Wall clock time and date at job start Sun Mar 29 2020 22:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47618 * 2 1 4 4 C 1.52999 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47595 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99695 * 87.88148 * 5 4 3 7 7 H 1.08003 * 119.99787 * 224.05492 * 6 5 4 8 8 C 1.38807 * 119.99963 * 44.05707 * 6 5 4 9 9 N 1.31620 * 119.99464 * 183.71284 * 8 6 5 10 10 Si 1.86792 * 120.00170 * 3.71285 * 8 6 5 11 11 H 1.48503 * 109.47273 * 271.21404 * 10 8 6 12 12 H 1.48494 * 109.47408 * 31.21688 * 10 8 6 13 13 H 1.48508 * 109.46966 * 151.21369 * 10 8 6 14 14 C 1.46500 * 119.99948 * 267.88639 * 5 4 3 15 15 H 1.08998 * 109.54634 * 57.48074 * 14 5 4 16 16 C 1.53183 * 109.54019 * 177.74844 * 14 5 4 17 17 C 1.53094 * 109.16336 * 62.88440 * 16 14 5 18 18 O 1.42910 * 109.41336 * 57.60819 * 17 16 14 19 19 C 1.42902 * 114.09542 * 298.84028 * 18 17 16 20 20 H 1.09005 * 109.48766 * 301.16729 * 19 18 17 21 21 C 1.52999 * 109.47632 * 181.14648 * 19 18 17 22 22 C 1.53089 * 109.41738 * 61.15820 * 19 18 17 23 23 H 1.08998 * 109.47226 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46430 * 300.00085 * 1 2 3 25 25 H 1.09000 * 109.47087 * 59.99392 * 1 2 3 26 26 H 1.09007 * 109.46879 * 239.99771 * 2 1 3 27 27 H 1.09000 * 109.47087 * 120.00608 * 2 1 3 28 28 H 1.08994 * 109.47154 * 60.00219 * 3 2 1 29 29 H 1.09005 * 109.46997 * 300.00176 * 3 2 1 30 30 H 1.08998 * 109.47498 * 59.99675 * 4 3 2 31 31 H 1.09005 * 109.46902 * 299.99898 * 4 3 2 32 32 H 0.96999 * 119.99662 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.51809 * 182.79264 * 16 14 5 34 34 H 1.08996 * 109.52357 * 302.97642 * 16 14 5 35 35 H 1.08998 * 109.48104 * 297.62563 * 17 16 14 36 36 H 1.09002 * 109.47745 * 177.58763 * 17 16 14 37 37 H 1.09001 * 109.47132 * 305.02340 * 21 19 18 38 38 H 1.08996 * 109.47720 * 65.02896 * 21 19 18 39 39 H 1.09004 * 109.46857 * 185.03158 * 21 19 18 40 40 H 1.08995 * 109.52260 * 182.47959 * 22 19 18 41 41 H 1.09009 * 109.56979 * 62.32714 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0586 2.8235 0.0000 6 6 4.2460 3.4829 1.1855 7 1 3.9129 4.5045 1.2937 8 6 4.8643 2.8382 2.2480 9 7 4.9789 3.4461 3.4097 10 14 5.5334 1.1080 2.0291 11 1 4.4676 0.1220 2.3407 12 1 5.9822 0.9247 0.6255 13 1 6.6824 0.9018 2.9471 14 6 4.3464 3.4992 -1.2676 15 1 3.4521 3.5020 -1.8907 16 6 4.7854 4.9406 -0.9917 17 6 6.0846 4.9240 -0.1819 18 8 7.0836 4.1984 -0.9015 19 6 6.7482 2.8311 -1.1470 20 1 6.5798 2.3220 -0.1979 21 6 7.8967 2.1504 -1.8943 22 6 5.4757 2.7636 -1.9954 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6769 1.9562 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9331 0.9286 -0.8908 31 1 3.9338 0.9284 0.8892 32 1 5.4113 2.9958 4.1521 33 1 4.9517 5.4579 -1.9366 34 1 4.0096 5.4556 -0.4251 35 1 5.9074 4.4424 0.7797 36 1 6.4246 5.9468 -0.0193 37 1 8.1238 2.7120 -2.8006 38 1 8.7789 2.1201 -1.2550 39 1 7.6054 1.1342 -2.1601 40 1 5.1937 1.7217 -2.1467 41 1 5.6553 3.2363 -2.9611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168139633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:48 Heat of formation + Delta-G solvation = -50.570792 kcal Electronic energy + Delta-G solvation = -19384.550617 eV Core-core repulsion = 16685.250877 eV Total energy + Delta-G solvation = -2699.299740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75371 -37.79241 -35.57272 -34.23039 -33.47803 -32.36025 -29.35416 -28.68869 -25.93773 -25.02322 -23.44442 -22.63946 -21.99271 -20.43312 -18.52061 -17.70175 -16.95412 -16.62739 -16.30251 -15.99773 -15.58976 -15.03433 -14.67878 -14.49566 -14.27528 -13.98975 -13.54878 -13.29617 -13.22427 -13.02013 -12.86603 -12.78815 -12.65817 -12.55563 -12.06322 -11.94061 -11.82044 -11.75608 -11.52091 -11.37855 -10.94053 -10.85536 -10.49403 -10.03153 -8.54636 -8.09128 -5.59447 1.27618 1.36679 1.46393 2.41348 3.07265 3.18322 3.25441 3.96907 4.09457 4.12908 4.16313 4.27925 4.36260 4.38355 4.44097 4.56143 4.61467 4.66563 4.81328 4.83773 4.87948 4.91839 4.96014 4.99613 5.01010 5.09481 5.15611 5.23948 5.28604 5.33179 5.39242 5.42544 5.45436 5.56228 5.62624 6.02809 6.26666 6.56985 7.05168 7.65898 8.11466 9.04920 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.010782 C = 0.009343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.588797 B = 2596.234308 C = 2996.223012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.130 3.870 5 N -0.616 5.616 6 C -0.220 4.220 7 H 0.050 0.950 8 C -0.021 4.021 9 N -0.957 5.957 10 Si 0.939 3.061 11 H -0.286 1.286 12 H -0.235 1.235 13 H -0.327 1.327 14 C 0.169 3.831 15 H 0.055 0.945 16 C -0.128 4.128 17 C 0.040 3.960 18 O -0.402 6.402 19 C 0.071 3.929 20 H 0.044 0.956 21 C -0.138 4.138 22 C -0.153 4.153 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.258 0.742 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -5.298 -12.334 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.165 4.165 4 C 0.006 3.994 5 N -0.341 5.341 6 C -0.350 4.350 7 H 0.068 0.932 8 C -0.216 4.216 9 N -0.602 5.602 10 Si 0.773 3.227 11 H -0.214 1.214 12 H -0.159 1.159 13 H -0.258 1.258 14 C 0.064 3.936 15 H 0.073 0.927 16 C -0.165 4.165 17 C -0.036 4.036 18 O -0.322 6.322 19 C 0.013 3.987 20 H 0.061 0.939 21 C -0.195 4.195 22 C -0.193 4.193 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.937 -5.204 -12.278 13.476 hybrid contribution 0.070 -0.609 1.029 1.198 sum -1.867 -5.813 -11.249 12.799 Atomic orbital electron populations 1.21718 0.94718 1.02044 1.01714 1.21514 0.96915 0.96141 1.01597 1.21966 0.96847 0.96642 1.00998 1.21294 0.93519 0.86092 0.98465 1.44306 1.76127 1.11681 1.01938 1.18371 1.29718 0.97834 0.89070 0.93217 1.26073 0.98098 1.01170 0.96271 1.69869 1.48196 1.39275 1.02846 0.86095 0.76195 0.82168 0.78275 1.21430 1.15914 1.25816 1.20659 0.94945 0.91562 0.86478 0.92747 1.21955 0.97764 0.96763 1.00065 1.23112 0.87584 0.95734 0.97192 1.87693 1.44367 1.23262 1.76908 1.22329 0.95346 0.82767 0.98230 0.93855 1.21761 0.96909 1.00442 1.00395 1.22599 0.95932 1.01690 0.99056 0.91529 0.93781 0.92007 0.90728 0.93781 0.94607 0.91706 0.91612 0.96110 0.93319 0.90403 0.92272 0.90352 0.90668 0.90930 0.92995 0.89997 0.90927 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.50 5.93 30.59 0.18 -3.32 16 3 C -0.12 -4.35 5.53 30.59 0.17 -4.18 16 4 C 0.13 5.14 4.15 86.38 0.36 5.49 16 5 N -0.62 -26.64 1.61 -677.38 -1.09 -27.73 16 6 C -0.22 -11.50 6.22 84.03 0.52 -10.98 16 7 H 0.05 2.91 6.68 -2.91 -0.02 2.89 16 8 C -0.02 -1.16 4.94 84.86 0.42 -0.74 16 9 N -0.96 -58.77 13.97 21.65 0.30 -58.47 16 10 Si 0.94 46.06 23.19 68.60 1.59 47.65 16 11 H -0.29 -13.70 6.80 99.48 0.68 -13.02 16 12 H -0.23 -10.42 5.06 99.48 0.50 -9.92 16 13 H -0.33 -16.96 7.11 99.48 0.71 -16.25 16 14 C 0.17 6.19 3.32 45.11 0.15 6.34 16 15 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 16 C -0.13 -4.77 5.14 30.69 0.16 -4.61 16 17 C 0.04 1.68 6.42 72.01 0.46 2.15 16 18 O -0.40 -16.65 10.41 -148.98 -1.55 -18.20 16 19 C 0.07 2.65 3.10 30.62 0.10 2.75 16 20 H 0.04 1.93 4.07 -2.38 -0.01 1.92 16 21 C -0.14 -4.07 9.56 71.98 0.69 -3.38 16 22 C -0.15 -5.01 4.86 30.68 0.15 -4.86 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.07 2.26 6.54 -2.39 -0.02 2.24 16 31 H 0.02 0.93 2.49 -2.38 -0.01 0.93 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.35 7.05 -2.39 -0.02 2.33 16 35 H 0.08 4.04 4.39 -2.39 -0.01 4.03 16 36 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.07 2.19 6.68 -2.39 -0.02 2.17 16 41 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -61.65 297.44 4.07 -57.58 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.75 Total: 17.23 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 4.07 Total: -18.06 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -0.79 Total: -86.20 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.55 Total: -18.20 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.59 Total: 47.65 kcal Total: -61.65 4.07 -57.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168139633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.012 kcal (2) G-P(sol) polarization free energy of solvation -61.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds