Wall clock time and date at job start Sun Mar 29 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 C 1.53002 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47213 * 177.02664 * 4 3 2 6 6 N 1.46899 * 115.55475 * 303.31512 * 5 4 3 7 7 C 1.46899 * 111.00730 * 185.40658 * 6 5 4 8 8 C 1.52995 * 109.47661 * 184.16321 * 7 6 5 9 9 O 1.42903 * 109.46809 * 64.99968 * 8 7 6 10 10 C 1.42903 * 113.99833 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47479 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00382 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00023 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00097 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46900 * 89.99892 * 15 13 11 17 17 H 1.48494 * 109.47392 * 209.99973 * 15 13 11 18 18 H 1.48497 * 109.47104 * 330.00421 * 15 13 11 19 19 C 1.53001 * 117.49918 * 88.98720 * 5 4 3 20 20 C 1.52999 * 117.50069 * 157.64656 * 5 4 3 21 21 H 1.08993 * 109.47408 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47428 * 300.00500 * 1 2 3 23 23 H 1.09007 * 109.47326 * 59.99880 * 1 2 3 24 24 H 1.08998 * 109.46881 * 239.99920 * 2 1 3 25 25 H 1.08998 * 109.46838 * 119.99809 * 2 1 3 26 26 H 1.08996 * 109.47648 * 59.99761 * 3 2 1 27 27 H 1.09007 * 109.47226 * 299.99656 * 3 2 1 28 28 H 1.09006 * 109.47043 * 57.02640 * 4 3 2 29 29 H 1.08994 * 109.47356 * 297.03094 * 4 3 2 30 30 H 1.00903 * 111.00017 * 309.36477 * 6 5 4 31 31 H 1.08999 * 109.46682 * 64.15772 * 7 6 5 32 32 H 1.09001 * 109.46871 * 304.16885 * 7 6 5 33 33 H 1.08998 * 109.47045 * 305.00325 * 8 7 6 34 34 H 1.08992 * 109.47357 * 184.99951 * 8 7 6 35 35 H 1.09007 * 109.47025 * 299.99818 * 10 9 8 36 36 H 1.09000 * 109.47570 * 59.99833 * 10 9 8 37 37 H 0.97001 * 119.99980 * 179.97438 * 14 13 11 38 38 H 1.09003 * 117.50077 * 214.99864 * 19 5 4 39 39 H 1.09006 * 117.49604 * 0.02562 * 19 5 4 40 40 H 1.09004 * 117.49739 * 359.97438 * 20 5 4 41 41 H 1.09006 * 117.50415 * 144.97209 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8830 -0.0755 6 7 3.6045 3.6647 -1.2247 7 6 4.2515 4.9827 -1.2691 8 6 3.6571 5.8045 -2.4145 9 8 2.2787 6.0689 -2.1457 10 6 1.6251 6.8343 -3.1602 11 6 0.1844 7.0518 -2.7755 12 1 -0.1942 6.6464 -1.8488 13 6 -0.6502 7.7691 -3.6061 14 7 -1.9074 7.9593 -3.2702 15 14 0.0047 8.4709 -5.2086 16 1 -0.1774 7.4758 -6.2957 17 1 -0.7367 9.7127 -5.5449 18 1 1.4491 8.7818 -5.0592 19 6 4.2934 3.6263 1.2447 20 6 5.4990 3.1570 0.4266 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9330 0.8833 -0.8631 29 1 3.9337 0.9753 0.9145 30 1 3.7478 3.1623 -2.0880 31 1 5.3222 4.8566 -1.4298 32 1 4.0845 5.5013 -0.3250 33 1 3.7448 5.2457 -3.3462 34 1 4.1971 6.7470 -2.5039 35 1 2.1229 7.7983 -3.2654 36 1 1.6707 6.2966 -4.1072 37 1 -2.4944 8.4643 -3.8543 38 1 4.0810 4.6953 1.2605 39 1 4.0709 3.0889 2.1666 40 1 6.0692 2.3111 0.8106 41 1 6.0800 3.9170 -0.0962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934203895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:28 Heat of formation + Delta-G solvation = -38.545128 kcal Electronic energy + Delta-G solvation = -17457.879316 eV Core-core repulsion = 14759.101048 eV Total energy + Delta-G solvation = -2698.778268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.17261 -36.82310 -35.11626 -33.08376 -32.31094 -30.06912 -28.60014 -26.95808 -24.26613 -22.52813 -21.82298 -21.60641 -20.87501 -19.27478 -16.88656 -16.25981 -15.84283 -15.39194 -15.16586 -14.48243 -14.32743 -14.04743 -13.71235 -13.20024 -12.93751 -12.77944 -12.62462 -12.32440 -11.95775 -11.72057 -11.40300 -11.26652 -11.17877 -10.94917 -10.84665 -10.69833 -10.51274 -10.45561 -10.17148 -10.06779 -9.82064 -9.11769 -8.78743 -8.40427 -7.98569 -6.06641 -4.04847 3.27268 3.34009 3.35555 3.77501 4.14828 4.39329 4.60651 4.67348 4.78891 4.90106 5.09238 5.15374 5.24510 5.25046 5.46025 5.47951 5.53039 5.63004 5.64544 5.73575 5.82762 5.85090 5.92356 5.93437 5.98343 6.02683 6.08769 6.14208 6.25435 6.28207 6.42375 6.62513 6.65076 7.04925 7.17321 7.52662 7.65535 8.10413 8.73921 9.06869 9.53164 11.06574 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.005219 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.028093 B = 5363.535658 C = 6394.570279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.114 4.114 4 C -0.072 4.072 5 C 0.062 3.938 6 N -0.632 5.632 7 C 0.058 3.942 8 C 0.062 3.938 9 O -0.364 6.364 10 C 0.167 3.833 11 C -0.514 4.514 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.876 3.124 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.170 4.170 20 C -0.230 4.230 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.342 0.658 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.041 0.959 35 H -0.001 1.001 36 H -0.004 1.004 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 -13.213 5.458 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.030 4.030 6 N -0.261 5.261 7 C -0.071 4.071 8 C -0.016 4.016 9 O -0.283 6.283 10 C 0.092 3.908 11 C -0.552 4.552 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.208 4.208 20 C -0.270 4.270 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.017 0.983 36 H 0.014 0.986 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.935 -12.943 5.857 19.213 hybrid contribution 1.335 0.409 -1.411 1.985 sum 14.270 -12.534 4.446 19.506 Atomic orbital electron populations 1.21771 0.95855 1.01060 1.02408 1.21544 0.96052 0.97353 1.01151 1.21502 0.93931 0.95837 1.03871 1.21049 0.96670 0.91768 1.01495 1.21694 0.94352 0.94340 0.92648 1.60054 1.58867 1.02717 1.04438 1.22134 0.94444 0.90008 1.00494 1.22299 0.86314 0.96911 0.96112 1.88028 1.19562 1.74207 1.46471 1.20588 0.93887 0.89285 0.87050 1.20899 0.91616 1.34090 1.08609 0.89908 1.24765 0.94669 0.95725 0.97849 1.69880 1.04824 1.40994 1.37838 0.86858 0.79473 0.79122 0.84313 1.19988 1.20846 1.19211 1.23172 1.01362 1.01363 0.94878 1.23661 0.92828 1.04099 1.06432 0.93287 0.92737 0.92281 0.92464 0.92769 0.91938 0.90175 0.91924 0.91748 0.83854 0.94311 0.89867 0.94621 0.94067 0.98289 0.98598 0.92454 0.88304 0.88761 0.89199 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.11 -1.37 5.12 -26.73 -0.14 -1.51 16 4 C -0.07 -0.77 5.28 -26.73 -0.14 -0.91 16 5 C 0.06 0.76 2.65 -131.61 -0.35 0.41 16 6 N -0.63 -9.14 6.10 -99.97 -0.61 -9.75 16 7 C 0.06 0.85 5.08 -3.83 -0.02 0.83 16 8 C 0.06 1.09 6.25 37.15 0.23 1.33 16 9 O -0.36 -8.68 10.27 -35.23 -0.36 -9.04 16 10 C 0.17 4.35 4.76 36.00 0.17 4.52 16 11 C -0.51 -15.63 9.99 -34.44 -0.34 -15.97 16 12 H 0.08 2.77 8.06 -52.48 -0.42 2.34 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 15 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 19 C -0.17 -2.03 9.59 -26.69 -0.26 -2.29 16 20 C -0.23 -2.46 9.52 -26.69 -0.25 -2.71 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.16 7.75 -51.92 -0.40 0.76 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.34 4.55 8.84 -39.29 -0.35 4.21 16 31 H 0.04 0.47 6.49 -51.93 -0.34 0.13 16 32 H 0.08 1.29 6.07 -51.93 -0.32 0.97 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 36 H 0.00 -0.09 7.57 -51.93 -0.39 -0.49 16 37 H 0.27 7.69 8.31 -40.82 -0.34 7.36 16 38 H 0.10 1.30 6.33 -51.93 -0.33 0.97 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.99 6.16 -51.93 -0.32 0.67 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -31.94 328.57 -8.38 -40.32 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.48 Total: 0.76 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.98 Total: -16.99 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.16 Total: -37.06 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.36 Total: -9.04 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.94 -8.38 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934203895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.771 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds