Wall clock time and date at job start Sun Mar 29 2020 22:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47082 * 2 1 4 4 H 1.08993 * 109.48535 * 304.98217 * 3 2 1 5 5 C 1.53092 * 109.48250 * 184.94246 * 3 2 1 6 6 C 1.53182 * 109.16583 * 297.63124 * 5 3 2 7 7 H 1.08997 * 109.61266 * 62.92597 * 6 5 3 8 8 N 1.46896 * 109.54194 * 183.15088 * 6 5 3 9 9 C 1.46898 * 110.99987 * 303.50713 * 8 6 5 10 10 C 1.53000 * 109.46864 * 168.19729 * 9 8 6 11 11 C 1.46908 * 110.99442 * 179.55742 * 8 6 5 12 12 C 1.50698 * 109.47369 * 61.31246 * 11 8 6 13 13 H 1.08005 * 120.00153 * 4.50248 * 12 11 8 14 14 C 1.37879 * 119.99966 * 184.50941 * 12 11 8 15 15 N 1.31507 * 119.99938 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00072 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47018 * 89.99971 * 16 14 12 18 18 H 1.48494 * 109.47196 * 210.00100 * 16 14 12 19 19 H 1.48506 * 109.47146 * 330.00127 * 16 14 12 20 20 C 1.53171 * 109.03292 * 303.01869 * 6 5 3 21 21 C 1.53095 * 109.16869 * 56.98146 * 20 6 5 22 22 O 1.42901 * 109.41249 * 302.39165 * 21 20 6 23 23 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47545 * 59.99526 * 1 2 3 25 25 H 1.09005 * 109.47277 * 299.99202 * 1 2 3 26 26 H 1.09004 * 109.47167 * 120.00338 * 2 1 3 27 27 H 1.09005 * 109.46748 * 240.00244 * 2 1 3 28 28 H 1.09003 * 109.52109 * 57.53391 * 5 3 2 29 29 H 1.08996 * 109.52320 * 177.72583 * 5 3 2 30 30 H 1.09001 * 109.47150 * 288.19228 * 9 8 6 31 31 H 1.08994 * 109.47087 * 48.19687 * 9 8 6 32 32 H 1.08994 * 109.47205 * 298.68667 * 10 9 8 33 33 H 1.08995 * 109.47121 * 58.69397 * 10 9 8 34 34 H 1.09011 * 109.46904 * 178.69093 * 10 9 8 35 35 H 1.09003 * 109.46713 * 181.31042 * 11 8 6 36 36 H 1.08998 * 109.46963 * 301.30286 * 11 8 6 37 37 H 0.97007 * 120.00066 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.52619 * 297.07115 * 20 6 5 39 39 H 1.09007 * 109.57191 * 176.91664 * 20 6 5 40 40 H 1.09004 * 109.48328 * 182.40637 * 21 20 6 41 41 H 1.08998 * 109.48291 * 62.37075 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8419 5 6 3.5658 1.4446 -0.1243 6 6 4.1705 0.7377 1.0927 7 1 3.8508 -0.3042 1.1069 8 7 5.6363 0.8010 1.0196 9 6 6.1263 0.2203 -0.2376 10 6 7.6069 0.5628 -0.4146 11 6 6.2502 0.1402 2.1792 12 6 5.8561 -1.3142 2.1955 13 1 5.2743 -1.7252 1.3837 14 6 6.2381 -2.1202 3.2470 15 7 6.9467 -1.6198 4.2353 16 14 5.7490 -3.9229 3.2675 17 1 6.7987 -4.7283 2.5933 18 1 5.6009 -4.3796 4.6727 19 1 4.4585 -4.0939 2.5528 20 6 3.6902 1.4385 2.3671 21 6 2.1595 1.4367 2.3954 22 8 1.6620 2.0814 1.2212 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 0.5137 0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 3.8579 0.9187 -1.0334 29 1 3.9266 2.4723 -0.1650 30 1 6.0048 -0.8626 -0.2093 31 1 5.5567 0.6281 -1.0725 32 1 7.7258 1.6450 -0.4663 33 1 8.1733 0.1750 0.4320 34 1 7.9765 0.1123 -1.3359 35 1 7.3350 0.2220 2.1118 36 1 5.9060 0.6204 3.0952 37 1 7.2152 -2.1868 4.9753 38 1 4.0534 2.4661 2.3768 39 1 4.0713 0.9093 3.2406 40 1 1.8116 1.9717 3.2790 41 1 1.7977 0.4089 2.4267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170224729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:08 Heat of formation + Delta-G solvation = -57.932042 kcal Electronic energy + Delta-G solvation = -19012.577005 eV Core-core repulsion = 16312.958058 eV Total energy + Delta-G solvation = -2699.618948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.70657 -36.83286 -33.25161 -32.65716 -31.98981 -29.94828 -29.05338 -26.41872 -24.06169 -23.65840 -22.49261 -21.63160 -19.77709 -18.60414 -16.59770 -16.09879 -15.66192 -15.00816 -14.70769 -14.27234 -14.03816 -13.70043 -13.40035 -13.18330 -12.67232 -12.59335 -12.14658 -11.83772 -11.73304 -11.46757 -11.19335 -11.07621 -10.94309 -10.78622 -10.70629 -10.61524 -10.41676 -10.04198 -9.97304 -9.84361 -9.52790 -9.33583 -9.03834 -8.42490 -7.11847 -6.03672 -4.12454 3.24179 3.31701 3.33568 4.17238 4.38173 4.90561 4.97293 5.19043 5.23879 5.26836 5.37001 5.54292 5.64996 5.73006 5.77398 5.84578 5.95828 5.96348 6.01272 6.08949 6.14267 6.21665 6.26457 6.33467 6.42039 6.46200 6.54327 6.58583 6.84175 6.85528 6.89845 7.02794 7.31282 7.54556 7.58076 7.90976 8.10992 8.30241 8.35885 8.98185 9.53729 11.00743 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.008592 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.968001 B = 3258.074977 C = 3827.399508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.161 4.161 3 C 0.095 3.905 4 H 0.094 0.906 5 C -0.146 4.146 6 C 0.095 3.905 7 H 0.050 0.950 8 N -0.538 5.538 9 C 0.051 3.949 10 C -0.141 4.141 11 C 0.182 3.818 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.143 4.143 21 C 0.059 3.941 22 O -0.381 6.381 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 4.380 -7.519 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.037 3.963 4 H 0.112 0.888 5 C -0.184 4.184 6 C -0.014 4.014 7 H 0.068 0.932 8 N -0.262 5.262 9 C -0.077 4.077 10 C -0.199 4.199 11 C 0.057 3.943 12 C -0.584 4.584 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.181 4.181 21 C -0.018 4.018 22 O -0.300 6.300 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.325 4.999 -7.324 12.163 hybrid contribution -0.148 -2.330 0.124 2.338 sum -8.474 2.669 -7.200 11.435 Atomic orbital electron populations 1.21689 0.95637 1.01059 1.01902 1.22218 0.96421 0.97905 1.03338 1.22162 0.94123 0.92696 0.87336 0.88837 1.22376 0.94722 1.02080 0.99223 1.21359 0.89400 0.97576 0.93058 0.93204 1.62581 1.04338 1.55731 1.03529 1.21941 0.95278 0.98100 0.92391 1.21705 0.96769 1.00678 1.00706 1.19820 0.95014 0.91475 0.88021 1.21705 1.34514 0.96076 1.06066 0.92742 1.24932 0.95010 0.98230 0.95521 1.69938 1.37282 1.35850 1.09812 0.86718 0.78921 0.85859 0.77274 1.20679 1.21136 1.20041 1.22177 0.94582 1.01691 0.99617 1.22612 0.94152 0.97499 0.87488 1.87894 1.74828 1.53430 1.13818 0.93184 0.93102 0.92299 0.90608 0.91347 0.91472 0.90925 0.94211 0.92926 0.93249 0.91952 0.93898 0.95172 0.94548 0.92854 0.91428 0.89730 0.89468 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.81 37.16 0.36 -1.36 16 2 C -0.16 -2.21 4.74 -26.73 -0.13 -2.33 16 3 C 0.10 1.36 3.29 -26.69 -0.09 1.27 16 4 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 5 C -0.15 -2.32 4.51 -26.59 -0.12 -2.44 16 6 C 0.09 1.81 1.42 -67.53 -0.10 1.71 16 7 H 0.05 1.06 5.25 -51.93 -0.27 0.79 16 8 N -0.54 -11.33 4.57 -227.87 -1.04 -12.37 16 9 C 0.05 0.99 5.29 -3.83 -0.02 0.97 16 10 C -0.14 -2.53 9.91 37.16 0.37 -2.16 16 11 C 0.18 4.57 4.60 -4.97 -0.02 4.55 16 12 C -0.54 -14.55 7.48 -34.44 -0.26 -14.81 16 13 H 0.05 1.46 5.88 -52.48 -0.31 1.15 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 16 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.14 -2.63 5.08 -26.59 -0.14 -2.76 16 21 C 0.06 0.94 6.52 37.21 0.24 1.18 16 22 O -0.38 -6.02 10.13 -35.23 -0.36 -6.38 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 26 H 0.08 1.19 4.98 -51.93 -0.26 0.93 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.01 6.30 -51.93 -0.33 0.68 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.85 6.35 -51.93 -0.33 0.52 16 31 H 0.05 0.90 5.71 -51.93 -0.30 0.60 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.26 6.50 -51.93 -0.34 0.92 16 34 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.03 0.82 6.40 -51.93 -0.33 0.48 16 36 H 0.04 0.98 6.31 -51.93 -0.33 0.65 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.76 6.57 -51.92 -0.34 1.42 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.80 6.23 -51.93 -0.32 0.47 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -28.09 302.84 -7.91 -36.00 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.80 Total: 1.51 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 0.01 Total: -14.48 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.30 Total: -37.38 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.36 Total: -6.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.09 -7.91 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170224729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.933 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds