Wall clock time and date at job start Sun Mar 29 2020 22:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.09001 * 109.47953 * 54.97914 * 3 2 1 5 5 C 1.53094 * 109.47825 * 174.99964 * 3 2 1 6 6 C 1.53180 * 109.21769 * 62.35137 * 5 3 2 7 7 H 1.09000 * 109.54347 * 297.14677 * 6 5 3 8 8 N 1.46894 * 109.54410 * 176.88014 * 6 5 3 9 9 C 1.46900 * 111.00328 * 56.04714 * 8 6 5 10 10 C 1.53001 * 109.46841 * 58.95617 * 9 8 6 11 11 C 1.46903 * 111.00116 * 180.02562 * 8 6 5 12 12 C 1.50697 * 109.47385 * 170.75630 * 11 8 6 13 13 H 1.08000 * 119.99793 * 354.98606 * 12 11 8 14 14 C 1.37874 * 120.00099 * 174.98468 * 12 11 8 15 15 N 1.31517 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00218 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46802 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47156 * 119.99668 * 16 14 12 19 19 H 1.48501 * 109.47237 * 240.00021 * 16 14 12 20 20 C 1.53309 * 108.96113 * 56.95463 * 6 5 3 21 21 C 1.53096 * 109.19873 * 303.05635 * 20 6 5 22 22 O 1.42901 * 109.41533 * 57.60760 * 21 20 6 23 23 H 1.08998 * 109.47226 * 300.00153 * 1 2 3 24 24 H 1.09002 * 109.47010 * 60.00220 * 1 2 3 25 25 H 1.09004 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47226 * 239.99847 * 2 1 3 27 27 H 1.09002 * 109.47010 * 119.99780 * 2 1 3 28 28 H 1.09004 * 109.52133 * 182.29295 * 5 3 2 29 29 H 1.09005 * 109.52316 * 302.41672 * 5 3 2 30 30 H 1.08998 * 109.47176 * 178.95593 * 9 8 6 31 31 H 1.09006 * 109.47150 * 298.95538 * 9 8 6 32 32 H 1.08998 * 109.46952 * 302.49488 * 10 9 8 33 33 H 1.08998 * 109.46949 * 62.49547 * 10 9 8 34 34 H 1.08997 * 109.46975 * 182.49597 * 10 9 8 35 35 H 1.09001 * 109.46555 * 290.75424 * 11 8 6 36 36 H 1.08996 * 109.47275 * 50.75003 * 11 8 6 37 37 H 0.97005 * 119.99994 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.50596 * 183.14126 * 20 6 5 39 39 H 1.09002 * 109.56332 * 63.00422 * 20 6 5 40 40 H 1.09003 * 109.47566 * 297.63094 * 21 20 6 41 41 H 1.08999 * 109.48241 * 177.59319 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8416 5 6 3.5657 1.4446 0.1258 6 6 4.1728 0.7371 -1.0896 7 1 3.8517 -0.3044 -1.1033 8 7 5.6384 0.8003 -1.0137 9 6 6.1253 0.2297 0.2493 10 6 5.6696 -1.2266 0.3601 11 6 6.2547 0.1304 -2.1667 12 6 7.7358 0.4082 -2.1765 13 1 8.1629 1.0858 -1.4521 14 6 8.5457 -0.2026 -3.1103 15 7 8.0256 -1.0282 -3.9922 16 14 10.3817 0.1411 -3.1220 17 1 10.7131 1.0978 -2.0356 18 1 11.1242 -1.1272 -2.9089 19 1 10.7674 0.7266 -4.4311 20 6 3.6925 1.4384 -2.3655 21 6 2.1618 1.4366 -2.3952 22 8 1.6632 2.0814 -1.2215 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9264 2.4724 0.1668 29 1 3.8569 0.9198 1.0357 30 1 7.2143 0.2723 0.2714 31 1 5.7223 0.8012 1.0855 32 1 4.5826 -1.2732 0.2936 33 1 6.1085 -1.8074 -0.4511 34 1 5.9929 -1.6367 1.3169 35 1 6.0871 -0.9442 -2.0948 36 1 5.8083 0.5069 -3.0870 37 1 8.5953 -1.4577 -4.6494 38 1 4.0743 0.9081 -3.2381 39 1 4.0557 2.4660 -2.3760 40 1 1.8001 0.4088 -2.4267 41 1 1.8147 1.9716 -3.2792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170224728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:06 Heat of formation + Delta-G solvation = -55.906832 kcal Electronic energy + Delta-G solvation = -18835.321707 eV Core-core repulsion = 16135.790579 eV Total energy + Delta-G solvation = -2699.531128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88621 -37.00397 -33.38395 -32.77267 -31.83304 -30.07802 -28.99831 -26.50821 -24.10488 -23.90153 -22.30938 -22.22089 -19.85372 -18.44352 -16.57683 -16.03348 -15.79347 -15.27684 -14.77767 -14.43218 -13.95934 -13.92537 -13.50309 -13.11276 -12.73008 -12.70241 -12.07998 -12.00146 -11.85217 -11.68447 -11.35533 -11.23119 -11.01701 -10.87283 -10.77136 -10.73573 -10.56911 -10.13739 -10.04267 -9.73848 -9.53210 -9.21361 -9.07399 -8.41140 -7.13258 -6.02061 -4.02367 3.30670 3.38382 3.43295 4.05093 4.42854 4.83808 4.84173 5.06270 5.10898 5.23192 5.33381 5.39241 5.50539 5.58108 5.64180 5.72724 5.82091 5.82831 5.90474 5.94745 5.97568 5.97975 6.11497 6.19921 6.28093 6.31514 6.40139 6.46498 6.59188 6.71631 6.80157 6.93268 7.36149 7.43830 7.46714 7.83739 8.13951 8.24505 8.60056 9.06330 9.61711 11.08720 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037660 B = 0.006046 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.319445 B = 4630.233978 C = 4887.509653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.160 4.160 3 C 0.093 3.907 4 H 0.096 0.904 5 C -0.143 4.143 6 C 0.085 3.915 7 H 0.035 0.965 8 N -0.531 5.531 9 C 0.059 3.941 10 C -0.188 4.188 11 C 0.186 3.814 12 C -0.503 4.503 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.284 1.284 20 C -0.148 4.148 21 C 0.060 3.940 22 O -0.378 6.378 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.045 0.955 35 H -0.001 1.001 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 1.780 7.397 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.035 3.965 4 H 0.114 0.886 5 C -0.181 4.181 6 C -0.024 4.024 7 H 0.053 0.947 8 N -0.254 5.254 9 C -0.069 4.069 10 C -0.247 4.247 11 C 0.061 3.939 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.186 4.186 21 C -0.017 4.017 22 O -0.297 6.297 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.016 0.984 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.070 2.336 7.219 14.256 hybrid contribution 1.067 -1.144 -0.134 1.570 sum -11.002 1.192 7.085 13.140 Atomic orbital electron populations 1.21697 0.95502 1.01111 1.02062 1.22208 0.96557 0.97920 1.03033 1.22201 0.94181 0.92689 0.87412 0.88603 1.22303 0.94498 1.02389 0.98866 1.21545 0.90378 0.96591 0.93917 0.94709 1.62360 1.02699 1.56689 1.03696 1.21992 1.01421 0.91518 0.91980 1.22390 1.00425 1.00271 1.01571 1.19815 0.94380 0.92176 0.87522 1.21208 0.92010 1.25772 1.15187 0.91933 1.24973 0.98786 0.95223 0.95629 1.69968 1.35413 1.30007 1.18603 0.86488 0.85343 0.77952 0.77933 1.19678 1.21185 1.21061 1.22298 0.94725 1.02709 0.98864 1.22613 0.93883 0.97411 0.87832 1.87917 1.74698 1.53358 1.13741 0.92953 0.92267 0.93144 0.91021 0.91265 0.90532 0.91253 0.90066 0.92867 0.93699 0.91613 0.93565 0.98359 0.95199 0.93073 0.90322 0.90530 0.93355 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.81 37.16 0.36 -1.16 16 2 C -0.16 -1.91 4.74 -26.73 -0.13 -2.04 16 3 C 0.09 1.23 3.29 -26.68 -0.09 1.14 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.14 -2.13 4.44 -26.59 -0.12 -2.25 16 6 C 0.08 1.50 1.17 -67.46 -0.08 1.42 16 7 H 0.04 0.64 5.07 -51.93 -0.26 0.38 16 8 N -0.53 -11.23 4.58 -227.78 -1.04 -12.28 16 9 C 0.06 1.14 5.40 -3.82 -0.02 1.12 16 10 C -0.19 -3.35 9.24 37.16 0.34 -3.01 16 11 C 0.19 4.74 4.36 -4.98 -0.02 4.71 16 12 C -0.50 -13.99 8.33 -34.44 -0.29 -14.28 16 13 H 0.06 1.74 7.28 -52.49 -0.38 1.36 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.15 -2.55 5.13 -26.52 -0.14 -2.68 16 21 C 0.06 0.85 6.52 37.21 0.24 1.09 16 22 O -0.38 -5.57 10.13 -35.23 -0.36 -5.92 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.65 7.83 -51.93 -0.41 0.25 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.95 4.98 -51.93 -0.26 0.69 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.98 6.57 -51.93 -0.34 0.64 16 30 H 0.08 1.72 6.78 -51.93 -0.35 1.37 16 31 H 0.05 0.90 6.38 -51.93 -0.33 0.57 16 32 H 0.04 0.74 6.34 -51.93 -0.33 0.41 16 33 H 0.06 1.36 6.54 -51.93 -0.34 1.03 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.00 -0.04 6.26 -51.93 -0.32 -0.36 16 36 H 0.03 0.81 5.96 -51.93 -0.31 0.50 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 1.48 6.42 -51.92 -0.33 1.14 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.05 0.66 6.23 -51.93 -0.32 0.33 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -29.16 302.81 -7.96 -37.11 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.81 Total: 0.23 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.02 Total: -14.49 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.31 Total: -38.11 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.36 Total: -5.92 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.16 -7.96 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170224728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.794 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds