52442 1.03105 1.19469 0.86524 0.92059 0.94314 1.21382 1.01305 1.11588 1.21695 0.92606 1.25903 0.97327 0.97032 0.99322 1.70078 1.12872 1.29585 1.44980 0.85460 0.77434 0.78860 0.79024 1.19523 1.20447 1.19196 0.94263 0.89567 0.93613 0.91486 0.89109 0.93637 0.92721 0.89872 0.91247 0.91119 0.95879 0.90103 0.89750 0.89730 0.90873 0.96085 0.92055 0.98285 1.02149 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 8.25 71.98 0.59 -4.52 16 2 C 0.09 2.54 1.14 -10.80 -0.01 2.53 16 3 C -0.13 -3.05 8.84 71.98 0.64 -2.41 16 4 C -0.17 -3.50 8.25 71.98 0.59 -2.90 16 5 O -0.37 -13.04 8.77 -148.98 -1.31 -14.34 16 6 C 0.09 3.06 4.94 71.98 0.36 3.42 16 7 C 0.05 1.83 2.68 45.06 0.12 1.95 16 8 H 0.04 1.74 8.00 -2.39 -0.02 1.72 16 9 C -0.10 -3.06 6.45 31.49 0.20 -2.85 16 10 C -0.11 -3.41 6.99 31.49 0.22 -3.19 16 11 C 0.04 1.65 6.13 86.42 0.53 2.18 16 12 N -0.50 -23.56 4.93 -860.76 -4.24 -27.80 16 13 C 0.20 11.50 4.54 85.56 0.39 11.89 16 14 C -0.52 -31.36 8.97 25.60 0.23 -31.14 16 15 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 18 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.04 1.43 6.54 -2.38 -0.02 1.42 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.16 6.54 -2.38 -0.02 1.15 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 2.02 6.42 -2.39 -0.02 2.01 16 32 H 0.02 0.94 5.52 -2.39 -0.01 0.93 16 33 H 0.08 2.38 7.00 -2.39 -0.02 2.37 16 34 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.02 0.90 7.75 -2.38 -0.02 0.88 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.62 16 39 H 0.00 -0.06 7.14 -2.39 -0.02 -0.07 16 40 H -0.04 -2.38 7.77 -2.39 -0.02 -2.40 16 41 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -68.80 318.86 2.05 -66.75 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.96 Total: 9.52 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.32 Total: -24.47 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -3.96 Total: -85.55 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.31 Total: -14.34 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -68.80 2.05 -66.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.984 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds