Wall clock time and date at job start Sun Mar 29 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47099 * 2 1 4 4 C 1.52999 * 109.47147 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47278 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99942 * 264.51517 * 5 4 3 7 7 H 1.08007 * 120.00434 * 146.50010 * 6 5 4 8 8 C 1.38814 * 119.99755 * 326.49734 * 6 5 4 9 9 N 1.31616 * 120.00089 * 337.37526 * 8 6 5 10 10 Si 1.86809 * 119.99866 * 157.37554 * 8 6 5 11 11 H 1.48503 * 109.46961 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46990 * 119.99906 * 10 8 6 13 13 H 1.48498 * 109.46911 * 240.00108 * 10 8 6 14 14 C 1.46504 * 120.00411 * 84.51007 * 5 4 3 15 15 H 1.09000 * 109.53904 * 0.18021 * 14 5 4 16 16 C 1.53171 * 109.54422 * 240.00384 * 14 5 4 17 17 C 1.53099 * 109.16078 * 183.06169 * 16 14 5 18 18 O 1.42901 * 109.42225 * 57.60629 * 17 16 14 19 19 C 1.42906 * 114.09665 * 298.85349 * 18 17 16 20 20 H 1.09000 * 109.47551 * 301.16563 * 19 18 17 21 21 C 1.53006 * 109.48992 * 181.13465 * 19 18 17 22 22 C 1.53099 * 109.41920 * 61.14594 * 19 18 17 23 23 H 1.09003 * 109.47032 * 299.99930 * 1 2 3 24 24 H 1.08997 * 109.47123 * 59.99488 * 1 2 3 25 25 H 1.08994 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47032 * 240.00070 * 2 1 3 27 27 H 1.08993 * 109.47497 * 119.99854 * 2 1 3 28 28 H 1.08994 * 109.47704 * 60.00150 * 3 2 1 29 29 H 1.09005 * 109.47438 * 300.00029 * 3 2 1 30 30 H 1.09003 * 109.47329 * 59.99859 * 4 3 2 31 31 H 1.09002 * 109.47029 * 299.99459 * 4 3 2 32 32 H 0.97002 * 119.99974 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.52577 * 63.16025 * 16 14 5 34 34 H 1.09003 * 109.52504 * 302.96691 * 16 14 5 35 35 H 1.08996 * 109.47926 * 177.58867 * 17 16 14 36 36 H 1.08999 * 109.48263 * 297.61244 * 17 16 14 37 37 H 1.08992 * 109.47575 * 300.04296 * 21 19 18 38 38 H 1.09005 * 109.46678 * 60.04761 * 21 19 18 39 39 H 1.09005 * 109.46566 * 180.02562 * 21 19 18 40 40 H 1.09008 * 109.51884 * 182.49266 * 22 19 18 41 41 H 1.08996 * 109.57565 * 62.33436 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3929 3.4321 -1.1803 7 1 4.2306 4.4924 -1.3064 8 6 4.9409 2.6861 -2.2148 9 7 5.5457 1.5462 -1.9555 10 14 4.8198 3.2999 -3.9750 11 1 4.0977 4.5974 -3.9981 12 1 6.1847 3.4837 -4.5301 13 1 4.0811 2.3070 -4.7957 14 6 4.1886 3.5541 1.2632 15 1 3.8815 2.9122 2.0889 16 6 3.3017 4.8023 1.2273 17 6 3.5024 5.5988 2.5192 18 8 4.8835 5.9387 2.6583 19 6 5.7561 4.8103 2.7447 20 1 5.4724 4.1961 3.5993 21 6 7.1979 5.2921 2.9186 22 6 5.6459 3.9822 1.4617 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 3.9330 0.9288 -0.8909 31 1 3.9337 0.9286 0.8892 32 1 5.9283 1.0247 -2.6784 33 1 2.2567 4.5044 1.1418 34 1 3.5765 5.4200 0.3722 35 1 2.9060 6.5103 2.4807 36 1 3.1890 4.9951 3.3709 37 1 7.4813 5.9066 2.0642 38 1 7.2761 5.8817 3.8321 39 1 7.8632 4.4312 2.9840 40 1 6.2775 3.0975 1.5439 41 1 5.9684 4.5822 0.6109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168139636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:54 Heat of formation + Delta-G solvation = -68.746925 kcal Electronic energy + Delta-G solvation = -18646.619578 eV Core-core repulsion = 15946.531662 eV Total energy + Delta-G solvation = -2700.087916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42874 -37.91736 -35.49972 -34.08117 -33.57487 -31.88423 -29.41754 -28.28330 -26.23200 -24.77287 -23.37626 -22.22435 -21.61141 -21.13281 -18.27431 -17.17187 -17.10668 -16.44743 -16.12602 -15.89054 -15.51629 -15.10810 -14.95329 -14.51767 -14.02861 -13.62225 -13.41558 -13.23862 -13.13962 -12.91399 -12.86363 -12.79961 -12.64307 -12.25794 -12.01042 -11.92170 -11.80501 -11.74883 -11.62282 -11.51066 -11.22794 -10.91869 -10.45199 -10.34335 -8.54727 -7.80378 -5.35197 1.41210 1.45358 1.54132 2.50619 2.93652 3.25318 3.53114 4.03928 4.08553 4.15336 4.19092 4.28121 4.34689 4.41395 4.44136 4.58523 4.63750 4.67763 4.71082 4.85703 4.87466 4.96163 5.02071 5.04514 5.08668 5.15125 5.16357 5.21813 5.33723 5.35834 5.46771 5.53178 5.58774 5.61905 5.72914 5.91603 6.39948 6.49274 7.20582 7.92444 8.41864 9.16653 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.009365 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.237767 B = 2989.159486 C = 4124.900855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.119 4.119 4 C 0.145 3.855 5 N -0.594 5.594 6 C -0.243 4.243 7 H 0.052 0.948 8 C -0.040 4.040 9 N -0.917 5.917 10 Si 0.946 3.054 11 H -0.272 1.272 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.168 3.832 15 H 0.057 0.943 16 C -0.153 4.153 17 C 0.069 3.931 18 O -0.398 6.398 19 C 0.090 3.910 20 H 0.067 0.933 21 C -0.138 4.138 22 C -0.139 4.139 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.249 0.751 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 2.186 9.446 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.159 4.159 4 C 0.019 3.981 5 N -0.314 5.314 6 C -0.373 4.373 7 H 0.069 0.931 8 C -0.237 4.237 9 N -0.563 5.563 10 Si 0.775 3.225 11 H -0.197 1.197 12 H -0.221 1.221 13 H -0.216 1.216 14 C 0.061 3.939 15 H 0.075 0.925 16 C -0.192 4.192 17 C -0.008 4.008 18 O -0.318 6.318 19 C 0.032 3.968 20 H 0.085 0.915 21 C -0.195 4.195 22 C -0.179 4.179 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.086 2.263 9.344 10.876 hybrid contribution 0.177 -0.214 -1.487 1.513 sum -4.909 2.049 7.857 9.488 Atomic orbital electron populations 1.21712 0.94583 1.01973 1.01681 1.21438 0.96713 0.96281 1.01234 1.21993 0.97746 0.96237 0.99909 1.20948 0.91338 0.85694 1.00086 1.44152 1.73919 1.11701 1.01616 1.19078 1.33478 0.93518 0.91249 0.93081 1.25618 0.97721 0.98451 1.01871 1.70124 1.38001 1.16867 1.31277 0.85539 0.76964 0.77978 0.82015 1.19656 1.22089 1.21617 1.20565 0.92784 0.92320 0.88225 0.92471 1.22507 1.00329 0.97956 0.98448 1.22640 0.82077 1.00294 0.95800 1.87832 1.17536 1.32376 1.94059 1.22186 0.91553 0.87218 0.95851 0.91546 1.21739 0.93136 1.02138 1.02520 1.22468 0.98972 0.98896 0.97544 0.92233 0.93441 0.91609 0.93600 0.91875 0.93111 0.94664 0.91443 0.96533 0.94212 0.91383 0.93702 0.87551 0.91899 0.93144 0.90549 0.90375 0.93501 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.80 5.93 30.59 0.18 -3.62 16 3 C -0.12 -4.63 5.54 30.59 0.17 -4.46 16 4 C 0.15 6.81 5.18 86.38 0.45 7.25 16 5 N -0.59 -29.10 2.41 -677.37 -1.63 -30.73 16 6 C -0.24 -13.21 8.19 84.03 0.69 -12.52 16 7 H 0.05 2.85 6.78 -2.91 -0.02 2.83 16 8 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 9 N -0.92 -53.57 11.34 21.65 0.25 -53.33 16 10 Si 0.95 45.37 29.61 68.60 2.03 47.40 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 14 C 0.17 6.90 2.72 45.11 0.12 7.02 16 15 H 0.06 2.20 7.87 -2.39 -0.02 2.18 16 16 C -0.15 -5.56 5.44 30.68 0.17 -5.39 16 17 C 0.07 2.00 6.84 72.02 0.49 2.50 16 18 O -0.40 -13.23 10.41 -148.98 -1.55 -14.78 16 19 C 0.09 2.88 3.26 30.63 0.10 2.98 16 20 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 21 C -0.14 -3.78 9.57 71.98 0.69 -3.09 16 22 C -0.14 -5.65 4.72 30.69 0.14 -5.50 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 3.67 5.33 -2.39 -0.01 3.65 16 31 H 0.02 0.75 8.04 -2.39 -0.02 0.73 16 32 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.87 6.87 -2.39 -0.02 1.85 16 35 H 0.11 2.61 8.14 -2.39 -0.02 2.60 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 Total: -1.00 -61.13 320.19 4.38 -56.74 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.95 Total: 14.27 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.33 Total: -19.59 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.38 Total: -84.05 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.55 Total: -14.78 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -61.13 4.38 -56.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168139636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.003 kcal (2) G-P(sol) polarization free energy of solvation -61.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds