Wall clock time and date at job start Sun Mar 29 2020 22:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 C 1.53005 * 109.46998 * 240.00142 * 2 1 3 5 5 O 1.42898 * 109.47050 * 120.00483 * 2 1 3 6 6 C 1.42899 * 114.00508 * 59.99670 * 5 2 1 7 7 C 1.52999 * 109.47487 * 180.02562 * 6 5 2 8 8 H 1.08994 * 110.46295 * 172.58607 * 7 6 5 9 9 C 1.54388 * 110.40881 * 50.17315 * 7 6 5 10 10 C 1.54264 * 105.05862 * 217.36888 * 9 7 6 11 11 C 1.54377 * 105.05893 * 0.02562 * 10 9 7 12 12 N 1.48558 * 110.41075 * 295.00066 * 7 6 5 13 13 C 1.46892 * 111.00224 * 277.81848 * 12 7 6 14 14 C 1.50696 * 109.47376 * 170.00343 * 13 12 7 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 H 1.08996 * 109.47212 * 300.00117 * 1 2 3 23 23 H 1.09005 * 109.46908 * 59.99621 * 1 2 3 24 24 H 1.08999 * 109.47260 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46978 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.46968 * 299.99852 * 3 2 1 27 27 H 1.09000 * 109.46803 * 60.00214 * 3 2 1 28 28 H 1.09003 * 109.46874 * 299.99722 * 4 2 1 29 29 H 1.08995 * 109.47050 * 60.00289 * 4 2 1 30 30 H 1.08998 * 109.47067 * 180.02562 * 4 2 1 31 31 H 1.09005 * 109.46944 * 59.99775 * 6 5 2 32 32 H 1.09000 * 109.46643 * 300.00306 * 6 5 2 33 33 H 1.08991 * 110.32314 * 336.26153 * 9 7 6 34 34 H 1.08999 * 110.31929 * 98.47680 * 9 7 6 35 35 H 1.08996 * 110.32263 * 118.89640 * 10 9 7 36 36 H 1.09001 * 110.31974 * 241.00312 * 10 9 7 37 37 H 1.09009 * 110.41285 * 265.07361 * 11 10 9 38 38 H 1.09005 * 110.41183 * 142.63378 * 11 10 9 39 39 H 1.09004 * 109.47048 * 49.99675 * 13 12 7 40 40 H 1.09010 * 109.47057 * 290.00142 * 13 12 7 41 41 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2644 7 6 2.1495 -2.6538 2.5449 8 1 1.7334 -3.6486 2.7034 9 6 1.8517 -1.7461 3.7578 10 6 3.1066 -1.8444 4.6496 11 6 4.0572 -2.8026 3.9002 12 7 3.6323 -2.7167 2.4795 13 6 4.0764 -3.8960 1.7247 14 6 5.5582 -3.7996 1.4683 15 1 6.1145 -2.9473 1.8295 16 6 6.2038 -4.7991 0.7716 17 7 5.5264 -5.8369 0.3312 18 14 8.0405 -4.6793 0.4531 19 1 8.2749 -3.9733 -0.8322 20 1 8.6862 -3.9247 1.5571 21 1 8.6205 -6.0444 0.3810 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7217 -1.2491 31 1 1.9491 -2.5916 0.4006 32 1 0.4958 -2.0777 1.2907 33 1 1.6984 -0.7174 3.4321 34 1 0.9757 -2.1085 4.2957 35 1 3.5691 -0.8638 4.7616 36 1 2.8461 -2.2532 5.6259 37 1 3.9398 -3.8211 4.2705 38 1 5.0910 -2.4744 4.0088 39 1 3.5451 -3.9401 0.7739 40 1 3.8652 -4.7970 2.3010 41 1 4.5727 -5.8992 0.4970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932170074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:27 Heat of formation + Delta-G solvation = -58.448299 kcal Electronic energy + Delta-G solvation = -18636.082737 eV Core-core repulsion = 15936.441403 eV Total energy + Delta-G solvation = -2699.641334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.12412 -37.72403 -33.49050 -33.04380 -30.76007 -29.61304 -27.35992 -27.23214 -25.78129 -24.41306 -22.41058 -20.21315 -20.12733 -19.04878 -16.81258 -16.28012 -15.41480 -14.99158 -14.87808 -14.01738 -13.89147 -13.65386 -13.32381 -13.08229 -12.84282 -12.50216 -12.16711 -11.91225 -11.88557 -11.61354 -11.53161 -11.22749 -11.06221 -10.88658 -10.68842 -10.60899 -10.49848 -10.26970 -10.06086 -9.99457 -9.92983 -9.05152 -8.62015 -8.31801 -7.36414 -6.32288 -3.99732 3.47166 3.50712 3.66867 4.01115 4.55783 4.82160 4.96520 5.00952 5.17827 5.20815 5.31798 5.43105 5.49343 5.57503 5.65389 5.74046 5.79007 5.80198 5.82242 5.87764 5.95260 5.98457 6.07642 6.13673 6.20683 6.27245 6.36819 6.40955 6.52395 6.55308 6.65525 6.73924 6.98831 7.07914 7.67306 7.82193 8.03957 8.33315 8.66704 8.92757 9.70533 11.06909 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.007407 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.812863 B = 3779.092012 C = 4526.072846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.352 6.352 6 C 0.080 3.920 7 C 0.056 3.944 8 H 0.050 0.950 9 C -0.114 4.114 10 C -0.123 4.123 11 C 0.047 3.953 12 N -0.484 5.484 13 C 0.172 3.828 14 C -0.580 4.580 15 H 0.057 0.943 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 1.074 2.926 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.286 1.286 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.017 0.983 40 H -0.020 1.020 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 10.808 1.995 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.065 3.935 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.271 6.271 6 C 0.003 3.997 7 C -0.053 4.053 8 H 0.068 0.932 9 C -0.152 4.152 10 C -0.161 4.161 11 C -0.081 4.081 12 N -0.208 5.208 13 C 0.046 3.954 14 C -0.618 4.618 15 H 0.075 0.925 16 C -0.191 4.191 17 N -0.555 5.555 18 Si 0.903 3.097 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.211 1.211 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.035 0.965 40 H -0.002 1.002 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.459 10.575 1.145 13.590 hybrid contribution -1.864 -0.268 0.796 2.045 sum -10.323 10.307 1.941 14.716 Atomic orbital electron populations 1.22432 0.96618 1.02188 1.02155 1.21416 0.92303 0.93271 0.86531 1.21703 1.02296 0.93506 1.01603 1.22402 1.02992 1.00734 0.97265 1.88054 1.74322 1.23452 1.41318 1.22320 0.95998 0.83428 0.97988 1.22666 0.92315 0.96487 0.93849 0.93210 1.22219 0.96863 1.01028 0.95071 1.22298 0.96164 1.00133 0.97542 1.22888 0.99372 0.96771 0.89088 1.65361 1.04255 1.41570 1.09631 1.20000 0.97325 0.85635 0.92437 1.21963 0.92663 1.08573 1.38643 0.92518 1.25844 1.06725 0.92678 0.93854 1.70775 1.09974 1.29941 1.44787 0.83464 0.74246 0.75766 0.76228 1.21485 1.21454 1.21149 0.92073 0.92039 0.92404 0.91601 0.91778 0.92240 0.92362 0.92329 0.91159 0.92887 0.94077 0.90209 0.92773 0.91637 0.92524 0.95032 0.90515 0.96464 1.00230 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.25 37.16 0.31 -1.75 16 2 C 0.10 1.48 1.14 -90.62 -0.10 1.37 16 3 C -0.13 -1.66 8.84 37.16 0.33 -1.33 16 4 C -0.18 -2.56 8.25 37.16 0.31 -2.26 16 5 O -0.35 -6.19 8.65 -35.23 -0.30 -6.49 16 6 C 0.08 1.39 5.00 37.16 0.19 1.58 16 7 C 0.06 1.06 2.69 -66.07 -0.18 0.88 16 8 H 0.05 0.95 8.00 -51.93 -0.42 0.53 16 9 C -0.11 -1.83 6.45 -25.34 -0.16 -1.99 16 10 C -0.12 -2.02 7.00 -25.35 -0.18 -2.19 16 11 C 0.05 0.97 6.12 -2.20 -0.01 0.96 16 12 N -0.48 -11.04 4.98 -223.59 -1.11 -12.16 16 13 C 0.17 4.61 3.85 -4.98 -0.02 4.59 16 14 C -0.58 -17.01 8.97 -34.44 -0.31 -17.32 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 17 N -0.92 -28.47 13.65 55.43 0.76 -27.71 16 18 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.88 6.54 -51.93 -0.34 0.54 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.03 5.46 -51.93 -0.28 0.74 16 32 H 0.04 0.61 6.42 -51.93 -0.33 0.28 16 33 H 0.08 1.30 6.86 -51.93 -0.36 0.94 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.66 7.75 -51.92 -0.40 0.26 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.02 0.49 6.97 -51.93 -0.36 0.12 16 40 H -0.02 -0.56 7.63 -51.92 -0.40 -0.95 16 41 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -31.65 317.29 -8.27 -39.92 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.38 Total: -2.12 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 0.07 Total: -17.21 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.36 Total: -39.87 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.30 Total: -6.49 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.65 -8.27 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932170074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.524 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds