Wall clock time and date at job start Sun Mar 29 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.09000 * 109.48147 * 54.97522 * 3 2 1 5 5 C 1.53091 * 109.47810 * 174.99866 * 3 2 1 6 6 C 1.53181 * 109.16130 * 177.59158 * 5 3 2 7 7 H 1.08997 * 109.54510 * 183.07088 * 6 5 3 8 8 N 1.46902 * 109.54560 * 62.88761 * 6 5 3 9 9 C 1.46893 * 111.00110 * 154.99945 * 8 6 5 10 10 C 1.53001 * 109.47061 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46872 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46973 * 180.02562 * 11 10 9 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.53188 * 109.03362 * 303.01907 * 6 5 3 21 21 C 1.53092 * 109.16229 * 56.98352 * 20 6 5 22 22 O 1.42903 * 109.41513 * 302.38822 * 21 20 6 23 23 H 1.09001 * 109.47020 * 59.99981 * 1 2 3 24 24 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46952 * 300.00024 * 1 2 3 26 26 H 1.08998 * 109.46815 * 239.99715 * 2 1 3 27 27 H 1.09001 * 109.47020 * 120.00019 * 2 1 3 28 28 H 1.09001 * 109.52074 * 57.68878 * 5 3 2 29 29 H 1.09000 * 109.52623 * 297.49516 * 5 3 2 30 30 H 1.00905 * 110.99227 * 278.95508 * 8 6 5 31 31 H 1.09007 * 109.47355 * 60.00194 * 9 8 6 32 32 H 1.09000 * 109.47422 * 300.00155 * 9 8 6 33 33 H 1.08996 * 109.46845 * 60.00446 * 10 9 8 34 34 H 1.08996 * 109.47077 * 299.99617 * 10 9 8 35 35 H 1.08994 * 109.48028 * 60.00123 * 11 10 9 36 36 H 1.09000 * 109.47206 * 299.99977 * 11 10 9 37 37 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.51674 * 176.88743 * 20 6 5 39 39 H 1.08994 * 109.52477 * 297.07137 * 20 6 5 40 40 H 1.08998 * 109.48051 * 182.40738 * 21 20 6 41 41 H 1.09003 * 109.49102 * 62.37819 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 0.8415 5 6 3.5658 1.4445 0.1258 6 6 4.0734 2.8885 0.0646 7 1 5.1628 2.8938 0.0988 8 7 3.5421 3.6451 1.2062 9 6 4.4116 4.7827 1.5343 10 6 3.8265 5.5450 2.7249 11 6 4.7318 6.7302 3.0662 12 6 4.1559 7.4807 4.2394 13 1 3.2365 7.1455 4.6960 14 6 4.8034 8.5946 4.7303 15 7 4.3011 9.2493 5.7544 16 14 6.3941 9.1739 3.9407 17 1 7.5463 8.5165 4.6084 18 1 6.5118 10.6470 4.0874 19 1 6.3891 8.8189 2.4988 20 6 3.5969 3.5305 -1.2421 21 6 2.0699 3.4479 -1.3150 22 8 1.6632 2.0812 -1.2216 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9995 0.8709 -0.6933 29 1 3.8534 0.9974 1.0774 30 1 2.5972 3.9514 1.0286 31 1 4.4783 5.4490 0.6741 32 1 5.4065 4.4179 1.7894 33 1 3.7595 4.8790 3.5852 34 1 2.8318 5.9099 2.4694 35 1 4.7986 7.3961 2.2059 36 1 5.7268 6.3657 3.3216 37 1 4.7564 10.0331 6.0994 38 1 3.9069 4.5752 -1.2688 39 1 4.0313 2.9991 -2.0887 40 1 1.7282 3.8649 -2.2623 41 1 1.6353 4.0137 -0.4909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170170987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:59 Heat of formation + Delta-G solvation = -76.317231 kcal Electronic energy + Delta-G solvation = -17716.137787 eV Core-core repulsion = 15015.721598 eV Total energy + Delta-G solvation = -2700.416189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01084 -36.46059 -34.13348 -33.93753 -32.18891 -30.13168 -29.95644 -26.41467 -24.87957 -23.79319 -22.29732 -21.51071 -20.14752 -19.35478 -16.79934 -16.53225 -16.28869 -15.61575 -15.04705 -14.58000 -14.38378 -14.02740 -13.84381 -13.75744 -13.31240 -12.79417 -12.29888 -12.22666 -12.17405 -11.86612 -11.73634 -11.54562 -11.29164 -11.08454 -11.02366 -10.90635 -10.74455 -10.30256 -9.95895 -9.73530 -9.56265 -9.43009 -9.16977 -8.53180 -8.27037 -6.03434 -4.01230 3.30602 3.37777 3.41207 3.65957 4.26275 4.45570 4.55333 4.70756 4.79746 4.83650 5.01550 5.02426 5.20038 5.30264 5.31840 5.38539 5.51449 5.58023 5.62818 5.71723 5.74358 5.79150 5.82888 5.88356 5.94507 6.00262 6.11158 6.16277 6.18971 6.54408 6.56864 6.91033 7.15177 7.19651 7.33698 7.42990 7.52590 7.80917 8.55740 9.02085 9.59146 11.10176 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040367 B = 0.004111 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.460932 B = 6809.358754 C = 7085.419066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.088 3.912 4 H 0.066 0.934 5 C -0.136 4.136 6 C 0.082 3.918 7 H 0.080 0.920 8 N -0.685 5.685 9 C 0.056 3.944 10 C -0.100 4.100 11 C -0.012 4.012 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.267 1.267 20 C -0.187 4.187 21 C 0.062 3.938 22 O -0.380 6.380 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.337 0.663 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -16.529 -15.048 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.031 3.969 4 H 0.084 0.916 5 C -0.174 4.174 6 C -0.028 4.028 7 H 0.098 0.902 8 N -0.317 5.317 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.050 4.050 12 C -0.557 4.557 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.227 4.227 21 C -0.015 4.015 22 O -0.299 6.299 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.967 -16.884 -14.591 22.512 hybrid contribution 0.909 1.309 -0.845 1.804 sum -2.058 -15.575 -15.437 22.025 Atomic orbital electron populations 1.21724 0.95393 1.01295 1.02339 1.21539 0.96616 0.94608 1.02462 1.22163 0.93872 0.93846 0.87025 0.91578 1.22195 0.96173 0.96266 1.02745 1.21610 0.99587 0.93503 0.88111 0.90179 1.60721 1.06002 1.26632 1.38322 1.22189 0.96775 0.90400 0.97880 1.21446 0.99234 0.97199 0.95899 1.19538 0.95150 0.93417 0.96934 1.21153 1.10322 1.10644 1.13585 0.91038 1.25046 0.97513 0.96346 0.94701 1.69919 1.39954 1.19582 1.24909 0.86762 0.84209 0.77718 0.80462 1.20297 1.21421 1.19133 1.22840 0.97551 1.02238 1.00052 1.22497 0.93625 0.83390 1.01963 1.87890 1.78685 1.24405 1.38963 0.92082 0.92997 0.92771 0.91485 0.90625 0.91357 0.90160 0.84371 0.95782 0.91454 0.91937 0.93139 0.96890 0.97069 0.92771 0.90853 0.90761 0.88965 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 37.16 0.36 -0.96 16 2 C -0.11 -1.04 5.64 -26.73 -0.15 -1.20 16 3 C 0.09 0.95 2.40 -26.68 -0.06 0.88 16 4 H 0.07 0.77 7.38 -51.93 -0.38 0.39 16 5 C -0.14 -1.42 5.12 -26.59 -0.14 -1.56 16 6 C 0.08 0.96 2.89 -67.52 -0.19 0.76 16 7 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 8 N -0.68 -9.43 5.86 -106.53 -0.62 -10.05 16 9 C 0.06 0.90 5.49 -3.83 -0.02 0.88 16 10 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 11 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 12 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 16 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.19 -1.99 5.72 -26.59 -0.15 -2.14 16 21 C 0.06 0.66 6.58 37.21 0.24 0.90 16 22 O -0.38 -4.43 9.94 -35.23 -0.35 -4.79 16 23 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.34 4.53 5.83 -39.29 -0.23 4.30 16 31 H 0.02 0.38 7.43 -51.93 -0.39 -0.01 16 32 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 36 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.07 0.80 7.43 -51.93 -0.39 0.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -30.52 316.88 -8.42 -38.94 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.53 Total: -0.19 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.80 Total: -18.51 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.15 Total: -37.51 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.35 Total: -4.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.52 -8.42 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170170987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.381 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds