Wall clock time and date at job start Sun Mar 29 2020 22:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47618 * 2 1 4 4 C 1.52999 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47595 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99695 * 87.88148 * 5 4 3 7 7 H 1.08003 * 119.99787 * 224.05492 * 6 5 4 8 8 C 1.38807 * 119.99963 * 44.05707 * 6 5 4 9 9 N 1.31620 * 119.99464 * 183.71284 * 8 6 5 10 10 Si 1.86792 * 120.00170 * 3.71285 * 8 6 5 11 11 H 1.48503 * 109.47273 * 271.21404 * 10 8 6 12 12 H 1.48494 * 109.47408 * 31.21688 * 10 8 6 13 13 H 1.48508 * 109.46966 * 151.21369 * 10 8 6 14 14 C 1.46500 * 119.99948 * 267.88639 * 5 4 3 15 15 H 1.08998 * 109.54634 * 57.48074 * 14 5 4 16 16 C 1.53183 * 109.54019 * 177.74844 * 14 5 4 17 17 C 1.53094 * 109.16336 * 62.88440 * 16 14 5 18 18 O 1.42910 * 109.41336 * 57.60819 * 17 16 14 19 19 C 1.42902 * 114.09542 * 298.84028 * 18 17 16 20 20 H 1.09005 * 109.48766 * 301.16729 * 19 18 17 21 21 C 1.52999 * 109.47632 * 181.14648 * 19 18 17 22 22 C 1.53089 * 109.41738 * 61.15820 * 19 18 17 23 23 H 1.08998 * 109.47226 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46430 * 300.00085 * 1 2 3 25 25 H 1.09000 * 109.47087 * 59.99392 * 1 2 3 26 26 H 1.09007 * 109.46879 * 239.99771 * 2 1 3 27 27 H 1.09000 * 109.47087 * 120.00608 * 2 1 3 28 28 H 1.08994 * 109.47154 * 60.00219 * 3 2 1 29 29 H 1.09005 * 109.46997 * 300.00176 * 3 2 1 30 30 H 1.08998 * 109.47498 * 59.99675 * 4 3 2 31 31 H 1.09005 * 109.46902 * 299.99898 * 4 3 2 32 32 H 0.96999 * 119.99662 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.51809 * 182.79264 * 16 14 5 34 34 H 1.08996 * 109.52357 * 302.97642 * 16 14 5 35 35 H 1.08998 * 109.48104 * 297.62563 * 17 16 14 36 36 H 1.09002 * 109.47745 * 177.58763 * 17 16 14 37 37 H 1.09001 * 109.47132 * 305.02340 * 21 19 18 38 38 H 1.08996 * 109.47720 * 65.02896 * 21 19 18 39 39 H 1.09004 * 109.46857 * 185.03158 * 21 19 18 40 40 H 1.08995 * 109.52260 * 182.47959 * 22 19 18 41 41 H 1.09009 * 109.56979 * 62.32714 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0586 2.8235 0.0000 6 6 4.2460 3.4829 1.1855 7 1 3.9129 4.5045 1.2937 8 6 4.8643 2.8382 2.2480 9 7 4.9789 3.4461 3.4097 10 14 5.5334 1.1080 2.0291 11 1 4.4676 0.1220 2.3407 12 1 5.9822 0.9247 0.6255 13 1 6.6824 0.9018 2.9471 14 6 4.3464 3.4992 -1.2676 15 1 3.4521 3.5020 -1.8907 16 6 4.7854 4.9406 -0.9917 17 6 6.0846 4.9240 -0.1819 18 8 7.0836 4.1984 -0.9015 19 6 6.7482 2.8311 -1.1470 20 1 6.5798 2.3220 -0.1979 21 6 7.8967 2.1504 -1.8943 22 6 5.4757 2.7636 -1.9954 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6769 1.9562 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9331 0.9286 -0.8908 31 1 3.9338 0.9284 0.8892 32 1 5.4113 2.9958 4.1521 33 1 4.9517 5.4579 -1.9366 34 1 4.0096 5.4556 -0.4251 35 1 5.9074 4.4424 0.7797 36 1 6.4246 5.9468 -0.0193 37 1 8.1238 2.7120 -2.8006 38 1 8.7789 2.1201 -1.2550 39 1 7.6054 1.1342 -2.1601 40 1 5.1937 1.7217 -2.1467 41 1 5.6553 3.2363 -2.9611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168139633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:49 Heat of formation + Delta-G solvation = -34.124001 kcal Electronic energy + Delta-G solvation = -19383.837430 eV Core-core repulsion = 16685.250877 eV Total energy + Delta-G solvation = -2698.586553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11526 -36.16387 -34.12720 -32.42418 -31.84801 -30.74200 -27.75567 -27.20581 -24.20065 -23.48586 -21.85659 -21.03211 -20.61188 -18.74684 -16.59730 -15.94254 -15.37544 -15.01554 -14.63480 -14.50111 -14.06240 -13.48844 -13.00395 -12.85305 -12.65300 -12.47401 -12.03955 -11.93600 -11.75475 -11.50368 -11.31008 -11.23495 -11.10360 -10.94487 -10.57332 -10.47763 -10.31700 -10.17545 -9.86856 -9.67875 -9.23051 -9.16682 -8.65488 -8.21934 -6.69731 -6.00241 -3.53964 3.25369 3.37090 3.43654 4.43343 4.63941 4.88797 5.22631 5.36023 5.42246 5.50004 5.55282 5.62878 5.76644 5.87237 5.91268 6.02018 6.08800 6.12684 6.17747 6.19951 6.21474 6.27031 6.29650 6.36908 6.42463 6.50054 6.55575 6.56085 6.80386 6.83089 6.86518 6.91677 6.95255 7.07305 7.40185 8.06721 8.20424 8.36905 8.94440 9.62970 10.09374 11.11455 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.010782 C = 0.009343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.588797 B = 2596.234308 C = 2996.223012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.133 4.133 4 C 0.136 3.864 5 N -0.607 5.607 6 C -0.258 4.258 7 H 0.082 0.918 8 C 0.033 3.967 9 N -0.906 5.906 10 Si 0.892 3.108 11 H -0.287 1.287 12 H -0.259 1.259 13 H -0.307 1.307 14 C 0.176 3.824 15 H 0.035 0.965 16 C -0.133 4.133 17 C 0.038 3.962 18 O -0.395 6.395 19 C 0.083 3.917 20 H 0.077 0.923 21 C -0.143 4.143 22 C -0.162 4.162 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -3.928 -8.984 9.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.173 4.173 4 C 0.011 3.989 5 N -0.331 5.331 6 C -0.387 4.387 7 H 0.100 0.900 8 C -0.168 4.168 9 N -0.548 5.548 10 Si 0.726 3.274 11 H -0.216 1.216 12 H -0.185 1.185 13 H -0.236 1.236 14 C 0.070 3.930 15 H 0.052 0.948 16 C -0.170 4.170 17 C -0.038 4.038 18 O -0.315 6.315 19 C 0.026 3.974 20 H 0.095 0.905 21 C -0.200 4.200 22 C -0.202 4.202 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.520 -3.817 -8.869 9.775 hybrid contribution -0.022 -1.127 0.055 1.128 sum -1.542 -4.944 -8.814 10.223 Atomic orbital electron populations 1.21748 0.96492 1.00656 1.01616 1.21534 0.95326 0.98379 1.01196 1.22093 0.98587 0.94668 1.01964 1.21187 0.91996 0.87256 0.98418 1.44180 1.75636 1.11128 1.02149 1.18622 1.32718 0.99323 0.88057 0.90016 1.25577 0.96789 0.98072 0.96316 1.69736 1.45472 1.37674 1.01877 0.86860 0.77494 0.85423 0.77629 1.21597 1.18500 1.23610 1.20441 0.93379 0.91725 0.87439 0.94760 1.21998 0.99424 0.96289 0.99330 1.23329 0.86187 0.95635 0.98629 1.87693 1.44177 1.22378 1.77256 1.22130 0.92749 0.83698 0.98858 0.90537 1.21768 0.98457 0.99472 1.00319 1.22682 0.97874 1.00884 0.98750 0.93532 0.92821 0.93104 0.92797 0.92533 0.91483 0.92961 0.94146 0.93959 0.92582 0.93240 0.90933 0.86250 0.91604 0.92599 0.92670 0.92114 0.92306 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.13 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.45 5.53 -26.73 -0.15 -2.60 16 4 C 0.14 2.82 4.15 -4.04 -0.02 2.81 16 5 N -0.61 -13.48 1.61 -165.45 -0.27 -13.75 16 6 C -0.26 -6.61 6.22 -15.06 -0.09 -6.71 16 7 H 0.08 2.28 6.68 -52.48 -0.35 1.93 16 8 C 0.03 0.90 4.94 -17.43 -0.09 0.82 16 9 N -0.91 -26.46 13.97 55.49 0.78 -25.69 16 10 Si 0.89 21.86 23.19 -169.99 -3.94 17.92 16 11 H -0.29 -6.96 6.80 56.52 0.38 -6.58 16 12 H -0.26 -6.00 5.06 56.52 0.29 -5.71 16 13 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 14 C 0.18 3.49 3.32 -67.75 -0.22 3.26 16 15 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 16 C -0.13 -2.59 5.14 -26.59 -0.14 -2.72 16 17 C 0.04 0.80 6.42 37.21 0.24 1.04 16 18 O -0.40 -8.49 10.41 -35.23 -0.37 -8.86 16 19 C 0.08 1.67 3.10 -26.69 -0.08 1.59 16 20 H 0.08 1.76 4.07 -51.93 -0.21 1.55 16 21 C -0.14 -2.37 9.56 37.16 0.36 -2.01 16 22 C -0.16 -2.99 4.86 -26.60 -0.13 -3.12 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.77 6.54 -51.93 -0.34 0.43 16 31 H 0.04 0.97 2.49 -51.93 -0.13 0.84 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 35 H 0.12 2.99 4.39 -51.93 -0.23 2.76 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.04 6.68 -51.93 -0.35 0.69 16 41 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -27.61 297.44 -6.59 -34.20 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.16 Total: 3.04 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.11 Total: -11.34 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.51 Total: -39.43 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.37 Total: -8.86 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -3.94 Total: 17.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.61 -6.59 -34.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168139633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.071 kcal (2) G-P(sol) polarization free energy of solvation -27.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds