Wall clock time and date at job start Sun Mar 29 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.09000 * 109.48147 * 54.97522 * 3 2 1 5 5 C 1.53091 * 109.47810 * 174.99866 * 3 2 1 6 6 C 1.53181 * 109.16130 * 177.59158 * 5 3 2 7 7 H 1.08997 * 109.54510 * 183.07088 * 6 5 3 8 8 N 1.46902 * 109.54560 * 62.88761 * 6 5 3 9 9 C 1.46893 * 111.00110 * 154.99945 * 8 6 5 10 10 C 1.53001 * 109.47061 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46872 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46973 * 180.02562 * 11 10 9 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.53188 * 109.03362 * 303.01907 * 6 5 3 21 21 C 1.53092 * 109.16229 * 56.98352 * 20 6 5 22 22 O 1.42903 * 109.41513 * 302.38822 * 21 20 6 23 23 H 1.09001 * 109.47020 * 59.99981 * 1 2 3 24 24 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46952 * 300.00024 * 1 2 3 26 26 H 1.08998 * 109.46815 * 239.99715 * 2 1 3 27 27 H 1.09001 * 109.47020 * 120.00019 * 2 1 3 28 28 H 1.09001 * 109.52074 * 57.68878 * 5 3 2 29 29 H 1.09000 * 109.52623 * 297.49516 * 5 3 2 30 30 H 1.00905 * 110.99227 * 278.95508 * 8 6 5 31 31 H 1.09007 * 109.47355 * 60.00194 * 9 8 6 32 32 H 1.09000 * 109.47422 * 300.00155 * 9 8 6 33 33 H 1.08996 * 109.46845 * 60.00446 * 10 9 8 34 34 H 1.08996 * 109.47077 * 299.99617 * 10 9 8 35 35 H 1.08994 * 109.48028 * 60.00123 * 11 10 9 36 36 H 1.09000 * 109.47206 * 299.99977 * 11 10 9 37 37 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.51674 * 176.88743 * 20 6 5 39 39 H 1.08994 * 109.52477 * 297.07137 * 20 6 5 40 40 H 1.08998 * 109.48051 * 182.40738 * 21 20 6 41 41 H 1.09003 * 109.49102 * 62.37819 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 0.8415 5 6 3.5658 1.4445 0.1258 6 6 4.0734 2.8885 0.0646 7 1 5.1628 2.8938 0.0988 8 7 3.5421 3.6451 1.2062 9 6 4.4116 4.7827 1.5343 10 6 3.8265 5.5450 2.7249 11 6 4.7318 6.7302 3.0662 12 6 4.1559 7.4807 4.2394 13 1 3.2365 7.1455 4.6960 14 6 4.8034 8.5946 4.7303 15 7 4.3011 9.2493 5.7544 16 14 6.3941 9.1739 3.9407 17 1 7.5463 8.5165 4.6084 18 1 6.5118 10.6470 4.0874 19 1 6.3891 8.8189 2.4988 20 6 3.5969 3.5305 -1.2421 21 6 2.0699 3.4479 -1.3150 22 8 1.6632 2.0812 -1.2216 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9995 0.8709 -0.6933 29 1 3.8534 0.9974 1.0774 30 1 2.5972 3.9514 1.0286 31 1 4.4783 5.4490 0.6741 32 1 5.4065 4.4179 1.7894 33 1 3.7595 4.8790 3.5852 34 1 2.8318 5.9099 2.4694 35 1 4.7986 7.3961 2.2059 36 1 5.7268 6.3657 3.3216 37 1 4.7564 10.0331 6.0994 38 1 3.9069 4.5752 -1.2688 39 1 4.0313 2.9991 -2.0887 40 1 1.7282 3.8649 -2.2623 41 1 1.6353 4.0137 -0.4909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170170987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:58 Heat of formation + Delta-G solvation = -95.849112 kcal Electronic energy + Delta-G solvation = -17716.984753 eV Core-core repulsion = 15015.721598 eV Total energy + Delta-G solvation = -2701.263155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89289 -37.62814 -35.69450 -34.83809 -34.00356 -31.60463 -30.74349 -28.07968 -25.82917 -24.63236 -23.94069 -22.36009 -21.78300 -20.31710 -18.92529 -17.35396 -17.28977 -16.66314 -16.44538 -15.97680 -15.65172 -15.22363 -14.93756 -14.77784 -14.56715 -14.08740 -13.86184 -13.53767 -13.25915 -13.01469 -12.80794 -12.62498 -12.55487 -12.52105 -12.07833 -11.83005 -11.81730 -11.73513 -11.51455 -11.47076 -11.31417 -11.01673 -10.77097 -10.29284 -9.35936 -8.30009 -6.34550 1.35611 1.37524 1.49618 2.35898 2.85694 3.05209 3.17585 3.73693 3.84795 3.96289 4.00355 4.16086 4.23451 4.25326 4.34614 4.44429 4.54204 4.61528 4.64556 4.75221 4.76816 4.85594 4.94413 4.95196 4.97529 5.08089 5.11815 5.13884 5.15608 5.20104 5.33409 5.46969 5.50489 5.60098 5.65677 6.08894 6.28820 6.32685 6.40954 6.73893 7.30110 8.87101 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040367 B = 0.004111 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.460932 B = 6809.358754 C = 7085.419066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.087 3.913 4 H 0.052 0.948 5 C -0.130 4.130 6 C 0.080 3.920 7 H 0.082 0.918 8 N -0.689 5.689 9 C 0.070 3.930 10 C -0.091 4.091 11 C -0.009 4.009 12 C -0.535 4.535 13 H 0.028 0.972 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.181 4.181 21 C 0.059 3.941 22 O -0.390 6.390 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.338 0.662 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -17.443 -17.082 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.029 3.971 4 H 0.070 0.930 5 C -0.168 4.168 6 C -0.030 4.030 7 H 0.100 0.900 8 N -0.321 5.321 9 C -0.059 4.059 10 C -0.130 4.130 11 C -0.047 4.047 12 C -0.573 4.573 13 H 0.047 0.953 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.168 1.168 20 C -0.220 4.220 21 C -0.018 4.018 22 O -0.310 6.310 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.497 -17.823 -16.641 24.430 hybrid contribution 0.336 1.561 -0.153 1.604 sum -1.161 -16.262 -16.794 23.406 Atomic orbital electron populations 1.21707 0.95342 1.01972 1.01594 1.21557 0.96666 0.93665 1.03177 1.22209 0.94031 0.94519 0.86306 0.92997 1.22156 0.95948 0.95582 1.03158 1.21691 0.99692 0.93834 0.87764 0.89962 1.60659 1.05821 1.25719 1.39907 1.21916 0.96839 0.90888 0.96242 1.21271 0.98420 0.96003 0.97261 1.19482 0.95896 0.94402 0.94939 1.21526 1.09162 1.11441 1.15152 0.95345 1.26088 1.01836 0.96429 0.95226 1.70080 1.42106 1.20410 1.26807 0.85584 0.78891 0.77243 0.80453 1.19094 1.20963 1.16844 1.22772 0.97400 1.02125 0.99701 1.22589 0.93745 0.83008 1.02469 1.87886 1.78941 1.24855 1.39272 0.93086 0.91630 0.93233 0.91023 0.89586 0.90154 0.90288 0.84239 0.94950 0.91045 0.93325 0.93757 0.96162 0.96235 0.92486 0.90999 0.89730 0.87602 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.81 71.98 0.71 -1.74 16 2 C -0.11 -1.87 5.64 30.60 0.17 -1.70 16 3 C 0.09 1.74 2.40 30.62 0.07 1.81 16 4 H 0.05 1.18 7.38 -2.39 -0.02 1.16 16 5 C -0.13 -2.47 5.12 30.69 0.16 -2.32 16 6 C 0.08 1.69 2.89 45.04 0.13 1.82 16 7 H 0.08 1.73 7.80 -2.39 -0.02 1.71 16 8 N -0.69 -17.95 5.86 -490.94 -2.88 -20.83 16 9 C 0.07 2.12 5.49 86.30 0.47 2.60 16 10 C -0.09 -3.60 5.41 30.59 0.17 -3.44 16 11 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 12 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 13 H 0.03 1.85 7.99 -2.92 -0.02 1.83 16 14 C 0.00 0.04 5.47 84.65 0.46 0.50 16 15 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 16 Si 0.96 44.56 27.47 68.60 1.88 46.45 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 20 C -0.18 -3.41 5.72 30.69 0.18 -3.23 16 21 C 0.06 1.15 6.58 72.01 0.47 1.62 16 22 O -0.39 -8.50 9.94 -148.98 -1.48 -9.99 16 23 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.34 8.76 5.83 -89.69 -0.52 8.23 16 31 H 0.03 0.94 7.43 -2.38 -0.02 0.92 16 32 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 36 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.07 1.39 7.43 -2.39 -0.02 1.38 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 0.90 6.43 -2.39 -0.02 0.89 16 Total: -1.00 -65.79 316.88 1.58 -64.22 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.39 Total: 16.39 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.36 Total: -35.72 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.58 Total: -81.35 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.48 Total: -9.99 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -65.79 1.58 -64.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170170987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.633 kcal (2) G-P(sol) polarization free energy of solvation -65.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds