Wall clock time and date at job start Sun Mar 29 2020 22:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 H 1.08997 * 109.48223 * 305.02454 * 3 2 1 5 5 C 1.53098 * 109.48010 * 184.99784 * 3 2 1 6 6 C 1.53177 * 109.16352 * 182.39798 * 5 3 2 7 7 H 1.09001 * 109.54177 * 297.02231 * 6 5 3 8 8 N 1.46895 * 109.54030 * 176.84774 * 6 5 3 9 9 C 1.46906 * 110.99789 * 154.99913 * 8 6 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99908 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99919 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99891 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46856 * 90.00518 * 16 14 12 18 18 H 1.48503 * 109.46872 * 210.00129 * 16 14 12 19 19 H 1.48501 * 109.47227 * 330.00538 * 16 14 12 20 20 C 1.53178 * 109.03376 * 56.98016 * 6 5 3 21 21 C 1.53079 * 109.16674 * 303.01776 * 20 6 5 22 22 O 1.42902 * 109.49158 * 65.05365 * 3 2 1 23 23 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47287 * 300.00277 * 1 2 3 25 25 H 1.09002 * 109.47013 * 60.00315 * 1 2 3 26 26 H 1.08994 * 109.47169 * 240.00367 * 2 1 3 27 27 H 1.09002 * 109.47013 * 119.99685 * 2 1 3 28 28 H 1.09000 * 109.51896 * 62.48839 * 5 3 2 29 29 H 1.09003 * 109.52285 * 302.30400 * 5 3 2 30 30 H 1.00902 * 111.00273 * 278.95436 * 8 6 5 31 31 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 32 32 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 33 33 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 34 34 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 35 35 H 1.09001 * 109.47372 * 300.00036 * 11 10 9 36 36 H 1.09004 * 109.47108 * 60.00292 * 11 10 9 37 37 H 0.96997 * 120.00191 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.52071 * 62.93095 * 20 6 5 39 39 H 1.09003 * 109.51822 * 183.11086 * 20 6 5 40 40 H 1.08996 * 109.48608 * 297.62721 * 21 20 6 41 41 H 1.08999 * 109.48278 * 177.59207 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4447 -0.1257 6 6 4.0733 2.8886 -0.0647 7 1 3.6804 3.4493 -0.9129 8 7 5.5416 2.8956 -0.1088 9 6 6.0463 4.1699 -0.6374 10 6 7.5757 4.1396 -0.6674 11 6 8.1014 5.4665 -1.2186 12 6 9.6078 5.4364 -1.2487 13 1 10.1373 4.5585 -0.9092 14 6 10.3101 6.5298 -1.7098 15 7 11.6246 6.5033 -1.7366 16 14 9.3942 8.0480 -2.2977 17 1 9.1876 8.9745 -1.1558 18 1 10.1899 8.7294 -3.3503 19 1 8.0771 7.6470 -2.8544 20 6 3.5967 3.5309 1.2417 21 6 2.0699 3.4482 1.3146 22 8 1.6632 2.0815 1.2214 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8534 0.9973 -1.0772 29 1 3.9996 0.8711 0.6934 30 1 5.9316 2.7018 0.8014 31 1 5.6657 4.3206 -1.6475 32 1 5.7120 4.9866 0.0025 33 1 7.9561 3.9892 0.3429 34 1 7.9105 3.3229 -1.3071 35 1 7.7210 5.6165 -2.2290 36 1 7.7666 6.2836 -0.5793 37 1 12.1187 7.2723 -2.0613 38 1 4.0313 2.9995 2.0885 39 1 3.9067 4.5756 1.2682 40 1 1.6354 4.0137 0.4904 41 1 1.7281 3.8654 2.2619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170170991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:04 Heat of formation + Delta-G solvation = -99.419223 kcal Electronic energy + Delta-G solvation = -17394.499169 eV Core-core repulsion = 14693.081202 eV Total energy + Delta-G solvation = -2701.417967 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67682 -37.83712 -35.72635 -34.86685 -34.01020 -31.71313 -30.74214 -28.25803 -25.44661 -24.47529 -23.70106 -22.11502 -21.91550 -21.11769 -18.91399 -17.43364 -17.12549 -16.67744 -16.32531 -15.90914 -15.64275 -15.18317 -14.92041 -14.75842 -14.54631 -14.35118 -13.82430 -13.69415 -13.52565 -12.83557 -12.67288 -12.65103 -12.49451 -12.24601 -12.10705 -11.86604 -11.79754 -11.72395 -11.65259 -11.45449 -11.33250 -11.06183 -10.77367 -10.47121 -9.32535 -8.30268 -6.34843 1.35020 1.37557 1.49766 2.35778 2.84206 3.04885 3.11020 3.74667 3.81232 3.97104 4.13120 4.17125 4.20439 4.25587 4.33314 4.40984 4.47476 4.54778 4.64871 4.74501 4.78330 4.81869 4.89985 4.93555 4.98012 5.08522 5.09501 5.14142 5.17224 5.21035 5.31691 5.47118 5.50898 5.59785 5.65570 6.09715 6.28668 6.31780 6.44108 6.73662 7.29810 8.86887 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051945 B = 0.003599 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.903103 B = 7778.351327 C = 7975.092669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.061 0.939 5 C -0.131 4.131 6 C 0.085 3.915 7 H 0.075 0.925 8 N -0.690 5.690 9 C 0.071 3.929 10 C -0.091 4.091 11 C -0.009 4.009 12 C -0.535 4.535 13 H 0.028 0.972 14 C 0.000 4.000 15 N -0.953 5.953 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.181 4.181 21 C 0.066 3.934 22 O -0.393 6.393 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.343 0.657 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.267 0.733 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.007 -8.641 4.266 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.032 3.968 4 H 0.079 0.921 5 C -0.169 4.169 6 C -0.025 4.025 7 H 0.093 0.907 8 N -0.319 5.319 9 C -0.058 4.058 10 C -0.129 4.129 11 C -0.047 4.047 12 C -0.573 4.573 13 H 0.047 0.953 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.168 1.168 20 C -0.221 4.221 21 C -0.011 4.011 22 O -0.312 6.312 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.917 -8.973 3.747 26.747 hybrid contribution 0.648 1.430 0.378 1.615 sum -24.269 -7.543 4.125 25.746 Atomic orbital electron populations 1.21698 0.94867 1.02043 1.01849 1.21563 0.96955 0.93578 1.03161 1.22250 0.93043 0.94766 0.86726 0.92103 1.22161 0.95448 0.96087 1.03221 1.21660 0.87353 0.96678 0.96832 0.90689 1.60557 1.06533 1.33411 1.31432 1.21905 0.94415 0.89868 0.99629 1.21272 0.94023 0.97578 1.00071 1.19483 0.93709 0.95177 0.96360 1.21533 0.92352 1.01094 1.42345 0.95323 1.26097 0.95606 1.02554 0.95351 1.70077 1.08068 1.32290 1.48994 0.85583 0.79526 0.78417 0.78650 1.19033 1.20956 1.16833 1.22894 0.98236 1.01938 0.98992 1.22553 0.92755 0.82802 1.02986 1.87897 1.78714 1.25273 1.39326 0.91792 0.93074 0.92563 0.89400 0.91625 0.90343 0.91643 0.83875 0.91342 0.94881 0.93561 0.93378 0.96154 0.96271 0.92471 0.91251 0.90901 0.92514 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.81 71.98 0.71 -1.29 16 2 C -0.12 -1.71 5.64 30.59 0.17 -1.54 16 3 C 0.09 1.58 2.64 30.63 0.08 1.66 16 4 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.13 -2.56 5.03 30.69 0.15 -2.40 16 6 C 0.08 1.83 2.55 45.04 0.12 1.94 16 7 H 0.07 1.64 7.80 -2.39 -0.02 1.62 16 8 N -0.69 -18.21 6.26 -490.95 -3.07 -21.28 16 9 C 0.07 2.17 5.49 86.30 0.47 2.64 16 10 C -0.09 -3.61 5.41 30.59 0.17 -3.45 16 11 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 12 C -0.54 -31.68 9.66 25.60 0.25 -31.43 16 13 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 14 C 0.00 0.02 5.47 84.66 0.46 0.48 16 15 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 16 Si 0.96 44.61 27.47 68.60 1.88 46.49 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 20 C -0.18 -3.47 5.39 30.68 0.17 -3.30 16 21 C 0.07 1.13 6.84 72.01 0.49 1.62 16 22 O -0.39 -7.87 9.94 -148.98 -1.48 -9.35 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.80 7.83 -2.39 -0.02 0.78 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.34 8.77 8.44 -89.69 -0.76 8.01 16 31 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 32 H 0.03 0.96 7.54 -2.38 -0.02 0.94 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 36 H 0.02 0.86 7.57 -2.38 -0.02 0.85 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.03 16 38 H 0.07 1.39 8.09 -2.38 -0.02 1.37 16 39 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -66.26 322.32 1.14 -65.12 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.15 Total: 15.04 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.36 Total: -35.38 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.77 Total: -81.93 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.48 Total: -9.35 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -66.26 1.14 -65.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170170991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.299 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds