Wall clock time and date at job start Sun Mar 29 2020 22:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 H 1.08997 * 109.48223 * 305.02454 * 3 2 1 5 5 C 1.53098 * 109.48010 * 184.99784 * 3 2 1 6 6 C 1.53177 * 109.16352 * 182.39798 * 5 3 2 7 7 H 1.09001 * 109.54177 * 297.02231 * 6 5 3 8 8 N 1.46895 * 109.54030 * 176.84774 * 6 5 3 9 9 C 1.46906 * 110.99789 * 154.99913 * 8 6 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99908 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99919 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99891 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46856 * 90.00518 * 16 14 12 18 18 H 1.48503 * 109.46872 * 210.00129 * 16 14 12 19 19 H 1.48501 * 109.47227 * 330.00538 * 16 14 12 20 20 C 1.53178 * 109.03376 * 56.98016 * 6 5 3 21 21 C 1.53079 * 109.16674 * 303.01776 * 20 6 5 22 22 O 1.42902 * 109.49158 * 65.05365 * 3 2 1 23 23 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47287 * 300.00277 * 1 2 3 25 25 H 1.09002 * 109.47013 * 60.00315 * 1 2 3 26 26 H 1.08994 * 109.47169 * 240.00367 * 2 1 3 27 27 H 1.09002 * 109.47013 * 119.99685 * 2 1 3 28 28 H 1.09000 * 109.51896 * 62.48839 * 5 3 2 29 29 H 1.09003 * 109.52285 * 302.30400 * 5 3 2 30 30 H 1.00902 * 111.00273 * 278.95436 * 8 6 5 31 31 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 32 32 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 33 33 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 34 34 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 35 35 H 1.09001 * 109.47372 * 300.00036 * 11 10 9 36 36 H 1.09004 * 109.47108 * 60.00292 * 11 10 9 37 37 H 0.96997 * 120.00191 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.52071 * 62.93095 * 20 6 5 39 39 H 1.09003 * 109.51822 * 183.11086 * 20 6 5 40 40 H 1.08996 * 109.48608 * 297.62721 * 21 20 6 41 41 H 1.08999 * 109.48278 * 177.59207 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4447 -0.1257 6 6 4.0733 2.8886 -0.0647 7 1 3.6804 3.4493 -0.9129 8 7 5.5416 2.8956 -0.1088 9 6 6.0463 4.1699 -0.6374 10 6 7.5757 4.1396 -0.6674 11 6 8.1014 5.4665 -1.2186 12 6 9.6078 5.4364 -1.2487 13 1 10.1373 4.5585 -0.9092 14 6 10.3101 6.5298 -1.7098 15 7 11.6246 6.5033 -1.7366 16 14 9.3942 8.0480 -2.2977 17 1 9.1876 8.9745 -1.1558 18 1 10.1899 8.7294 -3.3503 19 1 8.0771 7.6470 -2.8544 20 6 3.5967 3.5309 1.2417 21 6 2.0699 3.4482 1.3146 22 8 1.6632 2.0815 1.2214 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8534 0.9973 -1.0772 29 1 3.9996 0.8711 0.6934 30 1 5.9316 2.7018 0.8014 31 1 5.6657 4.3206 -1.6475 32 1 5.7120 4.9866 0.0025 33 1 7.9561 3.9892 0.3429 34 1 7.9105 3.3229 -1.3071 35 1 7.7210 5.6165 -2.2290 36 1 7.7666 6.2836 -0.5793 37 1 12.1187 7.2723 -2.0613 38 1 4.0313 2.9995 2.0885 39 1 3.9067 4.5756 1.2682 40 1 1.6354 4.0137 0.4904 41 1 1.7281 3.8654 2.2619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170170991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:04 Heat of formation + Delta-G solvation = -79.386525 kcal Electronic energy + Delta-G solvation = -17393.630486 eV Core-core repulsion = 14693.081202 eV Total energy + Delta-G solvation = -2700.549284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84899 -36.68226 -34.20968 -33.97700 -32.20295 -30.28041 -29.98846 -26.62133 -24.43589 -23.62556 -22.21134 -21.18364 -20.69806 -19.84190 -16.74149 -16.66256 -16.26610 -15.46005 -14.99261 -14.67724 -14.18949 -14.13455 -13.93562 -13.79941 -13.46462 -12.98328 -12.55351 -12.21984 -11.95110 -11.86322 -11.76564 -11.43675 -11.32243 -11.11030 -11.02262 -10.88966 -10.75091 -10.42708 -9.98663 -9.79680 -9.72772 -9.45866 -9.16396 -8.53009 -8.23003 -6.03200 -4.00938 3.30417 3.37823 3.41621 3.57458 4.13552 4.45777 4.59716 4.62831 4.73695 4.89215 4.95558 5.01667 5.11860 5.21801 5.27415 5.30660 5.48413 5.51485 5.57179 5.65646 5.68893 5.72151 5.76710 5.83601 5.90922 6.01948 6.05820 6.13920 6.16612 6.55294 6.58060 6.91318 7.06569 7.20644 7.35373 7.43788 7.55557 7.81268 8.56111 9.02432 9.59376 11.10444 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051945 B = 0.003599 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.903103 B = 7778.351327 C = 7975.092669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.056 0.944 5 C -0.136 4.136 6 C 0.085 3.915 7 H 0.075 0.925 8 N -0.684 5.684 9 C 0.057 3.943 10 C -0.100 4.100 11 C -0.013 4.013 12 C -0.519 4.519 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.187 4.187 21 C 0.067 3.933 22 O -0.380 6.380 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.340 0.660 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 -9.375 4.528 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.031 3.969 4 H 0.074 0.926 5 C -0.175 4.175 6 C -0.025 4.025 7 H 0.093 0.907 8 N -0.313 5.313 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.050 4.050 12 C -0.557 4.557 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.226 4.226 21 C -0.010 4.010 22 O -0.299 6.299 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.329 -9.686 3.997 24.665 hybrid contribution -0.222 1.757 0.262 1.790 sum -22.551 -7.929 4.259 24.281 Atomic orbital electron populations 1.21723 0.95412 1.01408 1.02174 1.21538 0.96493 0.94416 1.02838 1.22188 0.93837 0.93941 0.86888 0.92606 1.22216 0.94718 0.97009 1.03537 1.21605 0.88994 0.95768 0.96155 0.90676 1.60616 1.04902 1.34723 1.31083 1.22184 0.97573 0.88431 0.99014 1.21447 0.91033 1.00230 1.01059 1.19540 0.97130 0.92698 0.95676 1.21159 0.89523 1.02394 1.42631 0.91021 1.25048 0.94731 0.98573 0.95261 1.69915 1.05977 1.30855 1.47634 0.86763 0.80302 0.83298 0.78810 1.20380 1.21388 1.19055 1.22967 0.97456 1.02249 0.99961 1.22461 0.93564 0.83132 1.01860 1.87901 1.78618 1.24617 1.38741 0.92856 0.92022 0.93015 0.90541 0.91110 0.90268 0.91011 0.84178 0.91583 0.95812 0.93062 0.91930 0.96652 0.97338 0.92767 0.90842 0.90886 0.93350 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.96 5.64 -26.73 -0.15 -1.11 16 3 C 0.09 0.87 2.64 -26.68 -0.07 0.80 16 4 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.14 -1.44 5.03 -26.59 -0.13 -1.57 16 6 C 0.09 1.00 2.55 -67.53 -0.17 0.83 16 7 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 8 N -0.68 -9.54 6.26 -106.53 -0.67 -10.21 16 9 C 0.06 0.92 5.49 -3.82 -0.02 0.90 16 10 C -0.10 -2.00 5.41 -26.73 -0.14 -2.14 16 11 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 12 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 13 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 16 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.19 -1.97 5.39 -26.60 -0.14 -2.12 16 21 C 0.07 0.65 6.84 37.20 0.25 0.90 16 22 O -0.38 -4.15 9.94 -35.23 -0.35 -4.50 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.34 4.55 8.44 -39.29 -0.33 4.22 16 31 H 0.07 1.08 8.06 -51.93 -0.42 0.67 16 32 H 0.02 0.38 7.54 -51.93 -0.39 -0.02 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.07 0.79 8.09 -51.92 -0.42 0.37 16 39 H 0.07 0.79 7.58 -51.93 -0.39 0.40 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -30.75 322.32 -8.59 -39.34 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.77 Total: -0.96 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.76 Total: -18.31 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.11 Total: -37.74 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.35 Total: -4.50 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.75 -8.59 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170170991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.048 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds