Wall clock time and date at job start Sun Mar 29 2020 22:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 C 1.53002 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47213 * 177.02664 * 4 3 2 6 6 N 1.46899 * 115.55475 * 303.31512 * 5 4 3 7 7 C 1.46899 * 111.00730 * 185.40658 * 6 5 4 8 8 C 1.52995 * 109.47661 * 184.16321 * 7 6 5 9 9 O 1.42903 * 109.46809 * 64.99968 * 8 7 6 10 10 C 1.42903 * 113.99833 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47479 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00382 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00023 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00097 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46900 * 89.99892 * 15 13 11 17 17 H 1.48494 * 109.47392 * 209.99973 * 15 13 11 18 18 H 1.48497 * 109.47104 * 330.00421 * 15 13 11 19 19 C 1.53001 * 117.49918 * 88.98720 * 5 4 3 20 20 C 1.52999 * 117.50069 * 157.64656 * 5 4 3 21 21 H 1.08993 * 109.47408 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47428 * 300.00500 * 1 2 3 23 23 H 1.09007 * 109.47326 * 59.99880 * 1 2 3 24 24 H 1.08998 * 109.46881 * 239.99920 * 2 1 3 25 25 H 1.08998 * 109.46838 * 119.99809 * 2 1 3 26 26 H 1.08996 * 109.47648 * 59.99761 * 3 2 1 27 27 H 1.09007 * 109.47226 * 299.99656 * 3 2 1 28 28 H 1.09006 * 109.47043 * 57.02640 * 4 3 2 29 29 H 1.08994 * 109.47356 * 297.03094 * 4 3 2 30 30 H 1.00903 * 111.00017 * 309.36477 * 6 5 4 31 31 H 1.08999 * 109.46682 * 64.15772 * 7 6 5 32 32 H 1.09001 * 109.46871 * 304.16885 * 7 6 5 33 33 H 1.08998 * 109.47045 * 305.00325 * 8 7 6 34 34 H 1.08992 * 109.47357 * 184.99951 * 8 7 6 35 35 H 1.09007 * 109.47025 * 299.99818 * 10 9 8 36 36 H 1.09000 * 109.47570 * 59.99833 * 10 9 8 37 37 H 0.97001 * 119.99980 * 179.97438 * 14 13 11 38 38 H 1.09003 * 117.50077 * 214.99864 * 19 5 4 39 39 H 1.09006 * 117.49604 * 0.02562 * 19 5 4 40 40 H 1.09004 * 117.49739 * 359.97438 * 20 5 4 41 41 H 1.09006 * 117.50415 * 144.97209 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8830 -0.0755 6 7 3.6045 3.6647 -1.2247 7 6 4.2515 4.9827 -1.2691 8 6 3.6571 5.8045 -2.4145 9 8 2.2787 6.0689 -2.1457 10 6 1.6251 6.8343 -3.1602 11 6 0.1844 7.0518 -2.7755 12 1 -0.1942 6.6464 -1.8488 13 6 -0.6502 7.7691 -3.6061 14 7 -1.9074 7.9593 -3.2702 15 14 0.0047 8.4709 -5.2086 16 1 -0.1774 7.4758 -6.2957 17 1 -0.7367 9.7127 -5.5449 18 1 1.4491 8.7818 -5.0592 19 6 4.2934 3.6263 1.2447 20 6 5.4990 3.1570 0.4266 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9330 0.8833 -0.8631 29 1 3.9337 0.9753 0.9145 30 1 3.7478 3.1623 -2.0880 31 1 5.3222 4.8566 -1.4298 32 1 4.0845 5.5013 -0.3250 33 1 3.7448 5.2457 -3.3462 34 1 4.1971 6.7470 -2.5039 35 1 2.1229 7.7983 -3.2654 36 1 1.6707 6.2966 -4.1072 37 1 -2.4944 8.4643 -3.8543 38 1 4.0810 4.6953 1.2605 39 1 4.0709 3.0889 2.1666 40 1 6.0692 2.3111 0.8106 41 1 6.0800 3.9170 -0.0962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934203895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:27 Heat of formation + Delta-G solvation = -59.963029 kcal Electronic energy + Delta-G solvation = -17458.808066 eV Core-core repulsion = 14759.101048 eV Total energy + Delta-G solvation = -2699.707018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17308 -38.51015 -36.07201 -34.95501 -33.88438 -30.98809 -30.41011 -28.54623 -25.23758 -23.95812 -23.40074 -22.88477 -21.78609 -20.24853 -19.06848 -17.52482 -17.33877 -16.74759 -16.39792 -16.14059 -15.67591 -15.22529 -14.72400 -14.59290 -14.46201 -14.02806 -13.88801 -13.76019 -13.21039 -12.97532 -12.87732 -12.62038 -12.33154 -12.21081 -12.06798 -11.97767 -11.82643 -11.74968 -11.43653 -11.30351 -11.11313 -10.97489 -10.91563 -10.30557 -9.00008 -8.36466 -6.44197 1.32632 1.36361 1.47181 2.29801 2.85833 2.95898 3.10832 3.15321 3.73101 3.85975 4.00676 4.17892 4.19252 4.27338 4.34217 4.38221 4.50379 4.53264 4.57658 4.64605 4.77189 4.79013 4.85861 4.90962 4.98820 5.01512 5.08487 5.11219 5.16781 5.22134 5.25242 5.37165 5.45288 5.49588 5.63841 5.95123 6.15221 6.51413 6.60275 6.81773 7.20544 8.81055 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.005219 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.028093 B = 5363.535658 C = 6394.570279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.111 4.111 4 C -0.065 4.065 5 C 0.049 3.951 6 N -0.657 5.657 7 C 0.066 3.934 8 C 0.052 3.948 9 O -0.394 6.394 10 C 0.179 3.821 11 C -0.544 4.544 12 H 0.026 0.974 13 C 0.012 3.988 14 N -0.944 5.944 15 Si 0.958 3.042 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.246 1.246 19 C -0.185 4.185 20 C -0.206 4.206 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.347 0.653 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.273 0.727 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.443 -13.936 4.144 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.043 4.043 6 N -0.287 5.287 7 C -0.062 4.062 8 C -0.025 4.025 9 O -0.314 6.314 10 C 0.103 3.897 11 C -0.581 4.581 12 H 0.044 0.956 13 C -0.186 4.186 14 N -0.583 5.583 15 Si 0.779 3.221 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.169 1.169 19 C -0.223 4.223 20 C -0.246 4.246 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.600 -13.684 4.563 21.247 hybrid contribution 0.467 0.589 -0.881 1.158 sum 16.067 -13.095 3.682 21.052 Atomic orbital electron populations 1.21799 0.96575 1.01775 1.01230 1.21511 0.95409 0.96192 1.02413 1.21422 0.95425 0.96585 1.01410 1.21036 0.95121 0.91159 1.02962 1.21822 0.95959 0.94742 0.91752 1.59983 1.60065 1.03125 1.05522 1.22040 0.95932 0.89685 0.98582 1.22680 0.83219 0.98464 0.98142 1.87984 1.23068 1.73998 1.46329 1.20287 0.91437 0.90216 0.87738 1.21163 0.94745 1.35042 1.07192 0.95591 1.25868 0.94648 0.95556 1.02520 1.70043 1.06631 1.41726 1.39917 0.85570 0.79824 0.78592 0.78084 1.18370 1.19763 1.16915 1.23209 1.03062 1.00451 0.95548 1.23671 0.91880 1.04334 1.04703 0.91595 0.93372 0.94057 0.91507 0.91017 0.93711 0.93345 0.90664 0.89870 0.83307 0.90957 0.91317 0.93160 0.92518 0.97255 0.97367 0.91828 0.90241 0.87735 0.87161 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.91 71.98 0.71 -2.66 16 2 C -0.12 -2.31 5.93 30.59 0.18 -2.13 16 3 C -0.11 -2.68 5.12 30.59 0.16 -2.53 16 4 C -0.07 -1.28 5.28 30.59 0.16 -1.11 16 5 C 0.05 1.14 2.65 3.53 0.01 1.15 16 6 N -0.66 -18.67 6.10 -470.20 -2.87 -21.54 16 7 C 0.07 1.86 5.08 86.30 0.44 2.30 16 8 C 0.05 1.77 6.25 71.98 0.45 2.22 16 9 O -0.39 -19.06 10.27 -148.98 -1.53 -20.59 16 10 C 0.18 9.28 4.76 71.23 0.34 9.62 16 11 C -0.54 -34.27 9.99 25.60 0.26 -34.01 16 12 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 13 C 0.01 0.71 5.47 84.65 0.46 1.17 16 14 N -0.94 -60.73 13.96 21.45 0.30 -60.43 16 15 Si 0.96 44.20 27.47 68.60 1.88 46.09 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 19 C -0.19 -4.27 9.59 30.62 0.29 -3.98 16 20 C -0.21 -3.86 9.52 30.62 0.29 -3.57 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.47 7.75 -2.38 -0.02 1.45 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.35 8.93 8.84 -89.69 -0.79 8.14 16 31 H 0.07 1.55 6.49 -2.39 -0.02 1.54 16 32 H 0.07 2.13 6.07 -2.39 -0.01 2.11 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 36 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.08 2.14 6.33 -2.39 -0.02 2.13 16 39 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.10 1.75 6.16 -2.38 -0.01 1.74 16 Total: -1.00 -71.96 328.57 1.67 -70.29 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.13 Total: 19.71 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 3.75 Total: -33.53 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.57 Total: -81.97 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -1.53 Total: -20.59 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -71.96 1.67 -70.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934203895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.327 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds