Wall clock time and date at job start Sun Mar 29 2020 22:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47026 * 2 1 4 4 C 1.53002 * 109.46960 * 177.56714 * 3 2 1 5 5 N 1.46502 * 109.46807 * 181.86621 * 4 3 2 6 6 C 1.36938 * 119.99566 * 94.73740 * 5 4 3 7 7 H 1.08000 * 119.99419 * 216.84875 * 6 5 4 8 8 C 1.38804 * 120.00399 * 36.57329 * 6 5 4 9 9 N 1.31622 * 120.00099 * 213.07922 * 8 6 5 10 10 Si 1.86805 * 119.99756 * 33.08115 * 8 6 5 11 11 H 1.48503 * 109.47181 * 95.45976 * 10 8 6 12 12 H 1.48504 * 109.46753 * 215.45199 * 10 8 6 13 13 H 1.48496 * 109.47338 * 335.45349 * 10 8 6 14 14 C 1.46502 * 120.00346 * 274.72781 * 5 4 3 15 15 H 1.09001 * 109.53848 * 0.18779 * 14 5 4 16 16 C 1.53175 * 109.54103 * 120.44646 * 14 5 4 17 17 C 1.53089 * 109.16301 * 176.85448 * 16 14 5 18 18 O 1.42911 * 109.41194 * 302.38729 * 17 16 14 19 19 C 1.42903 * 114.09258 * 61.16349 * 18 17 16 20 20 H 1.08994 * 109.49294 * 58.82751 * 19 18 17 21 21 C 1.52998 * 109.47875 * 178.85984 * 19 18 17 22 22 C 1.53092 * 109.41586 * 298.83497 * 19 18 17 23 23 H 1.09004 * 109.46747 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47104 * 299.99558 * 1 2 3 25 25 H 1.09001 * 109.47156 * 59.99700 * 1 2 3 26 26 H 1.09002 * 109.47018 * 240.00128 * 2 1 3 27 27 H 1.08994 * 109.47509 * 120.00316 * 2 1 3 28 28 H 1.09000 * 109.47284 * 57.57258 * 3 2 1 29 29 H 1.08995 * 109.47156 * 297.56740 * 3 2 1 30 30 H 1.09004 * 109.46784 * 61.86869 * 4 3 2 31 31 H 1.08995 * 109.47582 * 301.87084 * 4 3 2 32 32 H 0.96999 * 119.99408 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.52343 * 296.75771 * 16 14 5 34 34 H 1.08998 * 109.52343 * 56.94163 * 16 14 5 35 35 H 1.09005 * 109.48255 * 182.41098 * 17 16 14 36 36 H 1.08993 * 109.49412 * 62.37986 * 17 16 14 37 37 H 1.08995 * 109.47571 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.46926 * 299.94270 * 21 19 18 39 39 H 1.09000 * 109.47353 * 59.93973 * 21 19 18 40 40 H 1.09003 * 109.52598 * 297.71059 * 22 19 18 41 41 H 1.09001 * 109.52583 * 177.51658 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5688 1.4429 0.0612 5 7 4.0552 2.8241 0.1062 6 6 4.3276 3.4151 1.3111 7 1 4.1073 4.4617 1.4611 8 6 4.8814 2.6678 2.3413 9 7 4.5728 2.9403 3.5915 10 14 6.0647 1.2753 1.9535 11 1 7.4612 1.7708 2.0511 12 1 5.8629 0.1696 2.9241 13 1 5.8107 0.7786 0.5773 14 6 4.2505 3.5729 -1.1378 15 1 3.9811 2.9452 -1.9872 16 6 3.3701 4.8262 -1.1250 17 6 3.6389 5.6422 -2.3921 18 8 5.0272 5.9751 -2.4570 19 6 5.8964 4.8426 -2.5192 20 1 5.6520 4.2442 -3.3968 21 6 7.3477 5.3178 -2.6138 22 6 5.7183 3.9945 -1.2571 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6415 1.9688 0.8674 29 1 1.7127 1.9436 -0.9109 30 1 3.9679 0.9457 -0.8229 31 1 3.8968 0.9129 0.9553 32 1 4.9601 2.4182 4.3114 33 1 2.3204 4.5338 -1.0960 34 1 3.6058 5.4280 -0.2473 35 1 3.0465 6.5569 -2.3680 36 1 3.3647 5.0545 -3.2681 37 1 8.0106 4.4540 -2.6607 38 1 7.4744 5.9217 -3.5123 39 1 7.5919 5.9165 -1.7363 40 1 6.0015 4.5795 -0.3821 41 1 6.3480 3.1072 -1.3226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168139635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:53 Heat of formation + Delta-G solvation = -48.459078 kcal Electronic energy + Delta-G solvation = -18712.574539 eV Core-core repulsion = 16013.366370 eV Total energy + Delta-G solvation = -2699.208169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.06652 -36.44760 -34.15182 -32.37497 -32.16226 -30.71915 -28.02406 -26.91973 -24.35976 -23.47653 -22.09195 -20.77843 -20.38950 -19.43893 -16.46844 -15.84812 -15.56786 -15.04756 -14.67827 -14.37614 -14.09868 -13.72069 -13.34675 -13.09778 -12.56819 -12.37091 -12.11320 -12.06270 -11.88083 -11.73661 -11.42125 -11.18304 -10.92921 -10.62612 -10.55625 -10.50693 -10.37414 -10.26954 -10.11014 -9.78190 -9.55371 -9.32940 -9.00214 -8.39549 -6.76687 -6.04153 -3.31778 3.37112 3.49836 3.54154 4.16441 4.56938 4.83371 5.18048 5.37507 5.39146 5.41690 5.47759 5.51467 5.59158 5.62293 5.74784 5.86138 5.90344 5.96316 6.02261 6.05693 6.17870 6.20274 6.27381 6.31045 6.34955 6.37942 6.42191 6.58918 6.59376 6.69278 6.71166 6.99742 7.02725 7.12398 7.17387 7.66973 8.06474 8.42640 9.04902 9.76546 10.19651 11.11760 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.009585 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.422919 B = 2920.388603 C = 3882.021884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.135 4.135 4 C 0.152 3.848 5 N -0.598 5.598 6 C -0.268 4.268 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.883 5.883 10 Si 0.846 3.154 11 H -0.292 1.292 12 H -0.296 1.296 13 H -0.262 1.262 14 C 0.178 3.822 15 H 0.048 0.952 16 C -0.161 4.161 17 C 0.066 3.934 18 O -0.385 6.385 19 C 0.088 3.912 20 H 0.047 0.953 21 C -0.142 4.142 22 C -0.155 4.155 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -0.899 -11.620 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.175 4.175 4 C 0.027 3.973 5 N -0.318 5.318 6 C -0.396 4.396 7 H 0.094 0.906 8 C -0.156 4.156 9 N -0.523 5.523 10 Si 0.673 3.327 11 H -0.220 1.220 12 H -0.223 1.223 13 H -0.187 1.187 14 C 0.070 3.930 15 H 0.066 0.934 16 C -0.200 4.200 17 C -0.011 4.011 18 O -0.305 6.305 19 C 0.030 3.970 20 H 0.065 0.935 21 C -0.200 4.200 22 C -0.195 4.195 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.940 -0.753 -11.410 11.598 hybrid contribution 0.630 -1.143 0.057 1.306 sum -1.310 -1.895 -11.353 11.585 Atomic orbital electron populations 1.21751 0.96602 1.00597 1.01569 1.21516 0.95210 0.98388 1.01182 1.22195 0.99060 0.94667 1.01591 1.21164 0.91292 0.86230 0.98662 1.44189 1.74725 1.11023 1.01895 1.18553 1.36932 0.97042 0.87036 0.90627 1.25424 0.98125 0.97252 0.94773 1.70056 1.41427 1.41605 0.99198 0.87373 0.83762 0.82888 0.78683 1.21988 1.22270 1.18676 1.20351 0.91986 0.91674 0.88946 0.93395 1.22601 1.00522 0.98709 0.98201 1.22543 0.82220 0.99361 0.97001 1.87848 1.16162 1.31701 1.94781 1.22107 0.90321 0.87411 0.97206 0.93479 1.21747 0.94277 1.01585 1.02351 1.22657 0.99364 0.99549 0.97923 0.93585 0.92777 0.93230 0.92939 0.92376 0.91404 0.93410 0.95235 0.92845 0.92854 0.91780 0.90377 0.89773 0.94241 0.91505 0.92608 0.91778 0.89932 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.14 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.15 3.25 3.84 -4.04 -0.02 3.23 16 5 N -0.60 -13.68 2.01 -165.45 -0.33 -14.01 16 6 C -0.27 -7.19 8.49 -15.06 -0.13 -7.32 16 7 H 0.08 2.22 6.92 -52.49 -0.36 1.86 16 8 C 0.05 1.29 5.03 -17.43 -0.09 1.20 16 9 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 10 Si 0.85 21.35 26.25 -169.99 -4.46 16.89 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 13 H -0.26 -6.30 5.86 56.52 0.33 -5.96 16 14 C 0.18 3.47 2.73 -67.75 -0.18 3.28 16 15 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 16 C -0.16 -2.92 5.43 -26.59 -0.14 -3.06 16 17 C 0.07 1.02 6.84 37.20 0.25 1.27 16 18 O -0.39 -6.60 10.41 -35.23 -0.37 -6.97 16 19 C 0.09 1.40 3.26 -26.68 -0.09 1.31 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.14 -1.96 9.56 37.16 0.36 -1.61 16 22 C -0.16 -2.94 4.72 -26.59 -0.13 -3.07 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 31 H 0.05 1.25 4.47 -51.93 -0.23 1.02 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.63 6.86 -51.93 -0.36 1.27 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.78 7.57 -51.93 -0.39 1.39 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -29.05 316.16 -7.44 -36.49 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.72 Total: -0.33 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.10 Total: -11.16 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.44 Total: -39.69 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.37 Total: -6.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.46 Total: 16.89 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.05 -7.44 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168139635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.970 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds