Wall clock time and date at job start Sun Mar 29 2020 22:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47099 * 2 1 4 4 C 1.52999 * 109.47147 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47278 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99942 * 264.51517 * 5 4 3 7 7 H 1.08007 * 120.00434 * 146.50010 * 6 5 4 8 8 C 1.38814 * 119.99755 * 326.49734 * 6 5 4 9 9 N 1.31616 * 120.00089 * 337.37526 * 8 6 5 10 10 Si 1.86809 * 119.99866 * 157.37554 * 8 6 5 11 11 H 1.48503 * 109.46961 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46990 * 119.99906 * 10 8 6 13 13 H 1.48498 * 109.46911 * 240.00108 * 10 8 6 14 14 C 1.46504 * 120.00411 * 84.51007 * 5 4 3 15 15 H 1.09000 * 109.53904 * 0.18021 * 14 5 4 16 16 C 1.53171 * 109.54422 * 240.00384 * 14 5 4 17 17 C 1.53099 * 109.16078 * 183.06169 * 16 14 5 18 18 O 1.42901 * 109.42225 * 57.60629 * 17 16 14 19 19 C 1.42906 * 114.09665 * 298.85349 * 18 17 16 20 20 H 1.09000 * 109.47551 * 301.16563 * 19 18 17 21 21 C 1.53006 * 109.48992 * 181.13465 * 19 18 17 22 22 C 1.53099 * 109.41920 * 61.14594 * 19 18 17 23 23 H 1.09003 * 109.47032 * 299.99930 * 1 2 3 24 24 H 1.08997 * 109.47123 * 59.99488 * 1 2 3 25 25 H 1.08994 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47032 * 240.00070 * 2 1 3 27 27 H 1.08993 * 109.47497 * 119.99854 * 2 1 3 28 28 H 1.08994 * 109.47704 * 60.00150 * 3 2 1 29 29 H 1.09005 * 109.47438 * 300.00029 * 3 2 1 30 30 H 1.09003 * 109.47329 * 59.99859 * 4 3 2 31 31 H 1.09002 * 109.47029 * 299.99459 * 4 3 2 32 32 H 0.97002 * 119.99974 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.52577 * 63.16025 * 16 14 5 34 34 H 1.09003 * 109.52504 * 302.96691 * 16 14 5 35 35 H 1.08996 * 109.47926 * 177.58867 * 17 16 14 36 36 H 1.08999 * 109.48263 * 297.61244 * 17 16 14 37 37 H 1.08992 * 109.47575 * 300.04296 * 21 19 18 38 38 H 1.09005 * 109.46678 * 60.04761 * 21 19 18 39 39 H 1.09005 * 109.46566 * 180.02562 * 21 19 18 40 40 H 1.09008 * 109.51884 * 182.49266 * 22 19 18 41 41 H 1.08996 * 109.57565 * 62.33436 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3929 3.4321 -1.1803 7 1 4.2306 4.4924 -1.3064 8 6 4.9409 2.6861 -2.2148 9 7 5.5457 1.5462 -1.9555 10 14 4.8198 3.2999 -3.9750 11 1 4.0977 4.5974 -3.9981 12 1 6.1847 3.4837 -4.5301 13 1 4.0811 2.3070 -4.7957 14 6 4.1886 3.5541 1.2632 15 1 3.8815 2.9122 2.0889 16 6 3.3017 4.8023 1.2273 17 6 3.5024 5.5988 2.5192 18 8 4.8835 5.9387 2.6583 19 6 5.7561 4.8103 2.7447 20 1 5.4724 4.1961 3.5993 21 6 7.1979 5.2921 2.9186 22 6 5.6459 3.9822 1.4617 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 3.9330 0.9288 -0.8909 31 1 3.9337 0.9286 0.8892 32 1 5.9283 1.0247 -2.6784 33 1 2.2567 4.5044 1.1418 34 1 3.5765 5.4200 0.3722 35 1 2.9060 6.5103 2.4807 36 1 3.1890 4.9951 3.3709 37 1 7.4813 5.9066 2.0642 38 1 7.2761 5.8817 3.8321 39 1 7.8632 4.4312 2.9840 40 1 6.2775 3.0975 1.5439 41 1 5.9684 4.5822 0.6109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168139636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:55 Heat of formation + Delta-G solvation = -54.027082 kcal Electronic energy + Delta-G solvation = -18645.981278 eV Core-core repulsion = 15946.531662 eV Total energy + Delta-G solvation = -2699.449616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.95129 -36.20727 -34.01553 -32.29960 -32.14594 -30.17055 -27.86341 -26.76667 -24.39147 -23.29180 -21.93169 -20.74246 -19.96547 -19.48172 -16.37848 -15.77713 -15.41364 -14.83211 -14.52908 -14.20714 -14.01017 -13.53335 -13.28818 -13.17882 -12.49428 -12.05257 -12.03453 -11.92934 -11.70347 -11.36114 -11.18800 -11.00100 -10.89460 -10.52914 -10.50550 -10.47128 -10.33644 -10.07001 -9.95421 -9.88893 -9.50081 -9.29380 -8.88471 -8.41446 -6.56099 -5.75433 -3.27153 3.36886 3.46065 3.48670 4.23452 4.50229 5.16940 5.29125 5.46124 5.48562 5.51522 5.57478 5.63928 5.68903 5.72629 5.80745 5.95938 6.01236 6.13184 6.15199 6.19269 6.27791 6.31852 6.39808 6.45704 6.47928 6.55191 6.64942 6.72582 6.81429 6.92062 6.92541 7.12868 7.28897 7.31725 7.74263 7.79883 7.86968 8.54222 9.23706 9.87608 10.43491 11.25474 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.009365 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.237767 B = 2989.159486 C = 4124.900855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.145 3.855 5 N -0.580 5.580 6 C -0.246 4.246 7 H 0.062 0.938 8 C 0.007 3.993 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.176 3.824 15 H 0.045 0.955 16 C -0.162 4.162 17 C 0.066 3.934 18 O -0.387 6.387 19 C 0.086 3.914 20 H 0.046 0.954 21 C -0.141 4.141 22 C -0.148 4.148 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.252 0.748 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 1.710 7.809 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.019 3.981 5 N -0.299 5.299 6 C -0.376 4.376 7 H 0.080 0.920 8 C -0.192 4.192 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.068 3.932 15 H 0.063 0.937 16 C -0.202 4.202 17 C -0.011 4.011 18 O -0.307 6.307 19 C 0.028 3.972 20 H 0.064 0.936 21 C -0.198 4.198 22 C -0.188 4.188 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.832 1.771 7.690 8.772 hybrid contribution -0.211 -0.066 -1.029 1.053 sum -4.043 1.705 6.661 7.976 Atomic orbital electron populations 1.21769 0.97056 1.00430 1.01286 1.21475 0.94582 0.98639 1.01289 1.22211 1.00548 0.94148 1.00481 1.21018 0.89057 0.86299 1.01728 1.43932 1.73593 1.11329 1.01010 1.19007 1.34671 0.93910 0.90038 0.92037 1.25036 0.97243 0.97944 0.98961 1.70009 1.36643 1.15781 1.30799 0.86394 0.77373 0.78410 0.85670 1.20187 1.21811 1.21570 1.20345 0.91961 0.91523 0.89391 0.93689 1.22640 1.00712 0.99184 0.97657 1.22521 0.82489 0.99177 0.96901 1.87826 1.16675 1.32006 1.94201 1.22168 0.90146 0.87448 0.97483 0.93575 1.21736 0.94537 1.01569 1.01966 1.22597 0.99788 0.99639 0.96727 0.93350 0.93103 0.93684 0.92349 0.92936 0.94265 0.92595 0.88205 0.96538 0.93775 0.91989 0.90884 0.89985 0.94260 0.91939 0.92785 0.91415 0.91754 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.64 5.54 -26.73 -0.15 -2.78 16 4 C 0.15 3.35 5.18 -4.04 -0.02 3.33 16 5 N -0.58 -13.96 2.41 -165.45 -0.40 -14.36 16 6 C -0.25 -6.54 8.19 -15.06 -0.12 -6.66 16 7 H 0.06 1.66 6.78 -52.48 -0.36 1.31 16 8 C 0.01 0.20 4.91 -17.43 -0.09 0.12 16 9 N -0.89 -25.16 11.34 55.49 0.63 -24.53 16 10 Si 0.89 21.56 29.61 -169.99 -5.03 16.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.18 3.64 2.72 -67.75 -0.18 3.45 16 15 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16 16 C -0.16 -3.04 5.44 -26.59 -0.14 -3.18 16 17 C 0.07 1.06 6.84 37.21 0.25 1.32 16 18 O -0.39 -6.88 10.41 -35.23 -0.37 -7.25 16 19 C 0.09 1.45 3.26 -26.68 -0.09 1.36 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.14 -2.05 9.57 37.16 0.36 -1.69 16 22 C -0.15 -2.98 4.72 -26.59 -0.13 -3.11 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.10 2.62 5.33 -51.93 -0.28 2.35 16 31 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.52 6.87 -51.93 -0.36 1.16 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 41 H 0.08 1.74 7.57 -51.93 -0.39 1.35 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -27.94 320.19 -8.13 -36.07 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.68 Total: 0.47 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.10 Total: -11.75 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.23 Total: -38.89 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.37 Total: -7.25 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.94 -8.13 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168139636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.958 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds