Wall clock time and date at job start Sun Mar 29 2020 22:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47200 * 2 1 4 4 H 1.09003 * 109.48000 * 55.02440 * 3 2 1 5 5 C 1.53090 * 109.48739 * 175.05258 * 3 2 1 6 6 C 1.53185 * 109.16488 * 177.59868 * 5 3 2 7 7 H 1.09000 * 109.61052 * 62.92938 * 6 5 3 8 8 N 1.46893 * 109.54593 * 183.15233 * 6 5 3 9 9 C 1.46901 * 111.00249 * 204.55608 * 8 6 5 10 10 C 1.52996 * 109.47195 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 89.99746 * 16 14 12 18 18 H 1.48504 * 109.47104 * 209.99992 * 16 14 12 19 19 H 1.48495 * 109.47249 * 329.99739 * 16 14 12 20 20 C 1.53182 * 109.03138 * 303.02149 * 6 5 3 21 21 C 1.53090 * 109.16415 * 56.97982 * 20 6 5 22 22 O 1.42899 * 109.48297 * 294.99898 * 3 2 1 23 23 H 1.08995 * 109.47835 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46760 * 299.99772 * 1 2 3 25 25 H 1.08998 * 109.47522 * 59.99510 * 1 2 3 26 26 H 1.09005 * 109.46760 * 240.00228 * 2 1 3 27 27 H 1.09002 * 109.46890 * 120.00136 * 2 1 3 28 28 H 1.09003 * 109.52598 * 57.69083 * 5 3 2 29 29 H 1.08994 * 109.52569 * 297.50229 * 5 3 2 30 30 H 1.00905 * 111.00118 * 328.51580 * 8 6 5 31 31 H 1.08992 * 109.46788 * 59.99832 * 9 8 6 32 32 H 1.08996 * 109.46661 * 300.00135 * 9 8 6 33 33 H 1.09001 * 109.47372 * 60.00105 * 10 9 8 34 34 H 1.09004 * 109.47108 * 299.99849 * 10 9 8 35 35 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 36 36 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.51955 * 176.88464 * 20 6 5 39 39 H 1.08994 * 109.52041 * 297.00584 * 20 6 5 40 40 H 1.08997 * 109.48126 * 62.37581 * 21 20 6 41 41 H 1.08998 * 109.47916 * 182.40706 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 0.8420 5 6 3.5658 1.4447 0.1245 6 6 4.0733 2.8887 0.0634 7 1 3.6810 3.4505 0.9111 8 7 5.5416 2.8959 0.1062 9 6 6.0470 4.1741 0.6247 10 6 7.5763 4.1438 0.6538 11 6 8.1026 5.4752 1.1932 12 6 9.6091 5.4452 1.2224 13 1 10.1381 4.5646 0.8891 14 6 10.3118 6.5418 1.6746 15 7 9.6675 7.6139 2.0810 16 14 12.1791 6.5048 1.7101 17 1 12.7089 7.0093 0.4179 18 1 12.6703 7.3653 2.8163 19 1 12.6427 5.1104 1.9245 20 6 3.5955 3.5312 -1.2426 21 6 2.0686 3.4484 -1.3142 22 8 1.6621 2.0816 -1.2210 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.9991 0.8714 -0.6952 29 1 3.8544 0.9972 1.0755 30 1 5.8913 2.1213 0.6502 31 1 5.6671 4.3323 1.6340 32 1 5.7122 4.9859 -0.0209 33 1 7.9559 3.9857 -0.3557 34 1 7.9115 3.3318 1.2992 35 1 7.7231 5.6337 2.2027 36 1 7.7675 6.2869 0.5475 37 1 10.1620 8.3855 2.3988 38 1 3.9053 4.5759 -1.2691 39 1 4.0302 3.0008 -2.0897 40 1 1.6348 4.0138 -0.4894 41 1 1.7259 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170170989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:02 Heat of formation + Delta-G solvation = -82.521397 kcal Electronic energy + Delta-G solvation = -17336.810552 eV Core-core repulsion = 14636.125330 eV Total energy + Delta-G solvation = -2700.685222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76767 -36.54305 -34.17779 -33.89947 -32.17506 -30.15569 -29.80276 -26.28619 -24.35427 -23.74299 -22.37106 -21.10876 -20.43910 -19.80694 -16.61089 -16.28518 -16.14497 -15.51998 -14.95722 -14.81334 -14.44943 -13.92840 -13.89213 -13.70007 -13.17139 -13.08935 -12.28536 -11.98522 -11.96198 -11.80952 -11.61140 -11.29900 -11.27976 -11.03724 -10.82696 -10.71848 -10.56574 -10.47903 -10.29066 -9.70899 -9.67813 -9.28608 -9.03479 -8.33651 -8.19387 -5.98809 -4.00895 3.32991 3.38871 3.42582 3.62419 4.19016 4.47637 4.51899 4.74891 4.81177 4.93765 5.02191 5.11851 5.18353 5.23997 5.36851 5.37249 5.52919 5.55697 5.59651 5.71487 5.77642 5.79021 5.86079 5.89699 5.95878 6.08254 6.09475 6.27289 6.34860 6.72269 6.78371 7.11767 7.14371 7.35012 7.62693 7.69449 7.84345 8.01661 8.44992 9.06349 9.63101 11.12696 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.061489 B = 0.003346 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.253745 B = 8365.573149 C = 8573.041879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.055 0.945 5 C -0.151 4.151 6 C 0.085 3.915 7 H 0.041 0.959 8 N -0.686 5.686 9 C 0.059 3.941 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.144 4.144 21 C 0.063 3.937 22 O -0.379 6.379 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.338 0.662 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.621 -12.545 -3.947 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.073 0.927 5 C -0.189 4.189 6 C -0.025 4.025 7 H 0.059 0.941 8 N -0.317 5.317 9 C -0.069 4.069 10 C -0.145 4.145 11 C -0.015 4.015 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.182 4.182 21 C -0.015 4.015 22 O -0.298 6.298 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.618 -12.276 -4.670 21.975 hybrid contribution 1.089 0.289 1.267 1.696 sum -16.529 -11.987 -3.402 20.699 Atomic orbital electron populations 1.21718 0.95329 1.01410 1.02246 1.21545 0.96608 0.94422 1.02759 1.22095 0.93233 0.93974 0.87184 0.92670 1.22421 0.96198 0.97250 1.03079 1.21515 0.89051 0.95144 0.96786 0.94145 1.60580 1.06432 1.05836 1.58849 1.22172 0.97559 0.90440 0.96751 1.21623 0.91217 1.00695 1.00945 1.19064 0.95589 0.90936 0.95959 1.21262 0.91877 1.00156 1.42398 0.92667 1.25035 0.98502 0.95584 0.95442 1.69973 1.35403 1.04475 1.43812 0.86587 0.85803 0.77946 0.77633 1.20639 1.21253 1.19882 1.22213 0.95257 1.02040 0.98728 1.22588 0.94199 0.82787 1.01884 1.87895 1.78560 1.24869 1.38474 0.92856 0.93022 0.91921 0.91024 0.90716 0.90083 0.91161 0.84382 0.95851 0.91541 0.92554 0.93680 0.96854 0.96611 0.93042 0.90836 0.90317 0.93511 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.16 0.36 -0.81 16 2 C -0.12 -0.97 5.64 -26.73 -0.15 -1.12 16 3 C 0.09 0.94 2.64 -26.69 -0.07 0.87 16 4 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.61 4.69 -26.59 -0.12 -1.74 16 6 C 0.09 1.08 2.58 -67.53 -0.17 0.90 16 7 H 0.04 0.53 7.81 -51.93 -0.41 0.13 16 8 N -0.69 -10.18 6.31 -106.53 -0.67 -10.85 16 9 C 0.06 1.04 5.49 -3.83 -0.02 1.02 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.14 -1.75 5.62 -26.59 -0.15 -1.90 16 21 C 0.06 0.66 6.84 37.20 0.25 0.91 16 22 O -0.38 -4.37 9.94 -35.23 -0.35 -4.72 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.34 4.69 8.37 -39.29 -0.33 4.36 16 31 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 32 H 0.07 1.20 7.51 -51.93 -0.39 0.81 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 0.93 7.55 -51.93 -0.39 0.54 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -30.48 325.82 -8.96 -39.45 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.80 Total: -1.51 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.77 Total: -17.60 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.06 Total: -37.46 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.35 Total: -4.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.48 -8.96 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170170989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.076 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds