Wall clock time and date at job start Sun Mar 29 2020 22:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.09001 * 109.47953 * 54.97914 * 3 2 1 5 5 C 1.53094 * 109.47825 * 174.99964 * 3 2 1 6 6 C 1.53180 * 109.21769 * 62.35137 * 5 3 2 7 7 H 1.09000 * 109.54347 * 297.14677 * 6 5 3 8 8 N 1.46894 * 109.54410 * 176.88014 * 6 5 3 9 9 C 1.46900 * 111.00328 * 56.04714 * 8 6 5 10 10 C 1.53001 * 109.46841 * 58.95617 * 9 8 6 11 11 C 1.46903 * 111.00116 * 180.02562 * 8 6 5 12 12 C 1.50697 * 109.47385 * 170.75630 * 11 8 6 13 13 H 1.08000 * 119.99793 * 354.98606 * 12 11 8 14 14 C 1.37874 * 120.00099 * 174.98468 * 12 11 8 15 15 N 1.31517 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00218 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46802 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47156 * 119.99668 * 16 14 12 19 19 H 1.48501 * 109.47237 * 240.00021 * 16 14 12 20 20 C 1.53309 * 108.96113 * 56.95463 * 6 5 3 21 21 C 1.53096 * 109.19873 * 303.05635 * 20 6 5 22 22 O 1.42901 * 109.41533 * 57.60760 * 21 20 6 23 23 H 1.08998 * 109.47226 * 300.00153 * 1 2 3 24 24 H 1.09002 * 109.47010 * 60.00220 * 1 2 3 25 25 H 1.09004 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47226 * 239.99847 * 2 1 3 27 27 H 1.09002 * 109.47010 * 119.99780 * 2 1 3 28 28 H 1.09004 * 109.52133 * 182.29295 * 5 3 2 29 29 H 1.09005 * 109.52316 * 302.41672 * 5 3 2 30 30 H 1.08998 * 109.47176 * 178.95593 * 9 8 6 31 31 H 1.09006 * 109.47150 * 298.95538 * 9 8 6 32 32 H 1.08998 * 109.46952 * 302.49488 * 10 9 8 33 33 H 1.08998 * 109.46949 * 62.49547 * 10 9 8 34 34 H 1.08997 * 109.46975 * 182.49597 * 10 9 8 35 35 H 1.09001 * 109.46555 * 290.75424 * 11 8 6 36 36 H 1.08996 * 109.47275 * 50.75003 * 11 8 6 37 37 H 0.97005 * 119.99994 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.50596 * 183.14126 * 20 6 5 39 39 H 1.09002 * 109.56332 * 63.00422 * 20 6 5 40 40 H 1.09003 * 109.47566 * 297.63094 * 21 20 6 41 41 H 1.08999 * 109.48241 * 177.59319 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8416 5 6 3.5657 1.4446 0.1258 6 6 4.1728 0.7371 -1.0896 7 1 3.8517 -0.3044 -1.1033 8 7 5.6384 0.8003 -1.0137 9 6 6.1253 0.2297 0.2493 10 6 5.6696 -1.2266 0.3601 11 6 6.2547 0.1304 -2.1667 12 6 7.7358 0.4082 -2.1765 13 1 8.1629 1.0858 -1.4521 14 6 8.5457 -0.2026 -3.1103 15 7 8.0256 -1.0282 -3.9922 16 14 10.3817 0.1411 -3.1220 17 1 10.7131 1.0978 -2.0356 18 1 11.1242 -1.1272 -2.9089 19 1 10.7674 0.7266 -4.4311 20 6 3.6925 1.4384 -2.3655 21 6 2.1618 1.4366 -2.3952 22 8 1.6632 2.0814 -1.2215 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9264 2.4724 0.1668 29 1 3.8569 0.9198 1.0357 30 1 7.2143 0.2723 0.2714 31 1 5.7223 0.8012 1.0855 32 1 4.5826 -1.2732 0.2936 33 1 6.1085 -1.8074 -0.4511 34 1 5.9929 -1.6367 1.3169 35 1 6.0871 -0.9442 -2.0948 36 1 5.8083 0.5069 -3.0870 37 1 8.5953 -1.4577 -4.6494 38 1 4.0743 0.9081 -3.2381 39 1 4.0557 2.4660 -2.3760 40 1 1.8001 0.4088 -2.4267 41 1 1.8147 1.9716 -3.2792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170224728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:06 Heat of formation + Delta-G solvation = -74.630977 kcal Electronic energy + Delta-G solvation = -18836.133646 eV Core-core repulsion = 16135.790579 eV Total energy + Delta-G solvation = -2700.343068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15202 -38.52958 -34.88367 -34.34710 -33.30060 -31.36148 -30.57714 -28.33802 -25.43874 -25.37969 -23.81261 -23.54425 -21.31365 -19.77420 -18.45609 -17.55414 -17.02152 -16.67803 -16.65276 -15.68233 -15.53677 -15.34409 -14.79798 -14.47322 -14.20549 -13.92803 -13.64091 -13.49861 -13.28106 -12.99611 -12.89474 -12.69210 -12.62764 -12.52728 -12.18299 -12.08270 -11.93128 -11.79726 -11.56838 -11.25284 -11.08639 -10.92035 -10.56761 -10.35440 -8.87411 -8.19254 -6.27869 1.38787 1.39896 1.52988 2.39921 2.94108 3.13488 3.31287 3.76958 3.88341 4.03217 4.09909 4.18054 4.27658 4.34382 4.41239 4.44962 4.51912 4.59437 4.63152 4.75769 4.80417 4.89098 4.92645 5.00454 5.03478 5.07700 5.15133 5.20424 5.26210 5.34189 5.38338 5.40556 5.45147 5.52491 5.69594 6.11554 6.31529 6.42336 6.73614 6.90128 7.41475 8.91537 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037660 B = 0.006046 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.319445 B = 4630.233978 C = 4887.509653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.157 4.157 3 C 0.093 3.907 4 H 0.120 0.880 5 C -0.134 4.134 6 C 0.084 3.916 7 H 0.031 0.969 8 N -0.541 5.541 9 C 0.058 3.942 10 C -0.177 4.177 11 C 0.204 3.796 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.146 4.146 21 C 0.068 3.932 22 O -0.385 6.385 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.073 0.927 35 H -0.028 1.028 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.916 2.211 9.112 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C 0.036 3.964 4 H 0.138 0.862 5 C -0.172 4.172 6 C -0.024 4.024 7 H 0.049 0.951 8 N -0.265 5.265 9 C -0.070 4.070 10 C -0.235 4.235 11 C 0.078 3.922 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.195 4.195 15 N -0.576 5.576 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.184 4.184 21 C -0.009 4.009 22 O -0.304 6.304 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.092 0.908 35 H -0.011 1.011 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.840 2.775 8.953 15.897 hybrid contribution 1.268 -1.271 -0.642 1.907 sum -11.572 1.504 8.311 14.326 Atomic orbital electron populations 1.21666 0.94142 1.01840 1.02341 1.22184 0.97724 0.96837 1.02759 1.22362 0.92720 0.93859 0.87507 0.86214 1.22256 0.95858 1.01428 0.97664 1.21637 0.88203 0.96878 0.95719 0.95121 1.62279 1.04886 1.56221 1.03066 1.22032 1.00158 0.92913 0.91889 1.22264 1.01040 0.98733 1.01511 1.19416 0.93694 0.90606 0.88501 1.21500 0.93380 1.25648 1.15104 0.92361 1.25840 1.03615 0.94904 0.95136 1.70090 1.37219 1.30967 1.19320 0.85412 0.79485 0.78053 0.78148 1.18873 1.20469 1.20523 1.22254 0.97179 1.01207 0.97780 1.22552 0.91321 0.98330 0.88652 1.87918 1.74454 1.53825 1.14155 0.91622 0.93023 0.92260 0.92710 0.90141 0.91427 0.89820 0.92504 0.89669 0.92260 0.95401 0.90791 1.01075 0.97627 0.92848 0.92904 0.91983 0.92507 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.81 71.98 0.71 -1.86 16 2 C -0.16 -3.36 4.74 30.59 0.15 -3.21 16 3 C 0.09 2.20 3.29 30.63 0.10 2.30 16 4 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 5 C -0.13 -3.74 4.44 30.69 0.14 -3.60 16 6 C 0.08 2.97 1.17 45.08 0.05 3.02 16 7 H 0.03 1.13 5.07 -2.39 -0.01 1.12 16 8 N -0.54 -23.26 4.58 -874.57 -4.00 -27.27 16 9 C 0.06 2.20 5.40 86.30 0.47 2.67 16 10 C -0.18 -6.18 9.24 71.98 0.66 -5.51 16 11 C 0.20 10.85 4.36 85.56 0.37 11.22 16 12 C -0.52 -29.61 8.33 25.60 0.21 -29.39 16 13 H 0.06 3.31 7.28 -2.91 -0.02 3.29 16 14 C 0.00 0.15 5.46 84.65 0.46 0.62 16 15 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.15 -5.14 5.13 30.73 0.16 -4.98 16 21 C 0.07 1.90 6.52 72.01 0.47 2.37 16 22 O -0.38 -10.54 10.13 -148.98 -1.51 -12.05 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 25 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.05 1.36 4.98 -2.39 -0.01 1.35 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 2.09 6.57 -2.38 -0.02 2.08 16 30 H 0.06 2.42 6.78 -2.39 -0.02 2.41 16 31 H 0.09 2.69 6.38 -2.38 -0.02 2.67 16 32 H 0.06 1.87 6.34 -2.39 -0.02 1.86 16 33 H 0.03 1.17 6.54 -2.39 -0.02 1.15 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H -0.03 -1.64 6.26 -2.39 -0.01 -1.66 16 36 H 0.01 0.33 5.96 -2.39 -0.01 0.32 16 37 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 38 H 0.05 2.10 6.42 -2.38 -0.02 2.09 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 1.49 6.23 -2.39 -0.01 1.48 16 41 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -63.92 302.81 1.74 -62.18 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.99 Total: 13.01 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.95 Total: -26.37 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -3.72 Total: -83.63 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.51 Total: -12.05 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.92 1.74 -62.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170224728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.453 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds