Wall clock time and date at job start Sun Mar 29 2020 22:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47200 * 2 1 4 4 H 1.09003 * 109.48000 * 55.02440 * 3 2 1 5 5 C 1.53090 * 109.48739 * 175.05258 * 3 2 1 6 6 C 1.53185 * 109.16488 * 177.59868 * 5 3 2 7 7 H 1.09000 * 109.61052 * 62.92938 * 6 5 3 8 8 N 1.46893 * 109.54593 * 183.15233 * 6 5 3 9 9 C 1.46901 * 111.00249 * 204.55608 * 8 6 5 10 10 C 1.52996 * 109.47195 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 89.99746 * 16 14 12 18 18 H 1.48504 * 109.47104 * 209.99992 * 16 14 12 19 19 H 1.48495 * 109.47249 * 329.99739 * 16 14 12 20 20 C 1.53182 * 109.03138 * 303.02149 * 6 5 3 21 21 C 1.53090 * 109.16415 * 56.97982 * 20 6 5 22 22 O 1.42899 * 109.48297 * 294.99898 * 3 2 1 23 23 H 1.08995 * 109.47835 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46760 * 299.99772 * 1 2 3 25 25 H 1.08998 * 109.47522 * 59.99510 * 1 2 3 26 26 H 1.09005 * 109.46760 * 240.00228 * 2 1 3 27 27 H 1.09002 * 109.46890 * 120.00136 * 2 1 3 28 28 H 1.09003 * 109.52598 * 57.69083 * 5 3 2 29 29 H 1.08994 * 109.52569 * 297.50229 * 5 3 2 30 30 H 1.00905 * 111.00118 * 328.51580 * 8 6 5 31 31 H 1.08992 * 109.46788 * 59.99832 * 9 8 6 32 32 H 1.08996 * 109.46661 * 300.00135 * 9 8 6 33 33 H 1.09001 * 109.47372 * 60.00105 * 10 9 8 34 34 H 1.09004 * 109.47108 * 299.99849 * 10 9 8 35 35 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 36 36 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.51955 * 176.88464 * 20 6 5 39 39 H 1.08994 * 109.52041 * 297.00584 * 20 6 5 40 40 H 1.08997 * 109.48126 * 62.37581 * 21 20 6 41 41 H 1.08998 * 109.47916 * 182.40706 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 0.8420 5 6 3.5658 1.4447 0.1245 6 6 4.0733 2.8887 0.0634 7 1 3.6810 3.4505 0.9111 8 7 5.5416 2.8959 0.1062 9 6 6.0470 4.1741 0.6247 10 6 7.5763 4.1438 0.6538 11 6 8.1026 5.4752 1.1932 12 6 9.6091 5.4452 1.2224 13 1 10.1381 4.5646 0.8891 14 6 10.3118 6.5418 1.6746 15 7 9.6675 7.6139 2.0810 16 14 12.1791 6.5048 1.7101 17 1 12.7089 7.0093 0.4179 18 1 12.6703 7.3653 2.8163 19 1 12.6427 5.1104 1.9245 20 6 3.5955 3.5312 -1.2426 21 6 2.0686 3.4484 -1.3142 22 8 1.6621 2.0816 -1.2210 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.9991 0.8714 -0.6952 29 1 3.8544 0.9972 1.0755 30 1 5.8913 2.1213 0.6502 31 1 5.6671 4.3323 1.6340 32 1 5.7122 4.9859 -0.0209 33 1 7.9559 3.9857 -0.3557 34 1 7.9115 3.3318 1.2992 35 1 7.7231 5.6337 2.2027 36 1 7.7675 6.2869 0.5475 37 1 10.1620 8.3855 2.3988 38 1 3.9053 4.5759 -1.2691 39 1 4.0302 3.0008 -2.0897 40 1 1.6348 4.0138 -0.4894 41 1 1.7259 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170170989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:02 Heat of formation + Delta-G solvation = -101.596591 kcal Electronic energy + Delta-G solvation = -17337.637714 eV Core-core repulsion = 14636.125330 eV Total energy + Delta-G solvation = -2701.512384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66097 -37.80590 -35.73244 -34.89324 -33.90666 -31.55054 -30.74532 -28.02108 -25.53674 -24.64553 -23.94617 -22.02820 -21.89048 -21.00881 -18.49787 -17.42834 -17.07702 -16.73014 -16.54761 -16.01385 -15.74855 -15.36963 -14.73737 -14.54732 -14.48261 -14.11883 -13.93833 -13.52236 -13.45680 -12.83701 -12.73330 -12.64588 -12.49327 -12.29655 -12.28307 -12.04155 -11.78796 -11.58307 -11.53059 -11.44334 -11.25804 -11.02080 -10.56879 -10.47264 -9.42506 -8.21634 -6.32906 1.39349 1.40976 1.52152 2.40034 2.83175 3.09081 3.11483 3.64639 3.88484 3.94576 4.16110 4.17665 4.22972 4.25971 4.34220 4.41215 4.45451 4.57318 4.67117 4.71541 4.74305 4.85033 4.91305 4.94976 5.07593 5.11588 5.12896 5.13844 5.21317 5.25529 5.33968 5.46598 5.50546 5.72699 5.83975 6.04975 6.25422 6.30281 6.46457 6.84010 7.36528 8.90402 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.061489 B = 0.003346 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.253745 B = 8365.573149 C = 8573.041879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.091 3.909 4 H 0.059 0.941 5 C -0.144 4.144 6 C 0.083 3.917 7 H 0.039 0.961 8 N -0.687 5.687 9 C 0.074 3.926 10 C -0.092 4.092 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.142 4.142 21 C 0.065 3.935 22 O -0.391 6.391 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.346 0.654 31 H 0.022 0.978 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 -13.878 -3.885 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.182 4.182 6 C -0.027 4.027 7 H 0.057 0.943 8 N -0.318 5.318 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.012 4.012 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.181 4.181 21 C -0.012 4.012 22 O -0.310 6.310 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.165 0.835 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.612 -13.630 -4.614 22.744 hybrid contribution 1.044 0.713 1.246 1.775 sum -16.569 -12.918 -3.368 21.277 Atomic orbital electron populations 1.21700 0.94900 1.02097 1.01827 1.21566 0.96967 0.93296 1.03325 1.22225 0.92680 0.94980 0.86835 0.92268 1.22366 0.96652 0.95558 1.03604 1.21601 0.87437 0.96753 0.96895 0.94342 1.60505 1.08085 1.04616 1.58620 1.21856 0.95098 0.91869 0.96733 1.21373 0.93598 0.97786 1.00244 1.18966 0.94925 0.92967 0.94347 1.21704 0.93284 1.00570 1.42636 0.92230 1.26010 1.04128 0.95055 0.94769 1.70103 1.37656 1.05239 1.44474 0.85423 0.79011 0.78508 0.77971 1.19746 1.20614 1.18696 1.22188 0.96610 1.01223 0.98048 1.22621 0.92823 0.82745 1.03015 1.87893 1.78617 1.25233 1.39294 0.91653 0.92632 0.93129 0.91445 0.89151 0.90662 0.89766 0.83548 0.95961 0.92226 0.92980 0.93009 0.99091 0.99127 0.92732 0.91732 0.91369 0.92752 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 71.98 0.71 -1.33 16 2 C -0.11 -1.69 5.64 30.59 0.17 -1.51 16 3 C 0.09 1.66 2.64 30.62 0.08 1.74 16 4 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.14 -2.81 4.69 30.69 0.14 -2.67 16 6 C 0.08 2.00 2.58 45.04 0.12 2.12 16 7 H 0.04 0.97 7.81 -2.39 -0.02 0.95 16 8 N -0.69 -19.71 6.31 -490.97 -3.10 -22.81 16 9 C 0.07 2.58 5.49 86.30 0.47 3.05 16 10 C -0.09 -3.89 5.41 30.59 0.17 -3.72 16 11 C 0.03 1.38 4.97 29.85 0.15 1.53 16 12 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 16 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.14 -3.37 5.62 30.69 0.17 -3.19 16 21 C 0.06 1.29 6.84 72.01 0.49 1.78 16 22 O -0.39 -8.46 9.94 -148.98 -1.48 -9.95 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 26 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.35 9.05 8.37 -89.69 -0.75 8.30 16 31 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 32 H 0.06 2.17 7.51 -2.39 -0.02 2.15 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.06 1.63 7.55 -2.39 -0.02 1.61 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.81 325.82 1.31 -63.49 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.21 Total: 13.14 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 3.37 Total: -33.30 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.81 Total: -80.21 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.48 Total: -9.95 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.81 1.31 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170170989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.103 kcal (2) G-P(sol) polarization free energy of solvation -64.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds